Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08590 Nelumbo nucifera HOM05D001753 ORTHO05D001718 3.5e-80 301.6 155 100.0
Nn6g31701 Nelumbo nucifera HOM05D001753 ORTHO05D001718 5.8e-43 177.9 120 80.0
Nn2g11441 Nelumbo nucifera HOM05D001753 ORTHO05D001718 1.7e-42 176.4 129 74.4
MBI01_g09377_MAGBIO Magnolia biondii HOM05D001753 ORTHO05D001718 1.2e-32 143.7 124 63.7
Thecc.05G182500 Theobroma cacao HOM05D001753 ORTHO05D001718 8.1e-29 131.0 117 63.2
Potri.016G064500 Populus trichocarpa HOM05D001753 ORTHO05D001718 2.4e-28 129.4 116 62.1
CDE02G2273 Ceratophyllum demersum HOM05D001753 ORTHO05D001718 1.2e-27 127.1 142 50.7
Eucgr.K01906 Eucalyptus grandis HOM05D001753 ORTHO05D001718 2.0e-27 126.3 117 60.7
Gohir.D09G127900 Gossypium hirsutum HOM05D001753 ORTHO05D001718 2.6e-27 125.9 117 59.8
Cfa020099 Carpinus fangiana HOM05D001753 ORTHO05D001718 3.4e-27 125.6 129 56.6
Haze_20092 Corylus avellana HOM05D001753 ORTHO05D001718 7.6e-27 124.4 129 55.0
Duzib093G1014 Durio zibethinus HOM05D001753 ORTHO05D001718 7.6e-27 124.4 117 57.3
Sabra16G0066400 Salix brachista HOM05D001753 ORTHO05D001718 7.6e-27 124.4 116 57.8
ATR0605G148 Amborella trichopoda HOM05D001753 ORTHO05D001718 1.3e-26 123.6 122 57.4
CiPaw.09G024900 Carya illinoinensis HOM05D001753 ORTHO05D001718 2.2e-26 122.9 117 59.0
Eucgr.K01905 Eucalyptus grandis HOM05D001753 ORTHO05D001718 2.2e-26 122.9 117 59.0
Atru.chr8.1253 Acer truncatum HOM05D001753 ORTHO05D001718 2.9e-26 122.5 118 58.5
Manes.08G038200 Manihot esculenta HOM05D001753 ORTHO05D001718 3.8e-26 122.1 116 59.5
PSO063G1042 Papaver somniferum HOM05D001753 ORTHO05D001718 3.8e-26 122.1 124 55.6
PSO782G4913 Papaver somniferum HOM05D001753 ORTHO05D001718 3.8e-26 122.1 124 55.6
TWI74G0001 Tripterygium wilfordii HOM05D001753 ORTHO05D001718 3.8e-26 122.1 117 59.0
QL07p025959 Quercus lobata HOM05D001753 ORTHO05D001718 1.1e-25 120.6 117 57.3
Medtr7g107090 Medicago truncatula HOM05D001753 ORTHO05D001718 1.4e-25 120.2 144 48.6
Gorai.006G146500 Gossypium raimondii HOM05D001753 ORTHO05D001718 7.1e-25 117.9 117 57.3
BcaC05g29314 Brassica carinata HOM05D001753 ORTHO05D001718 9.3e-25 117.5 118 54.2
C05p56040 Brassica napus HOM05D001753 ORTHO05D001718 9.3e-25 117.5 118 54.2
BolC5t34271H Brassica oleracea HOM05D001753 ORTHO05D001718 9.3e-25 117.5 118 54.2
Ciclev10013372m.g Citrus clementina HOM05D001753 ORTHO05D001718 1.2e-24 117.1 119 57.1
Lj1g0016378 Lotus japonicus HOM05D001753 ORTHO05D001718 1.2e-24 117.1 117 53.8
COL.COLO4_29465 Corchorus olitorius HOM05D001753 ORTHO05D001718 1.6e-24 116.7 117 57.3
MD12G1047000 Malus domestica HOM05D001753 ORTHO05D001718 1.6e-24 116.7 117 57.3
arahy.Tifrunner.gnm1.ann1.X66AZZ Arachis hypogaea HOM05D001753 ORTHO05D001718 2.1e-24 116.3 117 53.0
Gohir.A01G199300 Gossypium hirsutum HOM05D001753 ORTHO05D001718 2.1e-24 116.3 117 57.3
arahy.Tifrunner.gnm1.ann1.3M5WNQ Arachis hypogaea HOM05D001753 ORTHO05D001718 2.7e-24 115.9 117 52.1
A05p37480 Brassica napus HOM05D001753 ORTHO05D001718 2.7e-24 115.9 118 54.2
BraA05t22546Z Brassica rapa HOM05D001753 ORTHO05D001718 2.7e-24 115.9 118 54.2
Gohir.D01G189400 Gossypium hirsutum HOM05D001753 ORTHO05D001718 2.7e-24 115.9 117 57.3
Gorai.002G233100 Gossypium raimondii HOM05D001753 ORTHO05D001718 2.7e-24 115.9 117 57.3
Lalb_Chr20g0111171 Lupinus albus HOM05D001753 ORTHO05D001718 2.7e-24 115.9 116 54.3
THA.LOC104826785 Tarenaya hassleriana HOM05D001753 ORTHO05D001718 2.7e-24 115.9 117 53.8
Aa31LG3G5680 Aethionema arabicum HOM05D001753 ORTHO05D001718 3.5e-24 115.5 143 48.3
BcaB06g25566 Brassica carinata HOM05D001753 ORTHO05D001718 3.5e-24 115.5 118 53.4
BcaC01g04074 Brassica carinata HOM05D001753 ORTHO05D001718 3.5e-24 115.5 118 54.2
C03p45330 Brassica napus HOM05D001753 ORTHO05D001718 3.5e-24 115.5 118 54.2
BolC3t16799H Brassica oleracea HOM05D001753 ORTHO05D001718 3.5e-24 115.5 118 54.2
A03p37330 Brassica napus HOM05D001753 ORTHO05D001718 4.6e-24 115.2 118 53.4
AL3G23480 Arabidopsis lyrata HOM05D001753 ORTHO05D001718 6.0e-24 114.8 118 52.5
AT3G11900 Arabidopsis thaliana HOM05D001753 ORTHO05D001718 6.0e-24 114.8 118 52.5
BraA03t12894Z Brassica rapa HOM05D001753 ORTHO05D001718 6.0e-24 114.8 118 52.5
Carub.0003s1122 Capsella rubella HOM05D001753 ORTHO05D001718 6.0e-24 114.8 117 53.0
VMungo1383G1183 Vigna mungo HOM05D001753 ORTHO05D001718 6.0e-24 114.8 117 49.6
BcaB04g18666 Brassica carinata HOM05D001753 ORTHO05D001718 7.9e-24 114.4 118 52.5
FAN05G4503 Fragaria x ananassa HOM05D001753 ORTHO05D001718 7.9e-24 114.4 143 49.0
Glyma.19G203200 Glycine max HOM05D001753 ORTHO05D001718 7.9e-24 114.4 117 52.1
RcHm_v2.0_Chr3g0477611 Rosa chinensis HOM05D001753 ORTHO05D001718 1.0e-23 114.0 143 48.3
Ca_09090_v3 Cicer arietinum L. HOM05D001753 ORTHO05D001718 1.3e-23 113.6 118 50.0
FAN05G3775 Fragaria x ananassa HOM05D001753 ORTHO05D001718 1.3e-23 113.6 143 49.0
Phvul.001G199300 Phaseolus vulgaris HOM05D001753 ORTHO05D001718 1.3e-23 113.6 117 53.0
PGR142G3945 Punica granatum HOM05D001753 ORTHO05D001718 2.3e-23 112.8 115 49.6
Os07g0231400 Oryza sativa ssp. japonica HOM05D001753 ORTHO05D001718 3.0e-23 112.5 133 49.6
Sp3g10100 Schrenkiella parvula HOM05D001753 ORTHO05D001718 3.0e-23 112.5 118 51.7
CsaV3_4G013440 Cucumis sativus L. HOM05D001753 ORTHO05D001718 3.9e-23 112.1 117 53.0
ClCG04G005170 Citrullus lanatus HOM05D001753 ORTHO05D001718 5.1e-23 111.7 117 53.0
Thhalv10020767m.g Eutrema salsugineum HOM05D001753 ORTHO05D001718 5.1e-23 111.7 118 53.4
FvH4_6g21140 Fragaria vesca HOM05D001753 ORTHO05D001718 5.1e-23 111.7 143 48.3
FAN02G3859 Fragaria x ananassa HOM05D001753 ORTHO05D001718 5.1e-23 111.7 143 48.3
FAN14G2031 Fragaria x ananassa HOM05D001753 ORTHO05D001718 5.1e-23 111.7 143 48.3
MELO3C008789.2 Cucumis melo HOM05D001753 ORTHO05D001718 8.7e-23 110.9 117 53.0
PGR142G2687 Punica granatum HOM05D001753 ORTHO05D001718 8.7e-23 110.9 115 49.6
Sed0004370 Sechium edule HOM05D001753 ORTHO05D001718 8.7e-23 110.9 117 53.0
Cpa.g.sc222.3 Carica papaya HOM05D001753 ORTHO05D001718 1.1e-22 110.5 117 50.4
Lalb_Chr25g0287791 Lupinus albus HOM05D001753 ORTHO05D001718 1.1e-22 110.5 116 53.4
Sed0015385 Sechium edule HOM05D001753 ORTHO05D001718 1.1e-22 110.5 117 53.8
CANSAT64G2050 Cannabis sativa HOM05D001753 ORTHO05D001718 1.9e-22 109.8 125 51.2
FAN09G3264 Fragaria x ananassa HOM05D001753 ORTHO05D001718 2.5e-22 109.4 143 46.9
FAN09G3861 Fragaria x ananassa HOM05D001753 ORTHO05D001718 2.5e-22 109.4 143 46.9
Glyma.03G205700 Glycine max HOM05D001753 ORTHO05D001718 2.5e-22 109.4 117 51.3
HPP92_007455 Vanilla planifolia HOM05D001753 ORTHO05D001718 3.3e-22 109.0 133 46.6
GSVIVG01031664001 Vitis vinifera HOM05D001753 ORTHO05D001718 4.3e-22 108.6 114 54.4
TPR.G14392 Trifolium pratense HOM05D001753 ORTHO05D001718 9.6e-22 107.5 117 47.9
AagrBONN_evm.TU.Sc2ySwM_228.1264 Anthoceros agrestis HOM05D001753 ORTHO05D001718 4.0e-20 102.1 145 37.9
SEGI_12532 Sequoiadendron giganteum HOM05D001753 ORTHO05D001718 2.0e-19 99.8 142 40.8
Pp3c15_890 Physcomitrium patens HOM05D001753 ORTHO05D001718 5.8e-19 98.2 127 43.3
SHI31765 Sapria himalayana HOM05D002116 ORTHO05D002438 1.0e-18 97.4 121 48.8
CANSAT64G0779 Cannabis sativa HOM05D001753 ORTHO05D001718 2.2e-18 96.3 124 45.2
Gohir.A09G131700 Gossypium hirsutum HOM05D001753 ORTHO05D001718 1.1e-17 94.0 89 59.6
SMO356G0490 Selaginella moellendorffii HOM05D001753 ORTHO05D001718 5.5e-17 91.7 135 41.5
Mapoly0013s0164 Marchantia polymorpha HOM05D001753 ORTHO05D001718 1.3e-15 87.0 131 39.7
Atru.chr6.375 Acer truncatum HOM05D001753 ORTHO05D001718 2.3e-15 86.3 90 54.4
Os03g0817200 Oryza sativa ssp. japonica HOM05D001753 ORTHO05D001718 3.9e-15 85.5 130 42.3
Prupe.7G088200 Prunus persica HOM05D001753 ORTHO05D001718 8.7e-15 84.3 89 49.4
AagrBONN_evm.TU.Sc2ySwM_228.149 Anthoceros agrestis HOM05D001753 ORTHO05D001718 2.9e-10 69.3 134 32.8
BraA03t11958Z Brassica rapa HOM05D001753 ORTHO05D001718 3.8e-10 68.9 121 36.4
BcaC01g04854 Brassica carinata HOM05D001753 ORTHO05D001718 5.0e-10 68.6 121 36.4
A03p27460 Brassica napus HOM05D001753 ORTHO05D001718 5.0e-10 68.6 121 36.4
C03p33110 Brassica napus HOM05D001753 ORTHO05D001718 5.0e-10 68.6 121 36.4
BolC3t15637H Brassica oleracea HOM05D001753 ORTHO05D001718 5.0e-10 68.6 121 36.4
Nn1g03219 Nelumbo nucifera HOM05D001753 ORTHO05D272672 4.2e-09 65.5 35 85.7
Thhalv10000183m.g Eutrema salsugineum HOM05D001753 ORTHO05D001718 5.5e-09 65.1 123 35.0
ClCG02G003420 Citrullus lanatus HOM05D001753 ORTHO05D001718 9.4e-09 64.3 128 33.6
AL4G40370 Arabidopsis lyrata HOM05D001753 ORTHO05D001718 1.6e-08 63.5 127 33.1
BcaB01g02951 Brassica carinata HOM05D001753 ORTHO05D001718 1.6e-08 63.5 121 34.7
Pp3c18_20250 Physcomitrium patens HOM05D001753 ORTHO05D001718 1.6e-08 63.5 84 44.0
CARHR245000 Cardamine hirsuta HOM05D001753 ORTHO05D001718 2.1e-08 63.2 127 32.3
Sed0019118 Sechium edule HOM05D001753 ORTHO05D001718 2.1e-08 63.2 128 32.8
AT2G42005 Arabidopsis thaliana HOM05D001753 ORTHO05D001718 2.7e-08 62.8 127 33.1
MELO3C013250.2 Cucumis melo HOM05D001753 ORTHO05D001718 2.7e-08 62.8 128 32.8
CsaV3_7G001900 Cucumis sativus L. HOM05D001753 ORTHO05D001718 2.7e-08 62.8 128 33.6
Sp4g00010 Schrenkiella parvula HOM05D001753 ORTHO05D001718 2.7e-08 62.8 126 32.5
CiPaw.06G115600 Carya illinoinensis HOM05D001753 ORTHO05D001718 3.6e-08 62.4 124 33.1
Carub.0004s2434 Capsella rubella HOM05D001753 ORTHO05D001718 4.6e-08 62.0 128 32.8
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 1.0e-07 60.8 102 37.3
PGR042G1928 Punica granatum HOM05D001753 ORTHO05D001718 1.4e-07 60.5 112 33.9
Cfa005367 Carpinus fangiana HOM05D001753 ORTHO05D001718 1.8e-07 60.1 124 32.3
CiPaw.05G092900 Carya illinoinensis HOM05D001753 ORTHO05D001718 3.0e-07 59.3 124 33.1
Sed0022526 Sechium edule HOM05D001753 ORTHO05D001718 3.0e-07 59.3 129 32.6
PGSC0003DMG400012842 Solanum tuberosum HOM05D001753 ORTHO05D001718 3.0e-07 59.3 116 30.2
CAN.G337.151 Capsicum annuum HOM05D001753 ORTHO05D001718 5.1e-07 58.5 114 32.5
Gohir.A13G065100 Gossypium hirsutum HOM05D001753 ORTHO05D001718 5.1e-07 58.5 132 33.3
PGR042G1545 Punica granatum HOM05D001753 ORTHO05D001718 5.1e-07 58.5 122 34.4
COL.COLO4_34308 Corchorus olitorius HOM05D001753 ORTHO05D001718 6.7e-07 58.2 132 31.8
FAN27G2288 Fragaria x ananassa HOM05D001753 ORTHO05D001718 6.7e-07 58.2 129 32.6
Gohir.D13G056600 Gossypium hirsutum HOM05D001753 ORTHO05D001718 6.7e-07 58.2 132 33.3
Gorai.013G063900 Gossypium raimondii HOM05D001753 ORTHO05D001718 6.7e-07 58.2 132 33.3
PGSC0003DMG400043788 Solanum tuberosum HOM05D001753 ORTHO05D001718 6.7e-07 58.2 129 31.8
HPP92_014563 Vanilla planifolia HOM05D001753 ORTHO05D001718 6.7e-07 58.2 119 35.3
Zm00001eb303770 Zea mays HOM05D001753 ORTHO05D001718 6.7e-07 58.2 60 55.0
Atru.chr5.3534 Acer truncatum HOM05D001753 ORTHO05D001718 1.1e-06 57.4 124 31.5
Duzib248G0393 Durio zibethinus HOM05D001753 ORTHO05D001718 1.1e-06 57.4 132 31.1
QL11p056288 Quercus lobata HOM05D001753 ORTHO05D001718 1.1e-06 57.4 124 33.1
Rhsim11G0197900 Rhododendron simsii HOM05D001753 ORTHO05D001718 1.1e-06 57.4 126 30.2
Solyc10g048180.1 Solanum lycopersicum HOM05D001753 ORTHO05D001718 1.1e-06 57.4 116 31.0
Sopen10g020200 Solanum pennellii HOM05D001753 ORTHO05D001718 1.1e-06 57.4 116 31.0
MSTRG.27616 Avicennia marina HOM05D001753 ORTHO05D001718 2.0e-06 56.6 116 32.8
BcaNung01994 Brassica carinata HOM05D001753 ORTHO05D001718 2.0e-06 56.6 135 33.3
BolC7t46793H Brassica oleracea HOM05D001753 ORTHO05D001718 2.0e-06 56.6 135 33.3
FAN15G3118 Fragaria x ananassa HOM05D001753 ORTHO05D001718 2.5e-06 56.2 129 31.8
Gohir.D03G001300 Gossypium hirsutum HOM05D001753 ORTHO05D001718 2.5e-06 56.2 113 28.3
Thecc.02G145800 Theobroma cacao HOM05D001753 ORTHO05D001718 2.5e-06 56.2 132 32.6
TAR628G1495 Trochodendron aralioides HOM05D001753 ORTHO05D001718 2.5e-06 56.2 130 30.0
Cfa007087 Carpinus fangiana HOM05D001753 ORTHO05D001718 3.3e-06 55.8 115 31.3
MELO3C013498.2 Cucumis melo HOM05D001753 ORTHO05D001718 3.3e-06 55.8 111 34.2
PSO210G1093 Papaver somniferum HOM05D001753 ORTHO05D001718 3.3e-06 55.8 124 29.0
PSO210G1939 Papaver somniferum HOM05D001753 ORTHO05D001718 3.3e-06 55.8 124 29.0
SGA_v2.0_scaffold98G29301 Striga asiatica HOM05D001753 ORTHO05D001718 3.3e-06 55.8 117 31.6
CSS0027657 Camellia sinensis var. sinensis HOM05D001753 ORTHO05D001718 4.3e-06 55.5 131 29.8
CSS0045325 Camellia sinensis var. sinensis HOM05D001753 ORTHO05D001718 4.3e-06 55.5 131 29.8
Peaxi162Scf00003g02813 Petunia axillaris HOM05D001753 ORTHO05D001718 4.3e-06 55.5 129 30.2
Prupe.8G179700 Prunus persica HOM05D001753 ORTHO05D001718 4.3e-06 55.5 129 31.0
Zm00001eb250210 Zea mays HOM05D001753 ORTHO05D001718 4.3e-06 55.5 123 31.7
Duzib132G0143 Durio zibethinus HOM05D001753 ORTHO05D001718 5.7e-06 55.1 116 31.9
FvH4_2g16760 Fragaria vesca HOM05D001753 ORTHO05D001718 5.7e-06 55.1 129 31.8
Nitab4.5_0011705g0010 Nicotiana tabacum HOM05D001753 ORTHO05D001718 5.7e-06 55.1 130 29.2
Potri.004G206800 Populus trichocarpa HOM05D001753 ORTHO05D001718 5.7e-06 55.1 132 28.0
CDE05G2093 Ceratophyllum demersum HOM05D001753 ORTHO05D001718 7.4e-06 54.7 125 30.4
HanXRQChr15g0476441 Helianthus annuus HOM05D001753 ORTHO05D001718 7.4e-06 54.7 134 30.6
Lsat_1_v5_gn_7_1541 Lactuca sativa HOM05D001753 ORTHO05D001718 7.4e-06 54.7 124 32.3
Actinidia17351 Actinidia chinensis HOM05D001753 ORTHO05D001718 9.7e-06 54.3 131 29.8
HanXRQChr14g0442901 Helianthus annuus HOM05D001753 ORTHO05D001718 9.7e-06 54.3 133 28.6
Nn4g24538 Nelumbo nucifera HOM05D001753 ORTHO05D001718 9.7e-06 54.3 130 29.2
Os04g0565500 Oryza sativa ssp. japonica HOM05D001753 ORTHO05D001718 9.7e-06 54.3 122 30.3
Potri.005G102300 Populus trichocarpa HOM05D001753 ORTHO05D001718 9.7e-06 54.3 127 32.3
RcHm_v2.0_Chr2g0097061 Rosa chinensis HOM05D001753 ORTHO05D001718 9.7e-06 54.3 126 30.2
Sabra09G0130400 Salix brachista HOM05D001753 ORTHO05D001718 9.7e-06 54.3 114 28.1


User provided reference genes

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