Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.7e-76 288.5 139 100.0
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 9.1e-56 220.3 113 92.9
Nn3g21207 Nelumbo nucifera HOM05D001540 ORTHO05D001520 1.0e-22 110.5 71 77.5
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 1.2e-18 97.1 57 75.4
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 2.0e-18 96.3 68 67.6
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 5.8e-18 94.7 60 71.7
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 2.2e-17 92.8 67 62.7
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 2.2e-17 92.8 55 78.2
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 4.9e-17 91.7 55 74.5
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 4.9e-17 91.7 64 64.1
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 1.1e-16 90.5 62 64.5
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.4e-16 90.1 55 74.5
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 1.4e-16 90.1 64 64.1
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 3.2e-16 89.0 62 64.5
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 3.2e-16 89.0 52 76.9
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 3.2e-16 89.0 66 65.2
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 9.3e-16 87.4 50 76.0
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.6e-15 86.7 55 74.5
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.6e-15 86.7 50 76.0
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 2.1e-15 86.3 50 76.0
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 2.7e-15 85.9 50 74.0
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.7e-15 85.9 62 61.3
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 4.6e-15 85.1 53 71.7
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 6.0e-15 84.7 62 59.7
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 6.0e-15 84.7 62 59.7
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 6.0e-15 84.7 50 74.0
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 7.8e-15 84.3 51 70.6
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.0e-14 84.0 50 72.0
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 1.3e-14 83.6 54 66.7
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 1.7e-14 83.2 50 70.0
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 2.3e-14 82.8 50 68.0
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 2.3e-14 82.8 72 54.2
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 3.0e-14 82.4 59 59.3
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 3.9e-14 82.0 73 53.4
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 3.9e-14 82.0 54 68.5
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 5.1e-14 81.6 49 75.5
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 8.7e-14 80.9 44 77.3
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 1.5e-13 80.1 50 66.0
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.5e-13 80.1 68 57.4
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.9e-13 79.7 55 61.8
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 1.9e-13 79.7 50 68.0
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.9e-13 79.7 44 75.0
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 1.9e-13 79.7 50 70.0
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 2.5e-13 79.3 44 77.3
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 3.3e-13 79.0 44 72.7
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 4.3e-13 78.6 50 66.0
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 4.3e-13 78.6 73 52.1
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 4.3e-13 78.6 50 70.0
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 4.3e-13 78.6 44 75.0
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 5.6e-13 78.2 50 68.0
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 5.6e-13 78.2 50 68.0
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 5.6e-13 78.2 50 68.0
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 5.6e-13 78.2 50 68.0
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 5.6e-13 78.2 50 68.0
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 5.6e-13 78.2 74 51.4
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 5.6e-13 78.2 50 68.0
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 5.6e-13 78.2 57 59.6
MBI19_g13520_MAGBIO Magnolia biondii HOM05D001540 ORTHO05D001520 5.6e-13 78.2 71 54.9
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 5.6e-13 78.2 44 77.3
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 7.3e-13 77.8 51 62.7
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 7.3e-13 77.8 50 66.0
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 7.3e-13 77.8 53 62.3
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 9.6e-13 77.4 56 62.5
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.3e-12 77.0 50 64.0
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 1.3e-12 77.0 50 66.0
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 1.3e-12 77.0 50 66.0
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.3e-12 77.0 43 76.7
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 1.6e-12 76.6 69 55.1
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.1e-12 76.3 49 69.4
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 3.6e-12 75.5 44 72.7
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 3.6e-12 75.5 50 62.0
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 3.6e-12 75.5 44 72.7
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 4.8e-12 75.1 50 60.0
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 4.8e-12 75.1 50 60.0
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 4.8e-12 75.1 43 72.1
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 4.8e-12 75.1 43 72.1
TAR365G1201 Trochodendron aralioides HOM05D001540 ORTHO05D001520 4.8e-12 75.1 89 46.1
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 6.2e-12 74.7 46 69.6
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 6.2e-12 74.7 50 64.0
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 6.2e-12 74.7 43 72.1
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 6.2e-12 74.7 43 72.1
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 8.1e-12 74.3 57 56.1
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 1.1e-11 73.9 42 73.8
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.4e-11 73.6 49 61.2
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 1.4e-11 73.6 49 65.3
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 1.8e-11 73.2 40 77.5
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 2.4e-11 72.8 51 64.7
TAR362G0210 Trochodendron aralioides HOM05D001540 ORTHO05D001520 2.4e-11 72.8 71 52.1
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 3.1e-11 72.4 42 71.4
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 5.3e-11 71.6 44 65.9
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 6.9e-11 71.2 51 64.7
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 1.2e-10 70.5 40 75.0
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 1.5e-10 70.1 49 63.3
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.5e-10 70.1 39 71.8
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 1.5e-10 70.1 49 57.1
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 2.0e-10 69.7 43 62.8
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 2.0e-10 69.7 44 61.4
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 2.0e-10 69.7 66 50.0
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.6e-10 69.3 39 71.8
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 2.6e-10 69.3 43 62.8
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 3.4e-10 68.9 39 74.4
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 3.4e-10 68.9 56 53.6
TAR636G1465 Trochodendron aralioides HOM05D001540 ORTHO05D001520 3.4e-10 68.9 71 50.7
Nn4g26109 Nelumbo nucifera HOM05D001540 ORTHO05D001520 4.4e-10 68.6 71 49.3
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 4.4e-10 68.6 43 67.4
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 5.8e-10 68.2 51 60.8
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 5.8e-10 68.2 39 69.2
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 5.8e-10 68.2 50 58.0
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 5.8e-10 68.2 39 69.2
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 7.6e-10 67.8 39 66.7
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 9.9e-10 67.4 40 70.0
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.3e-09 67.0 43 65.1
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 1.3e-09 67.0 40 65.0
Aqoxy2G03172 Aquilegia oxysepala HOM05D001540 ORTHO05D001520 1.7e-09 66.6 71 53.5
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 1.7e-09 66.6 40 67.5
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.7e-09 66.6 40 67.5
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.7e-09 66.6 40 67.5
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.2e-09 66.2 40 65.0
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 2.9e-09 65.9 44 59.1
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 2.9e-09 65.9 43 62.8
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 3.8e-09 65.5 48 50.0
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 8.4e-09 64.3 43 60.5
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.1e-08 63.9 40 60.0
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.1e-08 63.9 40 55.0
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.2e-08 62.4 40 62.5
CDE05G0276 Ceratophyllum demersum HOM05D001540 ORTHO05D001520 1.2e-07 60.5 104 35.6
Dinv22920 Davidia involucrata HOM05D001540 ORTHO05D001520 1.6e-07 60.1 71 43.7
PSO210G2393 Papaver somniferum HOM05D001540 ORTHO05D001520 2.1e-07 59.7 92 40.2
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.7e-07 59.3 39 61.5
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 4.6e-07 58.5 41 51.2
CDE11G0177 Ceratophyllum demersum HOM05D001540 ORTHO05D001520 4.6e-07 58.5 103 36.9
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 6.0e-07 58.2 31 74.2
PSO832G0916 Papaver somniferum HOM05D001540 ORTHO05D001520 7.9e-07 57.8 92 39.1
QL03p003637 Quercus lobata HOM05D001540 ORTHO05D001520 1.0e-06 57.4 71 45.1
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 1.7e-06 56.6 40 50.0
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.3e-06 56.2 31 71.0
Actinidia30897 Actinidia chinensis HOM05D001540 ORTHO05D001520 3.9e-06 55.5 84 41.7
Cfa006525 Carpinus fangiana HOM05D001540 ORTHO05D001520 3.9e-06 55.5 95 36.8
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 5.1e-06 55.1 39 53.8
CiPaw.08G167900 Carya illinoinensis HOM05D001540 ORTHO05D001520 6.6e-06 54.7 100 35.0
GSVIVG01022020001 Vitis vinifera HOM05D001540 ORTHO05D001520 6.6e-06 54.7 71 47.9
CANSAT54G2580 Cannabis sativa HOM05D001540 ORTHO05D001520 8.7e-06 54.3 91 39.6


User provided reference genes

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