Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08556 Nelumbo nucifera HOM05D003357 ORTHO05D003779 2.7e-54 215.7 168 100.0
Nn5g27960 Nelumbo nucifera HOM05D003357 ORTHO05D003779 4.5e-17 92.0 67 70.1
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 1.1e-10 70.9 69 58.0
arahy.Tifrunner.gnm1.ann1.11V3F3 Arachis hypogaea HOM05D003357 ORTHO05D003779 1.1e-10 70.9 69 58.0
TAR197G0001 Trochodendron aralioides HOM05D003357 ORTHO05D003779 1.1e-10 70.9 68 60.3
arahy.Tifrunner.gnm1.ann1.I2CYKQ Arachis hypogaea HOM05D003357 ORTHO05D003779 1.8e-10 70.1 69 56.5
Lj5C246T11 Lonicera japonica HOM05D003357 ORTHO05D003779 1.8e-10 70.1 68 57.4
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 3.2e-10 69.3 71 54.9
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 3.2e-10 69.3 74 54.1
TPR.G19716 Trifolium pratense HOM05D003357 ORTHO05D003779 7.0e-10 68.2 67 56.7
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 9.2e-10 67.8 67 58.2
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 9.2e-10 67.8 67 58.2
MELO3C012699.2 Cucumis melo HOM05D003357 ORTHO05D003779 9.2e-10 67.8 67 58.2
Medtr2g007830 Medicago truncatula HOM05D003357 ORTHO05D003779 9.2e-10 67.8 69 53.6
Phvul.006G211600 Phaseolus vulgaris HOM05D003357 ORTHO05D003779 1.2e-09 67.4 67 58.2
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 1.6e-09 67.0 68 55.9
TWI14G1244 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 2.0e-09 66.6 75 50.7
CAN.G1352.13 Capsicum annuum HOM05D003357 ORTHO05D003779 4.6e-09 65.5 68 52.9
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 4.6e-09 65.5 68 52.9
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 4.6e-09 65.5 68 52.9
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 4.6e-09 65.5 68 52.9
CsaV3_7G022210 Cucumis sativus L. HOM05D003357 ORTHO05D003779 5.9e-09 65.1 64 59.4
Hma1.2p1_0704F.1_g206850 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 5.9e-09 65.1 70 52.9
TWI23G0276 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 5.9e-09 65.1 75 49.3
Nitab4.5_0003071g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.0e-08 64.3 68 51.5
Nitab4.5_0009907g0030 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.0e-08 64.3 68 51.5
VMungo0540G1809 Vigna mungo HOM05D003357 ORTHO05D003779 1.0e-08 64.3 67 53.7
CSS0044852 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 1.3e-08 63.9 71 50.7
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 1.3e-08 63.9 75 49.3
Ca_00094_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 1.3e-08 63.9 67 53.7
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 1.3e-08 63.9 67 53.7
Haze_01610 Corylus avellana HOM05D003357 ORTHO05D003779 1.3e-08 63.9 75 49.3
Haze_01612 Corylus avellana HOM05D003357 ORTHO05D003779 1.3e-08 63.9 75 49.3
DCAR_021821 Daucus carota HOM05D003357 ORTHO05D003779 1.3e-08 63.9 68 52.9
Gohir.D02G232200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.3e-08 63.9 78 52.6
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 1.3e-08 63.9 68 52.9
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 2.3e-08 63.2 75 49.3
Cpa.g.sc2.31 Carica papaya HOM05D003357 ORTHO05D003779 3.0e-08 62.8 75 50.7
Glyma.08G184000 Glycine max HOM05D003357 ORTHO05D003779 3.0e-08 62.8 67 55.2
vmacro01792 Vaccinium macrocarpon HOM05D003357 ORTHO05D003779 3.0e-08 62.8 80 50.0
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 3.9e-08 62.4 74 51.4
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 3.9e-08 62.4 77 51.9
Gorai.005G260000 Gossypium raimondii HOM05D003357 ORTHO05D003779 3.9e-08 62.4 77 51.9
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 3.9e-08 62.4 67 50.7
Sed0004213 Sechium edule HOM05D003357 ORTHO05D003779 5.0e-08 62.0 76 47.4
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 8.6e-08 61.2 77 46.8
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 8.6e-08 61.2 78 50.0
THA.LOC104805045 Tarenaya hassleriana HOM05D003357 ORTHO05D003779 8.6e-08 61.2 73 47.9
Thecc.02G042200 Theobroma cacao HOM05D003357 ORTHO05D003779 8.6e-08 61.2 78 50.0
Duzib052G0578 Durio zibethinus HOM05D003357 ORTHO05D003779 1.1e-07 60.8 78 48.7
Manes.07G012600 Manihot esculenta HOM05D003357 ORTHO05D003779 1.1e-07 60.8 76 51.3
CSS0046968 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 1.5e-07 60.5 67 55.2
ClCG05G009890 Citrullus lanatus HOM05D003357 ORTHO05D003779 1.5e-07 60.5 76 46.1
SGA_v2.0_scaffold1G00338 Striga asiatica HOM05D003357 ORTHO05D003779 1.5e-07 60.5 68 52.9
Migut.B00658 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.9e-07 60.1 68 51.5
Gohir.A01G001200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.9e-07 60.1 78 47.4
Gorai.002G001400 Gossypium raimondii HOM05D003357 ORTHO05D003779 1.9e-07 60.1 78 47.4
Sc02g0001800 Simmondsia chinensis HOM05D003357 ORTHO05D003779 1.9e-07 60.1 78 47.4
MELO3C031692.2 Cucumis melo HOM05D003357 ORTHO05D003779 2.5e-07 59.7 79 44.3
Glyma.15G048800 Glycine max HOM05D003357 ORTHO05D003779 2.5e-07 59.7 64 53.1
Potri.003G021934 Populus trichocarpa HOM05D003357 ORTHO05D003779 3.3e-07 59.3 78 48.7
EL10Ac9g22198 Beta vulgaris HOM05D003357 ORTHO05D003779 4.3e-07 58.9 63 52.4
Thhalv10001009m.g Eutrema salsugineum HOM05D003357 ORTHO05D003779 4.3e-07 58.9 71 47.9
Gohir.D01G000900 Gossypium hirsutum HOM05D003357 ORTHO05D003779 4.3e-07 58.9 78 46.2
Lsat_1_v5_gn_7_78341 Lactuca sativa HOM05D003357 ORTHO05D003779 4.3e-07 58.9 66 47.0
SalBow5G0183 Salvia bowleyana HOM05D003357 ORTHO05D003779 4.3e-07 58.9 68 51.5
SalBow5G2536 Salvia bowleyana HOM05D003357 ORTHO05D003779 4.3e-07 58.9 68 51.5
Lsat_1_v5_gn_5_107641 Lactuca sativa HOM05D003357 ORTHO05D003779 5.6e-07 58.5 72 44.4
Oeu041075.1 Olea europaea HOM05D003357 ORTHO05D003779 5.6e-07 58.5 68 52.9
PSO017G4220 Papaver somniferum HOM05D003357 ORTHO05D003779 5.6e-07 58.5 74 48.6
PSO170G2411 Papaver somniferum HOM05D003357 ORTHO05D003779 5.6e-07 58.5 74 48.6
Sabra03G0013900 Salix brachista HOM05D003357 ORTHO05D003779 5.6e-07 58.5 78 48.7
HanXRQChr10g0300241 Helianthus annuus HOM05D003357 ORTHO05D003779 7.3e-07 58.2 71 45.1
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 7.3e-07 58.2 72 45.8
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 9.5e-07 57.8 67 49.3
Nitab4.5_0000078g0390 Nicotiana tabacum HOM05D003357 ORTHO05D003779 9.5e-07 57.8 70 50.0
Nitab4.5_0003615g0040 Nicotiana tabacum HOM05D003357 ORTHO05D003779 9.5e-07 57.8 69 49.3
BcaC06g34220 Brassica carinata HOM05D003357 ORTHO05D003779 1.2e-06 57.4 72 48.6
A06p44690 Brassica napus HOM05D003357 ORTHO05D003779 1.2e-06 57.4 72 48.6
BolC7t43694H Brassica oleracea HOM05D003357 ORTHO05D003779 1.2e-06 57.4 72 48.6
BraA06t27342Z Brassica rapa HOM05D003357 ORTHO05D003779 1.2e-06 57.4 72 48.6
CARHR143630 Cardamine hirsuta HOM05D003357 ORTHO05D003779 1.2e-06 57.4 66 50.0
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 1.2e-06 57.4 70 52.9
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 1.2e-06 57.4 64 46.9
arahy.Tifrunner.gnm1.ann1.GBW8AP Arachis hypogaea HOM05D003357 ORTHO05D003779 1.6e-06 57.0 68 47.1
arahy.Tifrunner.gnm1.ann1.S31UIX Arachis hypogaea HOM05D003357 ORTHO05D003779 1.6e-06 57.0 68 47.1
HanXRQChr16g0514191 Helianthus annuus HOM05D003357 ORTHO05D003779 1.6e-06 57.0 79 40.5
Manes.10G133000 Manihot esculenta HOM05D003357 ORTHO05D003779 1.6e-06 57.0 80 45.0
MSTRG.5244 Avicennia marina HOM05D003357 ORTHO05D003779 2.1e-06 56.6 68 50.0
Manes.03G085403 Manihot esculenta HOM05D003357 ORTHO05D003779 2.1e-06 56.6 80 45.0
Manes.03G114750 Manihot esculenta HOM05D003357 ORTHO05D003779 2.1e-06 56.6 80 45.0
Manes.07G113500 Manihot esculenta HOM05D003357 ORTHO05D003779 2.1e-06 56.6 80 45.0
Manes.12G086500 Manihot esculenta HOM05D003357 ORTHO05D003779 2.1e-06 56.6 80 45.0
Manes.18G118000 Manihot esculenta HOM05D003357 ORTHO05D003779 2.1e-06 56.6 80 45.0
Atru.chr6.1007 Acer truncatum HOM05D003357 ORTHO05D003779 2.8e-06 56.2 75 46.7
Carub.0005s0007 Capsella rubella HOM05D003357 ORTHO05D003779 2.8e-06 56.2 69 52.2
Dinv19344 Davidia involucrata HOM05D003357 ORTHO05D003779 2.8e-06 56.2 72 48.6
Peaxi162Scf00003g03752 Petunia axillaris HOM05D003357 ORTHO05D003779 2.8e-06 56.2 68 48.5
SGA_v2.0_scaffold110G31275 Striga asiatica HOM05D003357 ORTHO05D003779 2.8e-06 56.2 66 53.0
AL5G10030 Arabidopsis lyrata HOM05D003357 ORTHO05D003779 3.6e-06 55.8 69 52.2
AT2G01080 Arabidopsis thaliana HOM05D003357 ORTHO05D003779 3.6e-06 55.8 69 52.2
A02p31650 Brassica napus HOM05D003357 ORTHO05D003779 3.6e-06 55.8 71 47.9
C02p48990 Brassica napus HOM05D003357 ORTHO05D003779 3.6e-06 55.8 71 47.9
BolC2t10993H Brassica oleracea HOM05D003357 ORTHO05D003779 3.6e-06 55.8 71 47.9
BraA02t08168Z Brassica rapa HOM05D003357 ORTHO05D003779 3.6e-06 55.8 71 47.9
Duzib248G1129 Durio zibethinus HOM05D003357 ORTHO05D003779 3.6e-06 55.8 78 43.6
Manes.01G111900 Manihot esculenta HOM05D003357 ORTHO05D003779 3.6e-06 55.8 80 45.0
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 4.7e-06 55.5 69 49.3
Migut.N01027 Erythranthe guttata HOM05D003357 ORTHO05D003779 4.7e-06 55.5 68 45.6
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 4.7e-06 55.5 80 41.2
Sp2g12550 Schrenkiella parvula HOM05D003357 ORTHO05D003779 4.7e-06 55.5 71 47.9
AUR62027010 Chenopodium quinoa HOM05D003357 ORTHO05D003779 6.2e-06 55.1 62 50.0
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 6.2e-06 55.1 62 50.0


User provided reference genes

Program Settings