Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08564 Nelumbo nucifera HOM05D008075 ORTHO05D010208 0.0e+00 2227.6 1109 100.0
Nn5g27987 Nelumbo nucifera HOM05D008075 ORTHO05D010208 5.0e-221 772.3 1421 39.5
TAR376G0152 Trochodendron aralioides HOM05D008075 ORTHO05D010208 4.9e-192 676.0 1174 41.7
MBI03_g11141_MAGBIO Magnolia biondii HOM05D008075 ORTHO05D010208 1.5e-105 388.7 349 61.3
Dinv08171 Davidia involucrata HOM05D008075 ORTHO05D010208 3.2e-103 380.9 569 43.9
GSVIVG01022404001 Vitis vinifera HOM05D008075 ORTHO05D010208 1.6e-94 352.1 473 46.3
Aqoxy2G00609 Aquilegia oxysepala HOM05D008075 ORTHO05D010208 4.8e-91 340.5 364 55.5
CSS0037312 Camellia sinensis var. sinensis HOM05D008075 ORTHO05D010208 5.9e-81 307.0 529 41.2
Rhsim08G0001000 Rhododendron simsii HOM05D008075 ORTHO05D010208 2.9e-80 304.7 463 42.5
QL10p040186 Quercus lobata HOM05D008075 ORTHO05D010208 6.6e-80 303.5 744 34.8
Potri.004G140000 Populus trichocarpa HOM05D008075 ORTHO05D010208 2.1e-78 298.5 389 49.1
Sabra04G0092100 Salix brachista HOM05D008075 ORTHO05D010208 2.3e-77 295.0 396 48.0
PSO782G2813 Papaver somniferum HOM05D008075 ORTHO05D010208 8.9e-77 293.1 244 66.0
PSO170G3563 Papaver somniferum HOM05D008075 ORTHO05D010208 2.4e-74 285.0 241 65.1
TWI75G0788 Tripterygium wilfordii HOM05D008075 ORTHO05D010208 2.4e-74 285.0 474 41.1
CiPaw.03G254600 Carya illinoinensis HOM05D008075 ORTHO05D010208 5.9e-73 280.4 582 38.0
Cc02_g33950 Coffea canephora HOM05D008075 ORTHO05D010208 5.9e-73 280.4 252 62.7
Nitab4.5_0005586g0040 Nicotiana tabacum HOM05D008075 ORTHO05D010208 5.0e-72 277.3 475 42.5
ATR0171G010 Amborella trichopoda HOM05D008075 ORTHO05D010208 2.1e-70 271.9 255 60.4
Ciclev10024878m.g Citrus clementina HOM05D008075 ORTHO05D010208 6.2e-70 270.4 679 33.4
Oeu011019.1 Olea europaea HOM05D002427 ORTHO05D002818 4.0e-69 267.7 227 63.4
Peaxi162Scf00658g00065 Petunia axillaris HOM05D008075 ORTHO05D010208 1.2e-68 266.2 469 40.7
HPP92_002184 Vanilla planifolia HOM05D008075 ORTHO05D010208 1.2e-68 266.2 291 55.3
Sopen08g028360 Solanum pennellii HOM05D008075 ORTHO05D010208 3.7e-67 261.2 322 49.7
Solyc08g080000.3 Solanum lycopersicum HOM05D008075 ORTHO05D010208 4.9e-67 260.8 322 49.4
Os03g0703300 Oryza sativa ssp. japonica HOM05D008075 ORTHO05D010208 2.4e-66 258.5 239 58.6
PGSC0003DMG400022727 Solanum tuberosum HOM05D008075 ORTHO05D010208 9.2e-66 256.5 627 35.9
Glyma.05G197100 Glycine max HOM05D008075 ORTHO05D010208 2.7e-65 255.0 405 43.5
Zm00001eb054280 Zea mays HOM05D008075 ORTHO05D010208 6.0e-65 253.8 243 56.0
Nitab4.5_0000947g0070 Nicotiana tabacum HOM05D008075 ORTHO05D010208 5.0e-64 250.8 637 35.6
HanXRQChr15g0468991 Helianthus annuus HOM05D008075 ORTHO05D010208 8.6e-64 250.0 251 55.0
SGA_v2.0_scaffold54G19596 Striga asiatica HOM05D008075 ORTHO05D010208 3.3e-63 248.1 244 57.8
Migut.H00807 Erythranthe guttata HOM05D008075 ORTHO05D010208 4.3e-63 247.7 261 56.7
Glyma.08G004500 Glycine max HOM05D008075 ORTHO05D010208 4.3e-63 247.7 695 32.4
Lj4g0013275 Lotus japonicus HOM05D008075 ORTHO05D010208 5.6e-63 247.3 324 48.5
Manes.12G084200 Manihot esculenta HOM05D008075 ORTHO05D010208 2.1e-62 245.4 310 50.0
ECA233G5565 Erigeron canadensis HOM05D008075 ORTHO05D010208 4.0e-61 241.1 215 59.1
TPR.G33422 Trifolium pratense HOM05D008075 ORTHO05D010208 5.2e-61 240.7 341 44.9
VMungo0251G2353 Vigna mungo HOM05D008075 ORTHO05D010208 6.8e-61 240.4 307 47.9
Sc09g0004370 Simmondsia chinensis HOM05D008075 ORTHO05D010208 1.5e-60 239.2 317 47.3
Medtr8g095160 Medicago truncatula HOM05D008075 ORTHO05D010208 1.3e-59 236.1 211 60.2
Lsat_1_v5_gn_5_69300 Lactuca sativa HOM05D008075 ORTHO05D010208 2.2e-59 235.3 234 56.4
THA.LOC104819473 Tarenaya hassleriana HOM05D008075 ORTHO05D010208 2.2e-59 235.3 355 42.8
Phvul.002G277500 Phaseolus vulgaris HOM05D008075 ORTHO05D010208 1.6e-57 229.2 297 46.1
Psat7g041720 Pisum sativum HOM05D008075 ORTHO05D010208 7.8e-57 226.9 340 45.3
arahy.Tifrunner.gnm1.ann1.F3CBX5 Arachis hypogaea HOM05D008075 ORTHO05D010208 1.5e-55 222.6 261 49.8
SalBow1G7185 Salvia bowleyana HOM05D008075 ORTHO05D010208 7.3e-55 220.3 244 53.3
AUR62039042 Chenopodium quinoa HOM05D008075 ORTHO05D010208 8.1e-54 216.9 230 53.5
Hund06889 Selenicereus undatus HOM05D008075 ORTHO05D010208 1.4e-53 216.1 216 56.0
Ca_17596_v3 Cicer arietinum L. HOM05D000484 ORTHO05D010208 6.8e-53 213.8 201 58.2
arahy.Tifrunner.gnm1.ann1.BIR6X5 Arachis hypogaea HOM05D008075 ORTHO05D010208 1.2e-52 213.0 278 47.1
EL10Ac4g08956 Beta vulgaris HOM05D008075 ORTHO05D010208 1.2e-52 213.0 215 54.9
Lalb_Chr12g0202841 Lupinus albus HOM05D008075 ORTHO05D010208 7.6e-52 210.3 316 43.4
Ah.06g191710 Amaranthus hybridus HOM05D008075 ORTHO05D010208 6.4e-51 207.2 233 50.6
Nn5g27981 Nelumbo nucifera HOM05D008075 ORTHO05D010208 2.8e-46 191.8 153 65.4
AUR62004796 Chenopodium quinoa HOM05D008075 ORTHO05D010208 4.2e-42 177.9 216 49.5
SEGI_31365 Sequoiadendron giganteum HOM05D008075 ORTHO05D010208 1.2e-41 176.4 238 45.4
CAN.G630.6 Capsicum annuum HOM05D008075 ORTHO05D010208 5.1e-40 171.0 197 54.3
SMO266G0073 Selaginella moellendorffii HOM05D008075 ORTHO05D010208 6.4e-35 154.1 176 48.9
Mapoly0089s0038 Marchantia polymorpha HOM05D008075 ORTHO05D010208 1.0e-32 146.7 181 42.5
Pp3c6_3110 Physcomitrium patens HOM05D008075 ORTHO05D010208 3.1e-29 135.2 159 45.3
Pp3c16_21630 Physcomitrium patens HOM05D008075 ORTHO05D010208 4.9e-27 127.9 192 38.5
Pp3c6_900 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.9e-23 115.9 179 40.2
Pp3c6_920 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.9e-23 115.9 179 40.2
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 5.8e-20 104.4 177 46.3
Nn5g27982 Nelumbo nucifera HOM05D008075 ORTHO05D010208 1.2e-17 96.7 331 30.8
VMungo0251G2339 Vigna mungo HOM05D008075 ORTHO05D010208 1.6e-14 86.3 309 28.5
CBR_g31168 Chara braunii HOM05D008075 ORTHO05D010208 4.1e-13 81.6 141 31.2
AagrBONN_evm.TU.Sc2ySwM_362.1056 Anthoceros agrestis HOM05D008075 ORTHO05D010208 1.4e-10 73.2 141 31.2
CBR_g10951 Chara braunii HOM05D008075 ORTHO05D010208 1.4e-10 73.2 156 28.2
HanXRQChr07g0199571 Helianthus annuus HOM05D008075 ORTHO05D010208 1.2e-09 70.1 47 68.1
HanXRQChr10g0307451 Helianthus annuus HOM05D008075 ORTHO05D010208 6.7e-08 64.3 48 62.5
MSTRG.23496 Avicennia marina HOM05D008075 ORTHO05D010208 2.8e-06 58.9 104 45.2


User provided reference genes

Program Settings