Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.3e-66 256.1 123 100.0
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.8e-56 221.9 113 92.9
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 4.2e-20 101.7 63 71.4
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 2.7e-19 99.0 54 77.8
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 2.7e-19 99.0 66 66.7
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 3.6e-19 98.6 73 63.0
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 6.1e-19 97.8 70 64.3
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 7.9e-19 97.4 61 72.1
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 1.8e-18 96.3 61 68.9
Nn3g21207 Nelumbo nucifera HOM05D001540 ORTHO05D001520 2.3e-18 95.9 53 88.7
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 2.3e-18 95.9 68 61.8
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 3.9e-18 95.1 72 62.5
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.1e-18 94.7 56 75.0
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 5.1e-18 94.7 70 60.0
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 6.7e-18 94.4 68 61.8
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 2.5e-17 92.4 56 71.4
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 4.3e-17 91.7 81 56.8
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 5.7e-17 91.3 68 58.8
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 5.7e-17 91.3 56 73.2
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 9.7e-17 90.5 56 71.4
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 1.3e-16 90.1 56 67.9
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.3e-16 90.1 56 69.6
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.3e-16 90.1 49 79.6
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.3e-16 90.1 68 57.4
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 1.3e-16 90.1 68 57.4
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 2.8e-16 89.0 56 67.9
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 3.7e-16 88.6 59 62.7
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 4.8e-16 88.2 79 54.4
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 4.8e-16 88.2 61 68.9
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 6.3e-16 87.8 56 64.3
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 6.3e-16 87.8 56 66.1
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 6.3e-16 87.8 55 67.3
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.1e-15 87.0 71 54.9
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.4e-15 86.7 49 75.5
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 2.4e-15 85.9 53 69.8
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 2.4e-15 85.9 49 73.5
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 4.1e-15 85.1 45 73.3
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 4.1e-15 85.1 49 71.4
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 4.1e-15 85.1 45 77.8
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 5.3e-15 84.7 116 40.5
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.9e-15 84.3 56 62.5
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 6.9e-15 84.3 56 62.5
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 6.9e-15 84.3 56 64.3
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 9.1e-15 84.0 50 70.0
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 1.2e-14 83.6 73 53.4
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.5e-14 83.2 58 60.3
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 2.0e-14 82.8 45 73.3
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 2.0e-14 82.8 56 62.5
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.0e-14 82.8 51 66.7
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 2.0e-14 82.8 56 60.7
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 2.0e-14 82.8 45 75.6
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 2.6e-14 82.4 56 62.5
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 2.6e-14 82.4 56 62.5
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 2.6e-14 82.4 56 62.5
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 2.6e-14 82.4 56 62.5
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 2.6e-14 82.4 56 62.5
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 2.6e-14 82.4 75 54.7
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 3.4e-14 82.0 56 60.7
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 3.4e-14 82.0 58 60.3
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 3.4e-14 82.0 69 53.6
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 4.5e-14 81.6 56 58.9
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 4.5e-14 81.6 45 73.3
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 5.9e-14 81.3 56 60.7
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 5.9e-14 81.3 50 68.0
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 5.9e-14 81.3 44 77.3
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 1.0e-13 80.5 49 67.3
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 1.7e-13 79.7 44 72.7
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 1.7e-13 79.7 51 62.7
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.7e-13 79.7 51 64.7
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 1.7e-13 79.7 52 61.5
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 2.2e-13 79.3 49 65.3
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 2.2e-13 79.3 56 60.7
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 2.9e-13 79.0 52 63.5
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.9e-13 79.0 85 45.9
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 2.9e-13 79.0 44 72.7
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 2.9e-13 79.0 45 68.9
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 3.8e-13 78.6 51 60.8
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 3.8e-13 78.6 51 60.8
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 3.8e-13 78.6 56 58.9
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 5.0e-13 78.2 55 61.8
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 8.5e-13 77.4 46 69.6
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 8.5e-13 77.4 41 78.0
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 1.1e-12 77.0 42 71.4
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.1e-12 77.0 52 65.4
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.1e-12 77.0 42 71.4
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.4e-12 76.6 42 71.4
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.4e-12 76.6 50 64.0
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.9e-12 76.3 50 62.0
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.9e-12 76.3 39 76.9
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 2.5e-12 75.9 56 62.5
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 2.5e-12 75.9 66 53.0
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 3.2e-12 75.5 52 65.4
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 3.2e-12 75.5 39 76.9
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 4.2e-12 75.1 52 59.6
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 4.2e-12 75.1 49 57.1
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 5.5e-12 74.7 49 59.2
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 5.5e-12 74.7 41 75.6
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 5.5e-12 74.7 43 72.1
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 7.2e-12 74.3 43 62.8
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 7.2e-12 74.3 39 74.4
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 7.2e-12 74.3 39 74.4
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 7.2e-12 74.3 39 74.4
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 9.4e-12 73.9 39 71.8
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.2e-11 73.6 55 54.5
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.2e-11 73.6 49 57.1
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.6e-11 73.2 56 57.1
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 2.7e-11 72.4 48 58.3
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 3.6e-11 72.0 43 67.4
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 4.7e-11 71.6 41 70.7
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 6.1e-11 71.2 43 65.1
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 7.9e-11 70.9 41 68.3
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.9e-11 70.9 41 68.3
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.9e-11 70.9 41 68.3
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.0e-10 70.5 41 65.9
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.8e-10 69.7 46 60.9
MBI19_g13520_MAGBIO Magnolia biondii HOM05D001540 ORTHO05D001520 3.0e-10 68.9 53 62.3
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 3.0e-10 68.9 41 65.9
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 3.0e-10 68.9 41 61.0
TAR365G1201 Trochodendron aralioides HOM05D001540 ORTHO05D001520 3.0e-10 68.9 71 50.7
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 3.9e-10 68.6 42 61.9
Aqoxy2G03172 Aquilegia oxysepala HOM05D001540 ORTHO05D001520 5.1e-10 68.2 53 64.2
TAR362G0210 Trochodendron aralioides HOM05D001540 ORTHO05D001520 6.7e-10 67.8 53 60.4
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.5e-09 66.6 41 63.4
PSO210G2393 Papaver somniferum HOM05D001540 ORTHO05D001520 4.4e-09 65.1 72 47.2
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 7.4e-09 64.3 41 56.1
PSO832G0916 Papaver somniferum HOM05D001540 ORTHO05D001520 9.7e-09 63.9 72 45.8
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 2.8e-08 62.4 41 53.7
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 8.2e-08 60.8 37 67.6
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 8.2e-08 60.8 37 67.6
Nn4g26109 Nelumbo nucifera HOM05D001540 ORTHO05D001520 8.2e-08 60.8 52 55.8
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.1e-07 58.9 37 64.9
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 5.3e-07 58.2 39 56.4
CDE05G0276 Ceratophyllum demersum HOM05D001540 ORTHO05D001520 7.0e-07 57.8 86 39.5
TAR636G1465 Trochodendron aralioides HOM05D001540 ORTHO05D001520 7.0e-07 57.8 53 54.7
Dinv11275 Davidia involucrata HOM05D001540 ORTHO05D001520 2.0e-06 56.2 51 52.9
Actinidia21084 Actinidia chinensis HOM05D001540 ORTHO05D001520 3.4e-06 55.5 50 52.0
GSVIVG01022020001 Vitis vinifera HOM05D001540 ORTHO05D001520 4.5e-06 55.1 53 54.7
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 7.7e-06 54.3 41 51.2


User provided reference genes

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