Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 7.7e-160 567.4 353 100.0
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 5.0e-82 308.9 347 53.0
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 2.3e-79 300.1 329 54.7
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 2.3e-79 300.1 344 52.3
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 3.0e-79 299.7 344 53.2
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 5.1e-79 298.9 304 57.9
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 3.3e-78 296.2 351 51.0
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 5.7e-78 295.4 348 51.4
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 2.2e-77 293.5 351 49.9
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 1.1e-76 291.2 350 50.6
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 1.4e-76 290.8 347 51.0
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 1.8e-76 290.4 350 50.6
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 4.1e-76 289.3 353 50.4
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 9.1e-76 288.1 336 51.8
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.2e-75 287.7 336 51.5
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 4.4e-70 269.2 344 58.4
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 4.4e-70 269.2 350 47.4
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 4.4e-70 269.2 350 46.9
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 2.2e-69 266.9 346 49.7
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 7.0e-68 261.9 349 46.1
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 2.0e-67 260.4 350 44.0
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 2.6e-67 260.0 349 46.1
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 2.6e-67 260.0 343 52.8
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 3.5e-67 259.6 344 48.0
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.0e-66 258.1 346 46.5
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 2.2e-66 256.9 340 47.6
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 5.0e-66 255.8 287 55.1
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 8.5e-66 255.0 350 56.3
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 1.1e-65 254.6 344 44.8
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 1.9e-65 253.8 344 55.8
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 3.2e-65 253.1 351 54.7
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 3.2e-65 253.1 344 43.9
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.6e-64 249.6 345 45.2
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 8.0e-64 248.4 345 45.5
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 1.0e-63 248.1 342 46.5
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 5.2e-63 245.7 350 45.4
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 6.7e-63 245.4 344 45.3
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.2e-62 244.6 288 52.1
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 1.5e-62 244.2 449 40.1
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.5e-62 244.2 344 47.1
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 5.7e-62 242.3 385 50.1
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.7e-61 240.7 346 44.5
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 3.7e-61 239.6 343 50.1
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 2.4e-60 236.9 345 41.7
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 3.1e-60 236.5 348 45.7
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 5.3e-60 235.7 344 54.7
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.0e-59 233.8 351 51.9
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.7e-59 233.4 336 44.6
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 4.5e-59 232.6 339 41.9
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 5.9e-59 232.3 350 41.1
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 5.9e-59 232.3 353 44.5
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.0e-58 231.5 336 44.3
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 1.3e-58 231.1 350 39.7
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 1.3e-58 231.1 353 43.6
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 1.9e-57 227.3 350 41.1
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 2.5e-57 226.9 344 44.8
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 2.5e-57 226.9 345 42.3
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 3.2e-57 226.5 345 41.7
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 9.4e-57 224.9 336 41.7
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 9.4e-57 224.9 345 41.7
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 3.0e-55 219.9 340 43.5
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 5.2e-55 219.2 344 50.6
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 6.8e-55 218.8 348 39.1
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 8.8e-55 218.4 348 38.8
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 8.8e-55 218.4 344 40.7
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 2.0e-54 217.2 346 41.9
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 4.4e-54 216.1 348 40.8
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 5.7e-54 215.7 284 47.9
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.8e-53 212.6 367 39.5
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 6.3e-53 212.2 280 55.7
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 1.8e-52 210.7 359 38.7
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 5.4e-52 209.1 347 41.5
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 7.0e-52 208.8 341 47.8
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 2.7e-51 206.8 353 39.4
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.7e-50 204.1 372 38.4
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 1.5e-49 201.1 336 41.1
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 2.5e-49 200.3 362 37.8
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 2.5e-49 200.3 362 37.8
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 3.2e-49 199.9 362 38.1
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 3.2e-49 199.9 314 43.9
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 2.1e-48 197.2 312 45.5
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 6.1e-48 195.7 375 36.5
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 8.0e-48 195.3 350 37.4
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.4e-47 194.5 353 39.1
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 1.8e-47 194.1 332 38.3
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 2.3e-47 193.7 353 39.7
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 2.3e-47 193.7 349 39.5
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 4.0e-47 193.0 336 45.8
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 1.5e-46 191.0 350 37.1
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 3.4e-46 189.9 500 32.2
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 7.5e-46 188.7 408 34.3
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.3e-45 188.0 350 36.9
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.4e-44 184.5 353 39.4
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 3.1e-44 183.3 341 37.8
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 7.0e-44 182.2 350 37.1
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.6e-43 181.0 347 38.0
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 3.5e-43 179.9 353 38.0
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 3.5e-43 179.9 345 36.8
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 8.6e-42 175.3 367 36.8
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.5e-41 173.7 347 36.9
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.6e-40 171.0 328 38.4
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 3.6e-40 169.9 348 38.8
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 5.2e-39 166.0 379 34.8
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 6.8e-39 165.6 159 59.7
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 2.6e-38 163.7 303 37.3
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 4.9e-37 159.5 291 39.5
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 6.4e-37 159.1 266 38.7
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 9.2e-36 155.2 223 44.8
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 2.7e-35 153.7 330 38.2
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 3.5e-35 153.3 286 36.7
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 6.0e-35 152.5 347 34.6
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 1.7e-34 151.0 371 32.3
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.7e-34 151.0 341 32.6
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 1.7e-34 151.0 166 53.6
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 6.6e-34 149.1 214 42.1
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 8.0e-32 142.1 341 31.1
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.7e-29 134.4 328 33.2
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 8.3e-29 132.1 377 30.2
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 3.2e-28 130.2 163 45.4
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 3.2e-28 130.2 159 44.7
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 7.0e-28 129.0 164 46.3
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 9.2e-28 128.6 146 51.4
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 1.3e-26 124.8 149 50.3
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 5.0e-26 122.9 215 41.4
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 7.3e-25 119.0 131 48.1
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.6e-24 116.7 323 31.6
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 1.4e-20 104.8 349 28.9
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.4e-20 102.8 523 25.0
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 9.2e-20 102.1 150 44.0
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 2.1e-19 100.9 139 47.5
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.7e-19 100.5 293 29.4
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 6.6e-18 95.9 78 62.8
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 5.6e-17 92.8 119 46.2
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 4.7e-16 89.7 123 43.9
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 1.8e-15 87.8 115 49.6
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 6.8e-15 85.9 167 35.3
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 6.8e-15 85.9 74 60.8
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 1.3e-13 81.6 239 29.7
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 2.2e-13 80.9 97 50.5
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 9.2e-12 75.5 303 31.4
MBI08_g15045_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D010248 2.1e-11 74.3 105 44.8
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 4.3e-09 66.6 131 37.4
Actinidia39035 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.4e-07 61.6 58 55.2
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 9.9e-06 55.5 43 67.4


User provided reference genes

Program Settings