Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08517 Nelumbo nucifera HOM05D004599 ORTHO05D005564 4.5e-17 90.1 44 100.0
Nn1g03051 Nelumbo nucifera HOM05D004599 ORTHO05D005564 8.8e-13 75.9 38 97.4
CAN.G812.39 Capsicum annuum HOM05D004599 ORTHO05D005564 2.8e-11 70.9 41 80.5
SGA_v2.0_scaffold155G37242 Striga asiatica HOM05D004599 ORTHO05D005564 4.8e-11 70.1 39 84.6
Lsat_1_v5_gn_6_67861 Lactuca sativa HOM05D004599 ORTHO05D005564 8.3e-11 69.3 43 76.7
HanXRQChr07g0185811 Helianthus annuus HOM05D004599 ORTHO05D005564 1.1e-10 68.9 40 80.0
CANSAT78G2223 Cannabis sativa HOM05D004599 ORTHO05D005564 1.4e-10 68.6 40 80.0
Cc03_g06960 Coffea canephora HOM05D004599 ORTHO05D005564 1.4e-10 68.6 38 84.2
Peaxi162Scf00125g01025 Petunia axillaris HOM05D004599 ORTHO05D005564 1.4e-10 68.6 39 79.5
TWI09G0954 Tripterygium wilfordii HOM05D004599 ORTHO05D005564 1.4e-10 68.6 42 76.2
DCAR_024304 Daucus carota HOM05D004599 ORTHO05D005564 1.8e-10 68.2 38 84.2
Dinv27138 Davidia involucrata HOM05D004599 ORTHO05D005564 1.8e-10 68.2 39 82.1
TAR365G0001 Trochodendron aralioides HOM05D004599 ORTHO05D005564 1.8e-10 68.2 38 84.2
Medtr1g045930 Medicago truncatula HOM05D004599 ORTHO05D005564 2.4e-10 67.8 38 84.2
Solyc09g091050.4 Solanum lycopersicum HOM05D004599 ORTHO05D005564 2.4e-10 67.8 39 79.5
Sopen09g034030 Solanum pennellii HOM05D004599 ORTHO05D005564 2.4e-10 67.8 39 79.5
Aqoxy5G00088 Aquilegia oxysepala HOM05D004599 ORTHO05D005564 3.1e-10 67.4 38 81.6
TPR.G23991 Trifolium pratense HOM05D004599 ORTHO05D005564 3.1e-10 67.4 38 81.6
BolC4t25820H Brassica oleracea HOM05D004599 ORTHO05D005564 4.1e-10 67.0 40 77.5
Ca_26211_v3 Cicer arietinum L. HOM05D004599 ORTHO05D005564 4.1e-10 67.0 38 81.6
Glyma.10G130800 Glycine max HOM05D004599 ORTHO05D005564 7.0e-10 66.2 38 81.6
Glyma.20G081500 Glycine max HOM05D004599 ORTHO05D005564 7.0e-10 66.2 38 81.6
CiPaw.01G175100 Carya illinoinensis HOM05D004599 ORTHO05D005564 9.1e-10 65.9 38 84.2
Migut.O00257 Erythranthe guttata HOM05D004599 ORTHO05D005564 9.1e-10 65.9 39 79.5
vmacro00526 Vaccinium macrocarpon HOM05D004599 ORTHO05D005564 1.2e-09 65.5 38 81.6
Aa31LG9G4110 Aethionema arabicum HOM05D004599 ORTHO05D005564 1.6e-09 65.1 38 78.9
AL7G43140 Arabidopsis lyrata HOM05D004599 ORTHO05D005564 1.6e-09 65.1 38 81.6
ECA233G3541 Erigeron canadensis HOM05D004599 ORTHO05D005564 1.6e-09 65.1 38 78.9
GSVIVG01001867001 Vitis vinifera HOM05D004599 ORTHO05D005564 1.6e-09 65.1 38 81.6
Cfa014829 Carpinus fangiana HOM05D004599 ORTHO05D005564 2.0e-09 64.7 38 81.6
Phvul.007G232800 Phaseolus vulgaris HOM05D004599 ORTHO05D005564 2.0e-09 64.7 38 78.9
Psat0s3917g0040 Pisum sativum HOM05D004599 ORTHO05D005564 2.0e-09 64.7 38 78.9
ATR0088G024 Amborella trichopoda HOM05D004599 ORTHO05D005564 2.7e-09 64.3 38 76.3
AT4G13550 Arabidopsis thaliana HOM05D004599 ORTHO05D005564 2.7e-09 64.3 38 81.6
MD13G1226600 Malus domestica HOM05D004599 ORTHO05D005564 2.7e-09 64.3 38 76.3
Oeu008817.2 Olea europaea HOM05D004599 ORTHO05D005564 2.7e-09 64.3 39 82.1
RcHm_v2.0_Chr4g0396161 Rosa chinensis HOM05D004599 ORTHO05D005564 2.7e-09 64.3 38 78.9
Zm00001eb426320 Zea mays HOM05D004599 ORTHO05D005564 2.7e-09 64.3 38 73.7
Actinidia35930 Actinidia chinensis HOM05D004599 ORTHO05D005564 3.5e-09 63.9 41 75.6
Ciclev10004289m.g Citrus clementina HOM05D004599 ORTHO05D005564 3.5e-09 63.9 39 74.4
Prupe.1G054000 Prunus persica HOM05D004599 ORTHO05D005564 3.5e-09 63.9 38 78.9
Sed0004443 Sechium edule HOM05D004599 ORTHO05D005564 3.5e-09 63.9 38 78.9
Manes.03G155700 Manihot esculenta HOM05D004599 ORTHO05D005564 4.5e-09 63.5 38 78.9
Nitab4.5_0000451g0060 Nicotiana tabacum HOM05D004599 ORTHO05D005564 4.5e-09 63.5 39 76.9
Nitab4.5_0000867g0040 Nicotiana tabacum HOM05D004599 ORTHO05D005564 4.5e-09 63.5 39 76.9
Rhsim09G0044400 Rhododendron simsii HOM05D004599 ORTHO05D005564 4.5e-09 63.5 38 78.9
Actinidia25093 Actinidia chinensis HOM05D004599 ORTHO05D005564 5.9e-09 63.2 38 78.9
arahy.Tifrunner.gnm1.ann1.7X6UW5 Arachis hypogaea HOM05D004599 ORTHO05D005564 5.9e-09 63.2 38 76.3
CSS0038132 Camellia sinensis var. sinensis HOM05D004599 ORTHO05D005564 5.9e-09 63.2 38 78.9
MELO3C022936.2 Cucumis melo HOM05D004599 ORTHO05D005564 5.9e-09 63.2 38 78.9
CsaV3_5G015660 Cucumis sativus L. HOM05D004599 ORTHO05D005564 5.9e-09 63.2 38 78.9
MBI07_g14440_MAGBIO Magnolia biondii HOM05D004599 ORTHO05D005564 5.9e-09 63.2 38 76.3
Sc19g0005730 Simmondsia chinensis HOM05D004599 ORTHO05D005564 5.9e-09 63.2 38 78.9
VMungo0720G2025 Vigna mungo HOM05D004599 ORTHO05D005564 5.9e-09 63.2 38 76.3
BcaB03g16085 Brassica carinata HOM05D004599 ORTHO05D005564 7.7e-09 62.8 38 76.3
AUR62035344 Chenopodium quinoa HOM05D004599 ORTHO05D005564 7.7e-09 62.8 38 76.3
ClCG11G000260 Citrullus lanatus HOM05D004599 ORTHO05D005564 7.7e-09 62.8 38 78.9
FvH4_4g05250 Fragaria vesca HOM05D004599 ORTHO05D005564 7.7e-09 62.8 38 76.3
FAN07G1323 Fragaria x ananassa HOM05D004599 ORTHO05D005564 7.7e-09 62.8 38 76.3
FAN12G1799 Fragaria x ananassa HOM05D004599 ORTHO05D005564 7.7e-09 62.8 38 76.3
FAN17G0126 Fragaria x ananassa HOM05D004599 ORTHO05D005564 7.7e-09 62.8 38 76.3
FAN22G0163 Fragaria x ananassa HOM05D004599 ORTHO05D005564 7.7e-09 62.8 38 76.3
Lj6g0015914 Lotus japonicus HOM05D004599 ORTHO05D005564 7.7e-09 62.8 38 78.9
BcaC02g09417 Brassica carinata HOM05D004599 ORTHO05D005564 1.0e-08 62.4 38 76.3
A04p08630 Brassica napus HOM05D004599 ORTHO05D005564 1.0e-08 62.4 38 76.3
C04p42390 Brassica napus HOM05D004599 ORTHO05D005564 1.0e-08 62.4 38 76.3
BraA04t16557Z Brassica rapa HOM05D004599 ORTHO05D005564 1.0e-08 62.4 38 76.3
AUR62035896 Chenopodium quinoa HOM05D004599 ORTHO05D005564 1.0e-08 62.4 38 76.3
Thhalv10024569m.g Eutrema salsugineum HOM05D004599 ORTHO05D005564 1.0e-08 62.4 38 76.3
Os04g0509100 Oryza sativa ssp. japonica HOM05D004599 ORTHO05D005564 1.0e-08 62.4 38 73.7
Sp7g11150 Schrenkiella parvula HOM05D004599 ORTHO05D005564 1.0e-08 62.4 38 76.3
EL10Ac3g06729 Beta vulgaris HOM05D004599 ORTHO05D005564 1.3e-08 62.0 38 73.7
CARHR219180 Cardamine hirsuta HOM05D004599 ORTHO05D005564 1.3e-08 62.0 38 78.9
PSO832G1760 Papaver somniferum HOM05D004599 ORTHO05D005564 1.3e-08 62.0 38 78.9
Lalb_Chr03g0036871 Lupinus albus HOM05D004599 ORTHO05D005564 1.7e-08 61.6 38 76.3
Eucgr.H03725 Eucalyptus grandis HOM05D004599 ORTHO05D005564 2.2e-08 61.2 38 78.9
Hma1.2p1_1076F.1_g254550 Hydrangea macrophylla HOM05D004599 ORTHO05D005564 2.2e-08 61.2 38 76.3
Hma1.2p1_1076F.1_g254560 Hydrangea macrophylla HOM05D004599 ORTHO05D005564 2.2e-08 61.2 38 76.3
Potri.010G062700 Populus trichocarpa HOM05D004599 ORTHO05D005564 2.2e-08 61.2 38 76.3
Sabra10G0044000 Salix brachista HOM05D004599 ORTHO05D005564 2.2e-08 61.2 38 76.3
CDE05G1922 Ceratophyllum demersum HOM05D004599 ORTHO05D005564 2.9e-08 60.8 34 79.4
Hund19266 Selenicereus undatus HOM05D004599 ORTHO05D005564 2.9e-08 60.8 38 78.9
SalBow2G1411 Salvia bowleyana HOM05D004599 ORTHO05D005564 5.0e-08 60.1 39 71.8
Carub.0007s2899 Capsella rubella HOM05D004599 ORTHO05D005564 8.5e-08 59.3 38 73.7
COL.COLO4_07140 Corchorus olitorius HOM05D004599 ORTHO05D005564 8.5e-08 59.3 38 73.7
Duzib212G0332 Durio zibethinus HOM05D004599 ORTHO05D005564 8.5e-08 59.3 38 73.7
Thecc.04G218800 Theobroma cacao HOM05D004599 ORTHO05D005564 1.1e-07 58.9 38 71.1
Duzib151G0579 Durio zibethinus HOM05D004599 ORTHO05D005564 1.9e-07 58.2 38 73.7
unitig_32.g10859 Utricularia gibba HOM05D004599 ORTHO05D005564 1.9e-07 58.2 30 90.0
Cpa.g.sc59.43 Carica papaya HOM05D004599 ORTHO05D005564 3.2e-07 57.4 37 70.3
Ah.13g074990 Amaranthus hybridus HOM05D004599 ORTHO05D005564 4.2e-07 57.0 38 73.7
Gohir.A02G025500 Gossypium hirsutum HOM05D004599 ORTHO05D005564 1.2e-06 55.5 38 71.1
Gorai.005G036200 Gossypium raimondii HOM05D004599 ORTHO05D005564 1.2e-06 55.5 38 71.1
HPP92_012645 Vanilla planifolia HOM05D004599 ORTHO05D005564 1.6e-06 55.1 42 59.5
Mapoly0081s0062 Marchantia polymorpha HOM05D004599 ORTHO05D005564 2.7e-06 54.3 42 69.0
Pp3c16_6180 Physcomitrium patens HOM05D004599 ORTHO05D005564 3.6e-06 53.9 39 66.7
Psat0s2340g0040 Pisum sativum HOM05D004599 ORTHO05D005564 8.0e-06 52.8 30 80.0


User provided reference genes

Program Settings