Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.7e-256 888.3 476 100.0
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 6.8e-135 485.0 458 57.6
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 8.9e-135 484.6 464 58.2
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 2.9e-133 479.6 463 57.9
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.6e-131 472.2 459 57.7
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.0e-130 469.5 455 56.7
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 9.5e-129 464.5 469 56.7
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.1e-128 463.4 439 57.2
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 4.4e-126 455.7 410 59.0
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 8.4e-125 451.4 462 57.1
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 8.4e-125 451.4 429 56.4
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.6e-123 447.2 433 58.2
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.3e-122 444.1 457 53.0
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.0e-122 443.0 453 54.3
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 3.9e-122 442.6 443 54.4
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.9e-121 440.3 453 53.6
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 2.5e-121 439.9 434 57.1
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 9.6e-121 438.0 460 53.5
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.2e-120 437.6 457 53.0
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.6e-120 436.0 457 56.5
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 4.7e-120 435.6 457 55.4
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 6.2e-120 435.3 460 55.4
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.1e-119 434.5 463 53.6
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 5.2e-119 432.2 434 56.2
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 3.4e-118 429.5 427 53.6
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.4e-118 429.1 457 56.5
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.7e-117 427.2 461 56.0
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.1e-116 424.5 459 52.1
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.4e-116 424.1 460 51.3
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.9e-116 423.7 465 53.8
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 2.4e-116 423.3 478 52.5
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.7e-115 419.9 458 52.6
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 3.5e-115 419.5 424 52.1
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.0e-114 417.9 246 96.7
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 6.6e-114 415.2 456 50.4
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 2.5e-113 413.3 458 55.0
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 3.3e-113 412.9 469 50.3
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 5.6e-113 412.1 430 52.1
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 9.6e-113 411.4 456 51.1
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 9.6e-113 411.4 437 55.6
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.3e-112 411.0 450 53.6
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 4.8e-112 409.1 456 49.6
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.9e-111 405.2 428 49.3
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.5e-110 404.1 462 51.7
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.5e-110 404.1 457 49.9
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.5e-110 404.1 457 49.9
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.5e-110 404.1 463 50.8
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 7.6e-110 401.7 473 49.0
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 9.9e-110 401.4 436 53.2
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 1.3e-109 401.0 454 50.4
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 2.2e-109 400.2 463 51.2
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 2.2e-109 400.2 509 46.2
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 2.9e-109 399.8 459 51.0
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.8e-109 399.4 428 50.0
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 6.4e-109 398.7 463 50.1
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.4e-108 397.5 453 51.7
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.2e-107 394.4 467 51.6
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.6e-107 394.0 465 50.5
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.7e-107 393.3 462 50.0
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 6.0e-107 392.1 466 50.2
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 7.9e-107 391.7 449 50.8
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 7.9e-107 391.7 458 49.6
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 1.0e-106 391.3 465 49.0
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.3e-106 391.0 456 48.9
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.3e-106 391.0 470 47.4
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 3.0e-106 389.8 372 56.7
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 6.7e-106 388.7 459 48.4
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.1e-105 387.9 461 50.5
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 2.5e-105 386.7 457 49.9
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 1.3e-104 384.4 463 49.0
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.6e-104 384.0 469 47.3
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 8.1e-104 381.7 425 49.9
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 6.9e-103 378.6 470 49.6
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 5.8e-102 375.6 451 50.1
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.8e-101 372.9 454 47.1
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 6.4e-101 372.1 461 47.1
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 6.4e-101 372.1 456 48.5
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.4e-100 370.9 473 47.6
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.9e-100 370.5 454 46.9
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 7.1e-100 368.6 454 46.7
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.6e-99 367.5 461 48.2
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 4.6e-99 365.9 458 45.9
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 7.9e-99 365.2 461 50.3
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.0e-98 364.8 429 49.4
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.3e-98 364.4 470 45.3
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.3e-98 363.6 454 45.8
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 3.9e-98 362.8 443 46.0
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.9e-97 360.5 467 45.6
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 3.3e-97 359.8 463 49.7
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 4.3e-97 359.4 460 45.4
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 2.1e-96 357.1 472 44.3
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 2.8e-96 356.7 460 44.6
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 6.2e-96 355.5 480 43.3
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 2.4e-95 353.6 471 43.5
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.4e-95 353.6 435 51.0
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.1e-95 353.2 428 45.6
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 6.9e-95 352.1 445 49.4
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 6.9e-95 352.1 428 45.1
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 9.0e-95 351.7 460 45.0
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 1.2e-94 351.3 471 43.5
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.5e-94 350.9 453 46.8
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 2.6e-94 350.1 470 43.2
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 5.8e-94 349.0 454 46.0
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 7.6e-94 348.6 467 44.3
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.0e-93 348.2 471 43.3
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 4.9e-93 345.9 470 43.2
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 4.6e-91 339.3 454 44.9
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 6.7e-90 335.5 469 42.9
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.5e-89 333.6 469 46.7
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 7.4e-89 332.0 469 46.3
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.3e-88 331.3 469 46.3
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.2e-86 324.7 390 50.0
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.7e-85 320.9 457 44.9
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 2.2e-85 320.5 452 44.2
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 3.8e-85 319.7 456 42.5
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 8.5e-85 318.5 469 39.9
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.1e-84 318.2 470 40.9
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 1.1e-81 308.1 472 40.0
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.9e-81 307.4 471 38.9
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 9.7e-81 305.1 434 43.1
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 5.3e-79 299.3 459 44.0
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.2e-76 290.0 273 56.0
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.3e-74 283.9 395 40.0
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.0e-74 283.5 210 71.4
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.5e-70 271.2 429 39.9
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 1.9e-68 264.2 464 38.1
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 1.4e-66 258.1 472 36.7
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.0e-61 241.9 430 39.1
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.3e-58 230.7 226 58.4
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.5e-57 228.0 408 37.7
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 3.3e-57 226.9 147 78.2
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.3e-53 214.9 359 37.9
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.2e-52 209.9 253 49.8
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 5.5e-52 209.5 250 50.0
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.0e-50 205.3 143 69.9
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.8e-48 197.2 164 68.3
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.3e-45 188.3 179 58.1
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 6.1e-43 179.5 434 30.0
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.8e-40 170.6 135 63.0
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.7e-40 170.2 149 57.0
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.1e-39 168.7 396 31.1
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 1.1e-39 168.7 420 29.0
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 1.1e-36 158.7 444 27.7
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.2e-35 155.2 447 29.8
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 3.6e-35 153.7 443 26.9
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.7e-32 144.8 128 65.6
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 4.6e-30 136.7 143 46.9
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 3.3e-28 130.6 157 44.6
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.8e-26 124.8 143 46.2
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 1.1e-23 115.5 419 24.6
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.4e-23 114.4 135 44.4
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.3e-20 103.6 103 53.4
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 8.1e-19 99.4 134 41.0
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 1.1e-18 99.0 217 30.9
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.4e-18 98.6 123 46.3
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 3.1e-18 97.4 123 44.7
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 2.0e-17 94.7 123 42.3
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 1.3e-16 92.0 73 63.0
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 2.9e-16 90.9 95 53.7
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 6.4e-16 89.7 125 45.6
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 1.9e-15 88.2 174 33.3
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.9e-15 88.2 381 25.2
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.6e-14 85.1 129 42.6
AagrBONN_evm.TU.Sc2ySwM_228.1577 Anthoceros agrestis HOM05D003578 ORTHO05D004021 3.0e-13 80.9 262 24.4
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.6e-11 75.1 65 58.5
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.6e-11 75.1 65 58.5
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 2.8e-11 74.3 86 41.9
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 8.1e-11 72.8 80 45.0
Actinidia17466 Actinidia chinensis HOM05D003578 ORTHO05D004021 7.8e-06 56.2 146 32.2


User provided reference genes

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