Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.2e-88 329.7 158 100.0
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 5.5e-81 304.3 157 89.8
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 2.1e-80 302.4 157 89.2
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 2.1e-80 302.4 157 91.1
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 1.1e-78 296.6 158 89.2
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 4.3e-78 294.7 158 87.3
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 9.7e-78 293.5 157 84.7
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.3e-77 293.1 157 86.6
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.3e-77 293.1 157 84.7
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.6e-77 292.7 157 85.4
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 1.6e-77 292.7 157 85.4
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 2.2e-77 292.4 157 86.0
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 3.7e-77 291.6 157 85.4
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 3.7e-77 291.6 157 85.4
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 3.7e-77 291.6 158 86.7
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 6.3e-77 290.8 157 86.6
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 6.3e-77 290.8 157 86.6
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 6.3e-77 290.8 157 86.6
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 8.2e-77 290.4 157 86.0
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 1.1e-76 290.0 157 84.1
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 1.4e-76 289.7 157 86.6
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.4e-76 289.7 157 86.0
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 3.1e-76 288.5 157 86.0
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 3.1e-76 288.5 157 84.1
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 4.1e-76 288.1 158 84.2
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 4.1e-76 288.1 157 87.3
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 5.3e-76 287.7 158 84.8
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 6.9e-76 287.3 157 86.0
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 6.9e-76 287.3 157 86.0
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 6.9e-76 287.3 157 84.7
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 9.0e-76 287.0 158 85.4
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 9.0e-76 287.0 157 84.1
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 1.2e-75 286.6 157 82.2
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 1.5e-75 286.2 157 85.4
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 2.0e-75 285.8 157 83.4
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 2.0e-75 285.8 157 82.8
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 2.0e-75 285.8 157 84.7
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 3.4e-75 285.0 157 84.1
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 4.5e-75 284.6 157 82.8
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 5.9e-75 284.3 157 85.4
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-74 283.5 157 84.1
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.0e-74 283.5 157 83.4
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.0e-74 283.5 157 84.1
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.3e-74 283.1 157 84.7
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.3e-74 283.1 157 83.4
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.3e-74 283.1 157 85.4
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 1.7e-74 282.7 157 84.7
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.7e-74 282.7 157 83.4
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 2.2e-74 282.3 157 84.7
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 2.2e-74 282.3 194 71.1
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 2.2e-74 282.3 157 84.1
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.9e-74 282.0 157 83.4
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.9e-74 282.0 157 84.1
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 2.9e-74 282.0 157 84.1
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 3.8e-74 281.6 156 85.3
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 3.8e-74 281.6 155 82.6
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 3.8e-74 281.6 157 85.4
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 5.0e-74 281.2 157 84.1
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 8.5e-74 280.4 157 82.8
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.4e-73 279.6 157 85.4
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 1.9e-73 279.3 157 84.1
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.9e-73 279.3 158 81.6
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 1.9e-73 279.3 157 80.9
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.9e-73 279.3 157 80.9
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 1.9e-73 279.3 158 82.3
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 1.9e-73 279.3 157 83.4
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 5.5e-73 277.7 157 82.8
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 5.5e-73 277.7 157 81.5
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 7.2e-73 277.3 157 82.2
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 1.2e-72 276.6 157 82.2
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 2.7e-72 275.4 157 80.3
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 3.6e-72 275.0 158 84.8
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 4.6e-72 274.6 157 78.3
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 4.6e-72 274.6 157 80.3
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 6.1e-72 274.2 158 78.5
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 7.9e-72 273.9 157 80.9
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 3.0e-71 271.9 157 80.9
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 3.9e-71 271.6 157 80.3
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 3.9e-71 271.6 157 79.6
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 8.8e-71 270.4 157 77.7
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 1.1e-70 270.0 157 79.6
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 4.3e-70 268.1 147 84.4
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 7.4e-70 267.3 157 77.7
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 1.3e-69 266.5 157 79.6
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 2.8e-69 265.4 157 79.0
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 3.7e-69 265.0 157 79.0
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 3.7e-69 265.0 157 80.3
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 6.3e-69 264.2 157 79.0
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 8.2e-69 263.8 157 78.3
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 1.1e-68 263.5 181 70.7
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 2.4e-68 262.3 176 73.3
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 2.4e-68 262.3 180 70.6
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 3.1e-68 261.9 158 77.8
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 3.1e-68 261.9 158 77.8
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 3.1e-68 261.9 158 77.2
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 3.1e-68 261.9 158 76.6
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 4.1e-68 261.5 173 72.8
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 5.3e-68 261.2 157 77.7
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 9.1e-68 260.4 157 76.4
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 2.0e-67 259.2 161 77.0
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 2.6e-67 258.8 157 76.4
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 2.6e-67 258.8 161 76.4
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 2.2e-66 255.8 157 74.5
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 2.9e-66 255.4 158 75.3
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 5.0e-66 254.6 163 74.2
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 2.7e-64 248.8 123 91.9
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 2.7e-64 248.8 157 70.1
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 1.7e-61 239.6 154 69.5
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 2.2e-61 239.2 140 77.9
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 4.8e-61 238.0 159 70.4
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 8.2e-61 237.3 157 73.2
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 2.4e-60 235.7 139 77.7
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 2.4e-60 235.7 120 89.2
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 5.3e-60 234.6 157 68.2
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 7.0e-60 234.2 131 82.4
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.2e-59 233.4 155 70.3
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 2.6e-59 232.3 157 73.2
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 2.6e-59 232.3 164 72.6
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 2.6e-59 232.3 164 72.6
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 1.5e-57 226.5 164 70.7
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 5.5e-57 224.6 157 70.7
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 6.1e-56 221.1 123 79.7
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 6.7e-55 217.6 123 78.9
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.5e-54 216.5 157 67.5
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 3.3e-54 215.3 157 66.2
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 1.3e-53 213.4 120 80.8
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 1.3e-53 213.4 120 80.8
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 3.7e-53 211.8 157 61.1
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.4e-52 209.9 157 66.9
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.5e-49 199.1 153 58.2
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 3.4e-46 188.7 115 76.5
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 7.5e-46 187.6 130 71.5
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 2.2e-45 186.0 154 56.5
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 3.7e-45 185.3 133 62.4
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 3.1e-44 182.2 122 73.0
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 5.9e-43 177.9 123 67.5
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 6.8e-39 164.5 120 66.7
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 2.0e-38 162.9 87 87.4
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 2.8e-37 159.1 130 59.2
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 3.5e-35 152.1 86 82.6
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 1.0e-31 140.6 87 75.9
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.4e-28 129.4 87 77.0
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 7.0e-20 101.3 53 88.7
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 5.0e-18 95.1 53 75.5
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 5.0e-18 95.1 53 75.5
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.3e-17 92.4 65 69.2
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.3e-17 92.4 65 69.2
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 9.5e-17 90.9 95 52.6
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 4.1e-12 75.5 58 69.0
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 8.6e-10 67.8 75 40.0
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 1.4e-07 60.5 47 57.4
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 5.2e-07 58.5 38 73.7
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 8.9e-07 57.8 43 67.4
arahy.Tifrunner.gnm1.ann1.03U3FR Arachis hypogaea HOM05D036434 ORTHO05D085949 2.6e-06 56.2 54 53.7
arahy.Tifrunner.gnm1.ann1.E7EHDM Arachis hypogaea HOM05D036434 ORTHO05D085916 2.6e-06 56.2 54 53.7
SGA_v2.0_scaffold80G25734 Striga asiatica HOM05D040281 ORTHO05D035895 5.8e-06 55.1 43 65.1


User provided reference genes

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