Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08539 Nelumbo nucifera HOM05D007182 ORTHO05D008919 8.1e-100 367.1 186 100.0
Nn5g27955 Nelumbo nucifera HOM05D007182 ORTHO05D008919 1.3e-57 226.9 186 61.8
TAR127G0001 Trochodendron aralioides HOM05D007182 ORTHO05D008919 5.3e-35 151.8 179 51.4
TAR628G0731 Trochodendron aralioides HOM05D007182 ORTHO05D008919 1.3e-33 147.1 163 52.8
TAR197G0002 Trochodendron aralioides HOM05D007182 ORTHO05D008919 5.5e-32 141.7 180 46.7
Duzib041G0557 Durio zibethinus HOM05D007182 ORTHO05D008919 1.0e-25 120.9 198 37.9
Duzib093G0280 Durio zibethinus HOM05D007182 ORTHO05D008919 2.5e-24 116.3 190 38.9
Potri.002G089650 Populus trichocarpa HOM05D007182 ORTHO05D008919 7.2e-24 114.8 198 36.4
Dinv26722 Davidia involucrata HOM05D007182 ORTHO05D008919 1.6e-23 113.6 129 49.6
Thecc.08G116300 Theobroma cacao HOM05D007182 ORTHO05D008919 2.1e-23 113.2 198 35.9
CiPaw.05G229300 Carya illinoinensis HOM05D007182 ORTHO05D008919 8.0e-23 111.3 207 40.1
Lj1g0017374 Lotus japonicus HOM05D007182 ORTHO05D008919 8.0e-23 111.3 217 35.0
Phvul.008G168400 Phaseolus vulgaris HOM05D007182 ORTHO05D008919 1.0e-22 110.9 194 37.6
Manes.18G072600 Manihot esculenta HOM05D007182 ORTHO05D008919 1.4e-22 110.5 196 37.8
Manes.02G158600 Manihot esculenta HOM05D007182 ORTHO05D008919 1.8e-22 110.2 195 35.9
CiPaw.06G024500 Carya illinoinensis HOM05D007182 ORTHO05D008919 2.3e-22 109.8 225 36.4
Gohir.D06G041600 Gossypium hirsutum HOM05D007182 ORTHO05D008919 3.0e-22 109.4 203 34.5
Sopen11g008530 Solanum pennellii HOM05D007182 ORTHO05D008919 3.0e-22 109.4 185 38.4
Duzib116G0693 Durio zibethinus HOM05D007182 ORTHO05D008919 4.0e-22 109.0 192 36.5
Gohir.A06G040600 Gossypium hirsutum HOM05D007182 ORTHO05D008919 4.0e-22 109.0 201 34.3
Gorai.010G046800 Gossypium raimondii HOM05D007182 ORTHO05D008919 4.0e-22 109.0 203 34.5
Solyc11g013500.1 Solanum lycopersicum HOM05D007182 ORTHO05D008919 4.0e-22 109.0 185 38.4
Atru.chr13.1314 Acer truncatum HOM05D007182 ORTHO05D008919 2.0e-21 106.7 197 35.5
Atru.chr13.1358 Acer truncatum HOM05D007182 ORTHO05D008919 2.0e-21 106.7 197 35.5
Sabra05G0129100 Salix brachista HOM05D007182 ORTHO05D008919 3.4e-21 105.9 192 38.0
Psat5g134040 Pisum sativum HOM05D007182 ORTHO05D008919 9.8e-21 104.4 197 38.1
Medtr3g073330 Medicago truncatula HOM05D007182 ORTHO05D008919 1.3e-20 104.0 202 35.6
RcHm_v2.0_Chr7g0240831 Rosa chinensis HOM05D007182 ORTHO05D008919 2.2e-20 103.2 185 38.4
Glyma.13G084500 Glycine max HOM05D007182 ORTHO05D008919 2.8e-20 102.8 205 34.6
Hma1.2p1_0221F.1_g093130 Hydrangea macrophylla HOM05D007182 ORTHO05D008919 3.7e-20 102.4 174 40.8
Sabra02G0070600 Salix brachista HOM05D007182 ORTHO05D008919 3.7e-20 102.4 173 38.7
PGSC0003DMG400027800 Solanum tuberosum HOM05D007182 ORTHO05D008919 6.3e-20 101.7 189 34.4
Glyma.14G166200 Glycine max HOM05D007182 ORTHO05D008919 8.3e-20 101.3 186 36.0
TWI36G1401 Tripterygium wilfordii HOM05D007182 ORTHO05D008919 1.1e-19 100.9 203 36.9
Phvul.009G025900 Phaseolus vulgaris HOM05D007182 ORTHO05D008919 2.4e-19 99.8 210 34.3
Eucgr.F03740 Eucalyptus grandis HOM05D007182 ORTHO05D008919 3.1e-19 99.4 187 35.3
Potri.005G171600 Populus trichocarpa HOM05D007182 ORTHO05D008919 3.1e-19 99.4 185 38.9
VMungo0647G1564 Vigna mungo HOM05D007182 ORTHO05D008919 4.1e-19 99.0 188 36.2
MELO3C022789.2 Cucumis melo HOM05D007182 ORTHO05D008919 7.0e-19 98.2 217 34.6
Oeu043797.1 Olea europaea HOM05D000316 ORTHO05D008919 9.2e-19 97.8 154 41.6
Oeu043798.1 Olea europaea HOM05D000316 ORTHO05D008919 9.2e-19 97.8 154 41.6
ClCG03G009070 Citrullus lanatus HOM05D007182 ORTHO05D008919 2.7e-18 96.3 211 34.1
Thhalv10004990m.g Eutrema salsugineum HOM05D007182 ORTHO05D008919 2.7e-18 96.3 182 35.2
Glyma.06G108400 Glycine max HOM05D007182 ORTHO05D008919 2.7e-18 96.3 214 34.1
TPR.G30417 Trifolium pratense HOM05D007182 ORTHO05D008919 3.5e-18 95.9 203 36.0
TPR.G32946 Trifolium pratense HOM05D007182 ORTHO05D008919 3.5e-18 95.9 201 32.8
COL.COLO4_21819 Corchorus olitorius HOM05D007182 ORTHO05D008919 4.5e-18 95.5 199 32.2
Medtr5g060450 Medicago truncatula HOM05D007182 ORTHO05D008919 4.5e-18 95.5 177 35.6
AT1G36940 Arabidopsis thaliana HOM05D007182 ORTHO05D008919 5.9e-18 95.1 175 33.7
Ciclev10002385m.g Citrus clementina HOM05D007182 ORTHO05D008919 7.8e-18 94.7 219 29.7
Lalb_Chr11g0065671 Lupinus albus HOM05D007182 ORTHO05D008919 7.8e-18 94.7 212 30.7
Gorai.009G242300 Gossypium raimondii HOM05D007182 ORTHO05D008919 1.0e-17 94.4 191 33.5
AL1G51080 Arabidopsis lyrata HOM05D007182 ORTHO05D008919 1.3e-17 94.0 175 34.3
Gohir.D05G234100 Gossypium hirsutum HOM05D007182 ORTHO05D008919 1.3e-17 94.0 192 35.9
Sed0021526 Sechium edule HOM05D007182 ORTHO05D008919 2.3e-17 93.2 227 31.3
TWI12G0744 Tripterygium wilfordii HOM05D007182 ORTHO05D008919 2.3e-17 93.2 206 32.0
Glyma.04G253900 Glycine max HOM05D007182 ORTHO05D008919 5.0e-17 92.0 213 32.4
VMungo1309G0514 Vigna mungo HOM05D007182 ORTHO05D008919 5.0e-17 92.0 131 42.0
Rhsim06G0109300 Rhododendron simsii HOM05D007182 ORTHO05D008919 6.6e-17 91.7 188 35.1
Gohir.A05G231800 Gossypium hirsutum HOM05D007182 ORTHO05D008919 1.9e-16 90.1 146 36.3
Lalb_Chr10g0102011 Lupinus albus HOM05D007182 ORTHO05D008919 3.3e-16 89.4 207 33.8
TWI56G1442 Tripterygium wilfordii HOM05D007182 ORTHO05D008919 3.3e-16 89.4 200 32.5
A05p23400 Brassica napus HOM05D007182 ORTHO05D008919 5.6e-16 88.6 168 35.1
BraA05t21203Z Brassica rapa HOM05D007182 ORTHO05D008919 5.6e-16 88.6 168 35.1
CsaV3_5G023550 Cucumis sativus L. HOM05D007182 ORTHO05D008919 5.6e-16 88.6 201 34.8
Migut.N03323 Erythranthe guttata HOM05D007182 ORTHO05D008919 7.3e-16 88.2 175 37.7
MBI06_g01043_MAGBIO Magnolia biondii HOM05D007182 ORTHO05D008919 9.5e-16 87.8 172 37.8
PGR042G1174 Punica granatum HOM05D007182 ORTHO05D008919 9.5e-16 87.8 213 34.7
FAN04G2762 Fragaria x ananassa HOM05D007182 ORTHO05D008919 1.2e-15 87.4 181 37.0
FAN04G3126 Fragaria x ananassa HOM05D007182 ORTHO05D008919 1.2e-15 87.4 181 34.3
Carub.0001s3387 Capsella rubella HOM05D007182 ORTHO05D008919 1.6e-15 87.0 180 35.0
FvH4_5g38830 Fragaria vesca HOM05D007182 ORTHO05D008919 2.8e-15 86.3 182 35.7
Prupe.1G506300 Prunus persica HOM05D007182 ORTHO05D008919 3.6e-15 85.9 221 33.0
CARHR034810 Cardamine hirsuta HOM05D007182 ORTHO05D008919 4.7e-15 85.5 178 34.3
FAN13G2785 Fragaria x ananassa HOM05D007182 ORTHO05D008919 4.7e-15 85.5 191 35.1
Sc23g0000930 Simmondsia chinensis HOM05D007182 ORTHO05D008919 4.7e-15 85.5 220 32.3
THA.LOC104806807 Tarenaya hassleriana HOM05D007182 ORTHO05D008919 6.1e-15 85.1 190 32.6
FAN08G1433 Fragaria x ananassa HOM05D007182 ORTHO05D008919 1.0e-14 84.3 182 34.6
FAN18G1758 Fragaria x ananassa HOM05D007182 ORTHO05D008919 1.0e-14 84.3 182 35.2
Cc00_g10670 Coffea canephora HOM05D007182 ORTHO05D008919 1.4e-14 84.0 189 34.4
Aa31LG6G9060 Aethionema arabicum HOM05D007182 ORTHO05D008919 2.3e-14 83.2 175 33.1
Lalb_Chr08g0241731 Lupinus albus HOM05D007182 ORTHO05D008919 2.3e-14 83.2 206 31.6
Peaxi162Scf00476g00051 Petunia axillaris HOM05D007182 ORTHO05D008919 8.9e-14 81.3 184 33.7
Nitab4.5_0009801g0010 Nicotiana tabacum HOM05D007182 ORTHO05D008919 4.4e-13 79.0 166 36.7
BcaB03g13641 Brassica carinata HOM05D007182 ORTHO05D008919 5.8e-13 78.6 133 39.1
EL10Ac1g00042 Beta vulgaris HOM05D007182 ORTHO05D008919 2.9e-12 76.3 235 30.6
Oeu017862.1 Olea europaea HOM05D007182 ORTHO05D008919 2.9e-12 76.3 129 36.4
SGA_v2.0_scaffold28G12033 Striga asiatica HOM05D007182 ORTHO05D008919 3.7e-12 75.9 142 38.7
THA.LOC104813133 Tarenaya hassleriana HOM05D007182 ORTHO05D008919 3.7e-12 75.9 177 30.5
Ah.05g172700 Amaranthus hybridus HOM05D007182 ORTHO05D008919 8.3e-12 74.7 234 25.6
Sp1g31070 Schrenkiella parvula HOM05D007182 ORTHO05D008919 1.1e-11 74.3 142 33.1
Dinv27387 Davidia involucrata HOM05D007182 ORTHO05D008919 3.2e-11 72.8 232 29.7
Lj1g0021904 Lotus japonicus HOM05D007182 ORTHO05D008919 1.6e-10 70.5 262 26.7
Nitab4.5_0000051g0140 Nicotiana tabacum HOM05D007182 ORTHO05D008919 1.7e-09 67.0 127 38.6
DCAR_023125 Daucus carota HOM05D007182 ORTHO05D008919 2.3e-09 66.6 145 33.8
SGA_v2.0_scaffold118G32440 Striga asiatica HOM05D007182 ORTHO05D008919 2.3e-09 66.6 133 33.8
MBI03_g11135_MAGBIO Magnolia biondii HOM05D007182 ORTHO05D008919 2.5e-08 63.2 127 37.0
DCAR_014791 Daucus carota HOM05D007182 ORTHO05D008919 3.3e-08 62.8 144 32.6
AUR62004689 Chenopodium quinoa HOM05D007182 ORTHO05D008919 7.3e-08 61.6 140 36.4
MSTRG.1489 Avicennia marina HOM05D007182 ORTHO05D008919 2.8e-07 59.7 160 30.6
DCAR_014280 Daucus carota HOM05D007182 ORTHO05D008919 2.8e-07 59.7 130 32.3
PSO170G6318 Papaver somniferum HOM05D047867 ORTHO05D050185 2.8e-07 59.7 169 29.6
PSO017G5932 Papaver somniferum HOM05D047867 ORTHO05D050185 3.1e-06 56.2 177 31.6
ATR0171G007 Amborella trichopoda HOM05D007182 ORTHO05D008919 4.0e-06 55.8 129 33.3


User provided reference genes

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