Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 8.7e-27 122.9 61 100.0
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 5.5e-13 77.0 60 58.3
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 5.5e-13 77.0 60 58.3
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 5.5e-13 77.0 60 58.3
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 9.4e-13 76.3 60 60.0
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 1.2e-12 75.9 47 70.2
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 1.2e-12 75.9 57 57.9
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 1.6e-12 75.5 54 61.1
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.6e-12 75.5 57 61.4
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.6e-12 75.5 53 62.3
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 1.6e-12 75.5 59 61.0
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 2.1e-12 75.1 57 61.4
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 2.1e-12 75.1 55 63.6
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 6.1e-12 73.6 58 58.6
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 1.0e-11 72.8 59 52.5
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 1.0e-11 72.8 52 63.5
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 1.4e-11 72.4 57 57.9
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.4e-11 72.4 60 56.7
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 1.8e-11 72.0 59 55.9
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 1.8e-11 72.0 59 57.6
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 1.8e-11 72.0 60 55.0
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 2.3e-11 71.6 59 55.9
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 3.0e-11 71.2 59 55.9
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 3.9e-11 70.9 51 62.7
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 3.9e-11 70.9 53 60.4
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 3.9e-11 70.9 59 54.2
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 5.1e-11 70.5 59 54.2
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 5.1e-11 70.5 58 58.6
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 6.7e-11 70.1 58 58.6
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 8.8e-11 69.7 58 56.9
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 8.8e-11 69.7 59 54.2
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 8.8e-11 69.7 60 56.7
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 1.1e-10 69.3 59 54.2
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.5e-10 68.9 58 56.9
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.5e-10 68.9 58 56.9
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 2.0e-10 68.6 55 58.2
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 2.0e-10 68.6 52 61.5
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 2.6e-10 68.2 60 51.7
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 2.6e-10 68.2 60 51.7
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 2.6e-10 68.2 60 53.3
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 3.3e-10 67.8 58 56.9
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 3.3e-10 67.8 60 55.0
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 4.4e-10 67.4 56 58.9
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 4.4e-10 67.4 49 61.2
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 5.7e-10 67.0 58 56.9
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 5.7e-10 67.0 49 61.2
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 7.4e-10 66.6 61 52.5
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 7.4e-10 66.6 46 65.2
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 9.7e-10 66.2 59 52.5
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 9.7e-10 66.2 52 57.7
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 9.7e-10 66.2 57 54.4
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 1.3e-09 65.9 51 58.8
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 1.3e-09 65.9 59 52.5
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 1.3e-09 65.9 56 51.8
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 1.3e-09 65.9 51 62.7
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.3e-09 65.9 52 59.6
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.3e-09 65.9 52 59.6
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 1.7e-09 65.5 58 53.4
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 2.2e-09 65.1 66 50.0
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 2.2e-09 65.1 50 60.0
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 2.8e-09 64.7 66 48.5
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 3.7e-09 64.3 60 53.3
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 4.8e-09 63.9 44 65.9
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 4.8e-09 63.9 57 56.1
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 4.8e-09 63.9 57 56.1
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 4.8e-09 63.9 53 60.4
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 6.3e-09 63.5 57 54.4
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 6.3e-09 63.5 57 54.4
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 6.3e-09 63.5 57 54.4
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 6.3e-09 63.5 57 54.4
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 6.3e-09 63.5 59 54.2
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 6.3e-09 63.5 56 58.9
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 1.1e-08 62.8 41 63.4
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 1.1e-08 62.8 59 47.5
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 1.4e-08 62.4 51 52.9
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 1.4e-08 62.4 60 51.7
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 1.8e-08 62.0 53 58.5
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 1.8e-08 62.0 51 54.9
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 2.4e-08 61.6 58 51.7
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 2.4e-08 61.6 58 51.7
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.4e-08 61.6 51 58.8
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 2.4e-08 61.6 49 63.3
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 2.4e-08 61.6 49 63.3
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 2.4e-08 61.6 59 57.6
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 3.1e-08 61.2 58 51.7
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 3.1e-08 61.2 53 54.7
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 3.1e-08 61.2 49 61.2
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 3.1e-08 61.2 49 63.3
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 4.1e-08 60.8 58 50.0
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 6.9e-08 60.1 51 52.9
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 6.9e-08 60.1 59 52.5
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 9.1e-08 59.7 51 56.9
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 9.1e-08 59.7 53 62.3
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 9.1e-08 59.7 51 56.9
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 1.5e-07 58.9 51 56.9
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 4.5e-07 57.4 56 50.0
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 5.9e-07 57.0 59 50.8
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 5.9e-07 57.0 51 60.8
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 7.7e-07 56.6 56 50.0
CDE04G1794 Ceratophyllum demersum HOM05D006882 ORTHO05D008688 1.0e-06 56.2 41 63.4
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 1.3e-06 55.8 38 65.8
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 2.9e-06 54.7 49 55.1
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 2.9e-06 54.7 49 57.1


User provided reference genes

Program Settings