Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 1.6e-42 175.6 84 100.0
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 1.0e-33 146.4 82 80.5
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 5.0e-33 144.1 80 83.8
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 5.0e-33 144.1 80 82.5
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 1.5e-32 142.5 81 79.0
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 2.5e-32 141.7 84 78.6
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 3.3e-32 141.4 81 81.5
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 4.3e-32 141.0 84 77.4
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 4.3e-32 141.0 80 81.2
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.6e-32 140.6 80 78.8
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 7.3e-32 140.2 80 80.0
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 9.5e-32 139.8 81 81.5
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.2e-31 139.4 80 78.8
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.6e-31 139.0 81 79.0
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.6e-31 139.0 83 79.5
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.1e-31 138.7 80 77.5
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 2.8e-31 138.3 80 78.8
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.8e-31 138.3 84 75.0
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 3.6e-31 137.9 81 75.3
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.6e-31 137.9 80 77.5
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 3.6e-31 137.9 80 81.2
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 4.7e-31 137.5 81 74.1
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 6.2e-31 137.1 80 77.5
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 6.2e-31 137.1 80 77.5
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 6.2e-31 137.1 80 76.2
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 6.2e-31 137.1 80 76.2
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 1.1e-30 136.3 81 77.8
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 1.8e-30 135.6 80 76.2
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.8e-30 135.6 80 76.2
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 2.3e-30 135.2 81 76.5
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 2.3e-30 135.2 81 75.3
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 3.1e-30 134.8 80 78.8
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 4.0e-30 134.4 80 77.5
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 5.2e-30 134.0 80 77.5
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 6.8e-30 133.7 80 78.8
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 8.9e-30 133.3 81 74.1
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 8.9e-30 133.3 81 76.5
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.0e-29 132.1 81 77.8
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 2.0e-29 132.1 80 76.2
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.6e-29 131.7 81 76.5
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 2.6e-29 131.7 80 76.2
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 2.6e-29 131.7 80 75.0
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.6e-29 131.7 80 75.0
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 3.4e-29 131.3 81 74.1
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 3.4e-29 131.3 80 76.2
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 3.4e-29 131.3 80 75.0
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 3.4e-29 131.3 81 74.1
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 4.4e-29 131.0 82 70.7
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 4.4e-29 131.0 81 74.1
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 4.4e-29 131.0 80 75.0
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 5.8e-29 130.6 81 72.8
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 5.8e-29 130.6 80 73.8
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 5.8e-29 130.6 81 75.3
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 7.5e-29 130.2 80 75.0
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 7.5e-29 130.2 80 76.2
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 7.5e-29 130.2 80 76.2
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 7.5e-29 130.2 80 76.2
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 7.5e-29 130.2 80 73.8
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 9.8e-29 129.8 81 75.3
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 9.8e-29 129.8 81 75.3
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 9.8e-29 129.8 81 71.6
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 1.3e-28 129.4 81 75.3
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 1.7e-28 129.0 81 71.6
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.7e-28 129.0 81 75.3
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 2.2e-28 128.6 81 71.6
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.2e-28 128.6 83 71.1
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 2.9e-28 128.3 81 70.4
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 2.9e-28 128.3 81 70.4
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 2.9e-28 128.3 81 70.4
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 2.9e-28 128.3 81 70.4
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 2.9e-28 128.3 81 70.4
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.9e-28 128.3 81 72.8
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 2.9e-28 128.3 77 75.3
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 3.7e-28 127.9 81 70.4
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 3.7e-28 127.9 81 70.4
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 4.9e-28 127.5 80 73.8
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 6.4e-28 127.1 80 72.5
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 6.4e-28 127.1 81 69.1
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.1e-27 126.3 81 69.1
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.4e-27 125.9 81 69.1
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.4e-27 125.9 80 68.8
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.4e-27 125.9 80 73.8
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.9e-27 125.6 76 73.7
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 1.9e-27 125.6 81 74.1
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 2.4e-27 125.2 81 69.1
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 2.4e-27 125.2 81 69.1
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 2.4e-27 125.2 81 69.1
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 2.4e-27 125.2 80 73.8
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 2.4e-27 125.2 81 70.4
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 4.1e-27 124.4 80 67.5
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 5.4e-27 124.0 80 73.8
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 5.4e-27 124.0 80 68.8
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 7.0e-27 123.6 80 73.8
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.2e-26 122.9 81 69.1
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.2e-26 122.9 81 69.1
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 1.6e-26 122.5 81 70.4
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 2.0e-26 122.1 81 69.1
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.0e-26 122.1 81 69.1
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 2.7e-26 121.7 76 72.4
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 4.6e-26 120.9 80 67.5
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 7.8e-26 120.2 81 66.7
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.3e-25 119.4 76 72.4
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.3e-25 119.4 81 67.9
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 1.3e-25 119.4 80 68.8
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 1.3e-25 119.4 81 66.7
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 1.7e-25 119.0 81 67.9
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 3.9e-25 117.9 81 66.7
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 5.0e-25 117.5 80 65.0
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 5.0e-25 117.5 81 66.7
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 6.6e-25 117.1 81 66.7
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.5e-24 115.9 76 65.8
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.5e-24 115.9 76 65.8
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 2.1e-23 112.1 81 65.4
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 6.2e-23 110.5 75 69.3
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.8e-22 109.0 81 60.5
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.5e-21 105.9 72 69.4
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 4.4e-21 104.4 81 59.3
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 3.7e-20 101.3 81 58.0
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 3.7e-20 101.3 76 59.2
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 3.7e-20 101.3 76 60.5
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-19 99.8 78 59.0
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.4e-19 99.4 81 56.8
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 1.4e-19 99.4 81 58.0
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 1.6e-18 95.9 78 57.7
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 2.1e-18 95.5 81 55.6
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 4.6e-18 94.4 84 53.6
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 1.0e-17 93.2 63 71.4
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 8.6e-17 90.1 82 46.3
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 1.5e-16 89.4 82 47.6
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 1.9e-16 89.0 74 54.1
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 9.5e-16 86.7 80 46.2
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 3.1e-14 81.6 163 31.3
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 4.9e-12 74.3 81 40.7
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 1.9e-11 72.4 81 39.5
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 5.1e-09 64.3 80 37.5
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.1e-08 63.2 80 36.2
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 3.1e-06 55.1 36 63.9


User provided reference genes

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