Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 3.6e-188 661.4 325 100.0
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 8.0e-103 377.9 249 76.3
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 1.5e-101 373.6 252 74.6
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 3.4e-101 372.5 249 75.1
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 5.9e-98 361.7 258 70.9
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 7.3e-96 354.8 246 74.0
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 1.8e-94 350.1 255 71.8
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.3e-94 349.7 258 69.4
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 3.1e-94 349.4 253 70.4
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.5e-93 347.1 252 70.6
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 4.4e-93 345.5 251 71.7
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 4.4e-93 345.5 253 70.0
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 4.4e-93 345.5 247 68.8
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 1.7e-92 343.6 260 68.1
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 6.4e-92 341.7 245 70.6
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 8.3e-92 341.3 257 69.3
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.1e-91 340.9 247 70.9
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 1.4e-91 340.5 257 68.9
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 3.2e-91 339.3 249 68.7
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 7.0e-91 338.2 256 70.7
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 7.0e-91 338.2 256 70.7
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.6e-90 337.0 240 70.0
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.7e-90 336.3 237 71.3
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 2.7e-90 336.3 237 71.3
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 3.5e-90 335.9 255 67.8
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 3.5e-90 335.9 254 68.9
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 3.5e-90 335.9 248 69.0
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 1.7e-89 333.6 252 68.3
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 1.7e-89 333.6 268 63.1
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 2.3e-89 333.2 257 68.5
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 3.9e-89 332.4 248 69.4
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 5.0e-89 332.0 249 67.5
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.1e-88 330.9 241 68.5
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.1e-88 330.9 244 67.6
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.5e-88 330.5 257 68.1
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 1.5e-88 330.5 244 67.6
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.5e-88 330.5 262 64.5
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 1.9e-88 330.1 258 68.2
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 7.3e-88 328.2 261 64.4
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 9.5e-88 327.8 249 64.7
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 9.5e-88 327.8 252 67.1
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.2e-87 327.4 254 67.3
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 1.2e-87 327.4 240 68.3
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 1.2e-87 327.4 240 68.3
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 1.2e-87 327.4 240 68.3
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.2e-87 327.4 250 66.0
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 1.6e-87 327.0 240 70.0
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 2.1e-87 326.6 198 78.3
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 2.1e-87 326.6 256 62.9
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 2.8e-87 326.2 236 70.8
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 4.7e-87 325.5 252 66.3
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 1.1e-86 324.3 251 67.7
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.4e-86 323.9 244 66.4
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 2.3e-86 323.2 264 65.2
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 3.1e-86 322.8 268 63.8
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 6.8e-86 321.6 236 69.5
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 6.8e-86 321.6 236 69.5
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 8.9e-86 321.2 251 64.5
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 8.9e-86 321.2 272 64.0
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 8.9e-86 321.2 196 79.1
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 1.2e-85 320.9 191 80.6
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 1.5e-85 320.5 235 69.8
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 1.5e-85 320.5 236 69.1
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 2.6e-85 319.7 249 62.7
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 2.6e-85 319.7 255 64.7
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 3.4e-85 319.3 235 69.4
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 3.4e-85 319.3 235 69.4
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 3.4e-85 319.3 212 75.0
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 4.4e-85 318.9 255 65.5
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 5.8e-85 318.5 248 66.5
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 5.8e-85 318.5 251 65.7
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 9.8e-85 317.8 258 64.7
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 2.2e-84 316.6 239 67.8
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 2.2e-84 316.6 226 70.4
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 2.9e-84 316.2 189 79.9
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.9e-84 316.2 271 60.9
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 2.9e-84 316.2 247 66.0
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 3.7e-84 315.8 240 67.1
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 4.9e-84 315.5 243 68.7
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 6.4e-84 315.1 247 65.6
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 8.3e-84 314.7 212 74.1
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 8.3e-84 314.7 248 66.5
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 8.3e-84 314.7 189 78.8
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.1e-83 314.3 251 64.1
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.4e-83 313.9 251 64.9
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.4e-83 313.9 260 63.8
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 1.9e-83 313.5 239 67.4
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 1.9e-83 313.5 195 76.4
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 1.9e-83 313.5 199 75.9
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 2.4e-83 313.2 288 60.1
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 4.1e-83 312.4 251 65.3
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 5.4e-83 312.0 242 66.1
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 9.2e-83 311.2 283 60.1
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.2e-82 310.8 201 76.1
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 3.5e-82 309.3 192 77.1
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 3.5e-82 309.3 205 72.7
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 3.5e-82 309.3 261 62.8
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.6e-82 308.9 244 65.6
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 4.6e-82 308.9 277 59.9
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-81 306.2 244 66.4
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 8.6e-81 304.7 189 76.7
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 1.9e-80 303.5 224 69.2
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 3.3e-80 302.8 248 63.3
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 4.3e-80 302.4 203 72.4
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 5.6e-80 302.0 231 66.7
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 5.6e-80 302.0 244 64.8
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 7.3e-80 301.6 254 61.4
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 9.5e-80 301.2 198 77.8
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 2.1e-79 300.1 228 67.5
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 2.8e-79 299.7 235 66.4
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 2.8e-79 299.7 180 77.8
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 8.1e-79 298.1 254 62.6
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.1e-78 297.7 241 63.5
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 8.9e-78 294.7 201 67.7
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 2.0e-77 293.5 212 68.9
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 1.3e-76 290.8 179 76.0
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 1.3e-76 290.8 230 63.9
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.7e-76 290.4 182 76.4
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.9e-75 287.0 189 73.5
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.4e-75 286.6 237 63.7
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.9e-72 276.9 199 67.8
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 7.3e-72 275.0 196 65.8
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.6e-71 273.9 145 89.0
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 6.9e-70 268.5 267 58.8
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.2e-69 267.7 180 70.0
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 1.6e-66 257.3 205 63.9
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 4.6e-66 255.8 179 65.9
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 6.6e-65 251.9 143 83.2
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.9e-64 250.4 183 63.9
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 3.6e-63 246.1 141 82.3
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 7.6e-61 238.4 132 85.6
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 7.1e-59 231.9 190 57.9
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.0e-57 228.0 254 51.2
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 7.4e-56 221.9 126 82.5
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 4.9e-52 209.1 110 89.1
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.1e-51 208.0 169 58.6
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 1.0e-49 201.4 168 58.3
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.9e-49 199.5 226 50.4
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.2e-47 192.2 191 56.5
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 3.1e-46 189.9 177 59.3
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 8.4e-44 181.8 191 55.5
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 8.4e-44 181.8 191 55.5
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 4.8e-39 166.0 228 44.7
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 9.7e-32 141.7 146 52.7
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 1.7e-28 131.0 132 53.0
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 6.1e-26 122.5 123 52.0
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 4.1e-22 109.8 88 67.0
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-20 105.1 70 70.0
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.7e-10 69.7 42 76.2
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.7e-10 69.7 42 76.2
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.2e-08 65.1 125 40.8


User provided reference genes

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