Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 6.2e-59 230.7 127 100.0
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 1.1e-26 123.6 89 76.4
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 7.6e-25 117.5 90 72.2
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 2.9e-24 115.5 88 70.5
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 2.9e-24 115.5 95 69.5
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 3.8e-24 115.2 88 70.5
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 4.9e-24 114.8 88 70.5
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 6.5e-24 114.4 88 71.6
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 6.5e-24 114.4 88 71.6
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 8.4e-24 114.0 88 70.5
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 1.4e-23 113.2 88 70.5
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 1.9e-23 112.8 88 69.3
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 1.9e-23 112.8 88 69.3
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 1.9e-23 112.8 88 69.3
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 3.2e-23 112.1 92 66.3
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 4.2e-23 111.7 88 68.2
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 4.2e-23 111.7 88 68.2
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 4.2e-23 111.7 88 68.2
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 4.2e-23 111.7 88 68.2
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 4.2e-23 111.7 88 68.2
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 5.5e-23 111.3 86 68.6
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 5.5e-23 111.3 88 68.2
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 7.1e-23 110.9 89 68.5
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 7.1e-23 110.9 89 67.4
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 1.2e-22 110.2 88 67.0
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 1.2e-22 110.2 88 67.0
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 1.6e-22 109.8 88 68.2
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 1.6e-22 109.8 87 69.0
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 2.1e-22 109.4 88 67.0
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 3.5e-22 108.6 87 66.7
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 6.0e-22 107.8 88 64.8
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 6.0e-22 107.8 88 67.0
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 1.0e-21 107.1 88 65.9
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 1.3e-21 106.7 90 63.3
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 1.3e-21 106.7 90 63.3
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 1.3e-21 106.7 88 63.6
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 1.3e-21 106.7 89 65.2
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 1.8e-21 106.3 92 64.1
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 1.8e-21 106.3 88 65.9
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 2.3e-21 105.9 89 65.2
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.3e-21 105.9 88 65.9
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.3e-21 105.9 88 65.9
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 2.3e-21 105.9 87 65.5
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 2.3e-21 105.9 87 69.0
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 2.3e-21 105.9 88 65.9
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 3.0e-21 105.5 88 62.5
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 3.0e-21 105.5 88 64.8
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 3.0e-21 105.5 87 69.0
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 3.0e-21 105.5 88 65.9
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 3.0e-21 105.5 89 65.2
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 3.9e-21 105.1 88 64.8
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 5.1e-21 104.8 88 64.8
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 5.1e-21 104.8 87 65.5
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 5.1e-21 104.8 88 64.8
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 5.1e-21 104.8 88 64.8
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 5.1e-21 104.8 88 65.9
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 5.1e-21 104.8 88 64.8
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 5.1e-21 104.8 88 64.8
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 6.7e-21 104.4 95 65.3
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 6.7e-21 104.4 87 64.4
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 8.7e-21 104.0 89 66.3
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 1.1e-20 103.6 88 63.6
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 1.5e-20 103.2 90 68.9
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 1.5e-20 103.2 87 67.8
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 1.5e-20 103.2 87 65.5
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 1.5e-20 103.2 87 65.5
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 1.9e-20 102.8 87 64.4
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 1.9e-20 102.8 88 61.4
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 1.9e-20 102.8 90 67.8
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 2.5e-20 102.4 88 63.6
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 2.5e-20 102.4 89 62.9
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 3.3e-20 102.1 88 63.6
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 3.3e-20 102.1 93 62.4
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 3.3e-20 102.1 88 62.5
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 3.3e-20 102.1 87 64.4
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 5.7e-20 101.3 87 63.2
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 7.4e-20 100.9 93 59.1
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 7.4e-20 100.9 86 62.8
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 7.4e-20 100.9 88 63.6
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 7.4e-20 100.9 89 64.0
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 1.3e-19 100.1 87 64.4
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 2.2e-19 99.4 88 61.4
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 2.8e-19 99.0 88 62.5
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 3.7e-19 98.6 89 61.8
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 4.8e-19 98.2 88 59.1
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 6.3e-19 97.8 87 65.5
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 1.1e-18 97.1 89 61.8
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 1.8e-18 96.3 88 60.2
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 3.1e-18 95.5 87 62.1
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 4.1e-18 95.1 88 62.5
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 5.3e-18 94.7 88 61.4
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 6.9e-18 94.4 88 60.2
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 1.7e-16 89.7 87 57.5
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 2.5e-15 85.9 87 55.2
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 1.6e-14 83.2 90 52.2
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 1.6e-14 83.2 74 58.1
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 4.6e-14 81.6 80 60.0
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 9.7e-12 73.9 66 63.6
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 6.3e-11 71.2 66 62.1
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 3.1e-10 68.9 62 56.5
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 6.5e-08 61.2 80 48.8


User provided reference genes

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