Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 1.3e-51 206.1 101 100.0
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 5.1e-24 114.4 94 62.8
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 1.0e-19 100.1 96 53.1
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 1.3e-19 99.8 96 53.1
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 1.7e-19 99.4 94 55.3
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 3.2e-18 95.1 91 56.0
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 5.5e-18 94.4 91 54.9
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 1.2e-17 93.2 95 53.7
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.6e-17 92.8 91 57.1
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 2.1e-17 92.4 98 52.0
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.7e-17 92.0 92 57.6
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.7e-17 92.0 92 57.6
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 3.6e-17 91.7 98 53.1
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 3.6e-17 91.7 98 53.1
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 3.6e-17 91.7 98 51.0
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 3.6e-17 91.7 98 51.0
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 4.7e-17 91.3 95 54.7
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 6.1e-17 90.9 98 51.0
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 7.9e-17 90.5 90 53.3
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 1.0e-16 90.1 92 52.2
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 1.4e-16 89.7 94 54.3
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 1.8e-16 89.4 91 53.8
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 3.0e-16 88.6 95 50.5
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 3.0e-16 88.6 97 51.5
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 5.1e-16 87.8 92 55.4
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 6.7e-16 87.4 93 51.6
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 6.7e-16 87.4 107 49.5
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 6.7e-16 87.4 92 51.1
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 8.8e-16 87.0 93 51.6
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.1e-15 86.7 90 51.1
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 1.1e-15 86.7 108 48.1
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 1.1e-15 86.7 93 51.6
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.5e-15 86.3 90 51.1
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 1.5e-15 86.3 90 51.1
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 1.5e-15 86.3 93 51.6
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 2.0e-15 85.9 98 51.0
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 2.0e-15 85.9 90 50.0
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 2.0e-15 85.9 90 51.1
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 2.0e-15 85.9 90 51.1
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 2.6e-15 85.5 88 52.3
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 3.3e-15 85.1 96 53.1
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 3.3e-15 85.1 91 51.6
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 3.3e-15 85.1 97 48.5
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 4.4e-15 84.7 95 50.5
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 5.7e-15 84.3 90 47.8
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 5.7e-15 84.3 90 47.8
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 5.7e-15 84.3 90 50.0
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 7.4e-15 84.0 96 50.0
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 9.7e-15 83.6 99 48.5
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 9.7e-15 83.6 99 48.5
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 9.7e-15 83.6 90 51.1
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 9.7e-15 83.6 93 51.6
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 1.3e-14 83.2 92 50.0
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 1.3e-14 83.2 92 50.0
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 1.3e-14 83.2 99 48.5
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 1.7e-14 82.8 99 48.5
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 2.2e-14 82.4 90 46.7
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 2.8e-14 82.0 92 48.9
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.8e-14 82.0 102 47.1
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.8e-14 82.0 102 47.1
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 2.8e-14 82.0 102 47.1
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 3.7e-14 81.6 95 49.5
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 3.7e-14 81.6 94 48.9
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 4.8e-14 81.3 101 46.5
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 6.3e-14 80.9 90 46.7
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 6.3e-14 80.9 90 46.7
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 6.3e-14 80.9 97 50.5
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 6.3e-14 80.9 93 45.2
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 8.2e-14 80.5 97 46.4
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 8.2e-14 80.5 91 49.5
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 8.2e-14 80.5 102 47.1
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 8.2e-14 80.5 96 47.9
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 1.1e-13 80.1 100 46.0
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 1.1e-13 80.1 100 46.0
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 1.4e-13 79.7 93 45.2
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 1.4e-13 79.7 93 45.2
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 1.4e-13 79.7 93 45.2
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 1.4e-13 79.7 92 46.7
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 1.4e-13 79.7 93 50.5
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 1.8e-13 79.3 93 44.1
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 1.8e-13 79.3 101 44.6
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 1.8e-13 79.3 95 49.5
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.1e-13 78.6 90 46.7
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 3.1e-13 78.6 94 47.9
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 5.3e-13 77.8 93 50.5
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 9.1e-13 77.0 100 49.0
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 1.2e-12 76.6 95 47.4
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 1.6e-12 76.3 94 46.8
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 2.0e-12 75.9 99 46.5
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 3.5e-12 75.1 98 49.0
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 4.5e-12 74.7 98 44.9
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 4.5e-12 74.7 99 45.5
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 5.9e-12 74.3 92 50.0
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 5.9e-12 74.3 92 43.5
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 5.9e-12 74.3 82 51.2
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 5.9e-12 74.3 95 49.5
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 1.0e-11 73.6 92 43.5
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 1.3e-11 73.2 93 50.5
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 1.3e-11 73.2 97 48.5
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 2.2e-11 72.4 98 49.0
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 3.8e-11 71.6 93 47.3
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 3.8e-11 71.6 101 43.6
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 3.8e-11 71.6 89 46.1
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 5.0e-11 71.2 74 54.1
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 6.5e-11 70.9 101 42.6
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 1.9e-10 69.3 62 58.1
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 3.2e-10 68.6 87 49.4
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 4.2e-10 68.2 113 38.1
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 5.5e-10 67.8 102 43.1
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 7.2e-10 67.4 100 43.0
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 9.4e-10 67.0 95 46.3
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.6e-09 66.2 66 53.0
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 8.0e-09 63.9 85 43.5
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 8.0e-09 63.9 60 55.0
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 1.8e-08 62.8 90 42.2
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 2.3e-08 62.4 97 42.3
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 5.2e-08 61.2 56 50.0
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 1.5e-07 59.7 95 38.9
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 9.7e-07 57.0 49 53.1
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 9.7e-07 57.0 69 39.1


User provided reference genes

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