Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.4e-164 581.3 297 100.0
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.8e-134 482.3 296 84.1
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.4e-100 369.0 194 93.3
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.7e-96 354.4 194 89.7
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 4.3e-87 325.5 194 82.5
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.4e-87 324.7 296 62.5
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.6e-84 316.2 163 93.3
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.4e-83 311.6 177 88.1
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.5e-81 305.8 169 91.1
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 2.3e-80 303.1 207 70.5
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 3.9e-80 302.4 194 75.3
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 6.7e-80 301.6 207 70.0
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 3.7e-78 295.8 194 71.1
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 4.8e-78 295.4 191 73.8
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 6.2e-78 295.0 191 73.8
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 1.4e-77 293.9 194 74.7
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.1e-77 292.7 194 76.8
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 4.0e-77 292.4 194 73.7
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 9.0e-77 291.2 194 70.1
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 9.0e-77 291.2 194 71.1
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 1.5e-76 290.4 218 66.1
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 2.6e-76 289.7 207 70.5
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 3.4e-76 289.3 194 72.7
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 5.8e-76 288.5 193 71.0
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 7.6e-76 288.1 191 71.7
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 7.6e-76 288.1 194 70.1
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 7.6e-76 288.1 207 70.0
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.0e-75 287.7 194 69.6
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 2.9e-75 286.2 194 70.6
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 3.8e-75 285.8 194 71.1
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 3.8e-75 285.8 195 71.3
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 8.4e-75 284.6 194 69.6
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 1.9e-74 283.5 191 71.2
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.9e-74 283.5 191 72.3
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 1.9e-74 283.5 194 70.6
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 4.2e-74 282.3 197 69.5
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 4.2e-74 282.3 191 70.7
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 5.5e-74 282.0 196 69.9
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 5.5e-74 282.0 191 70.7
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 1.2e-73 280.8 194 69.1
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.1e-73 280.0 194 69.1
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.5e-73 279.3 197 68.5
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 3.5e-73 279.3 195 69.2
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 4.6e-73 278.9 194 69.6
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 4.6e-73 278.9 194 69.6
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 6.0e-73 278.5 196 67.3
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 6.0e-73 278.5 191 72.3
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 1.0e-72 277.7 194 69.6
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 1.3e-72 277.3 194 68.6
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.8e-72 276.9 191 68.6
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 2.3e-72 276.6 190 67.9
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 3.0e-72 276.2 191 71.2
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 6.7e-72 275.0 194 67.5
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 8.7e-72 274.6 191 70.2
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 8.7e-72 274.6 194 67.5
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 1.1e-71 274.2 195 67.7
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 1.5e-71 273.9 207 62.3
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 3.3e-71 272.7 207 62.3
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 4.3e-71 272.3 194 67.0
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 4.3e-71 272.3 186 71.0
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 5.7e-71 271.9 191 67.5
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 5.7e-71 271.9 190 67.4
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 9.7e-71 271.2 194 66.0
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 9.7e-71 271.2 194 66.5
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 9.7e-71 271.2 194 67.5
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.3e-70 270.8 194 64.9
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 1.3e-70 270.8 215 62.8
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 1.3e-70 270.8 193 64.8
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 2.8e-70 269.6 190 66.8
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 4.8e-70 268.9 207 61.4
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 4.8e-70 268.9 194 64.9
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 1.1e-69 267.7 194 66.5
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 1.4e-69 267.3 190 66.3
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 2.4e-69 266.5 207 60.4
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 3.1e-69 266.2 194 64.9
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 6.9e-69 265.0 193 65.3
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 9.0e-69 264.6 207 59.9
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 1.2e-68 264.2 207 60.4
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.2e-68 264.2 208 65.4
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 1.5e-68 263.8 207 62.3
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 1.5e-68 263.8 207 60.9
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 1.5e-68 263.8 207 60.9
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 2.6e-68 263.1 174 71.8
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 2.6e-68 263.1 208 65.4
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 4.5e-68 262.3 190 65.3
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 4.5e-68 262.3 191 66.5
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 7.7e-68 261.5 188 66.0
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.0e-67 261.2 219 61.6
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.7e-67 260.4 206 62.1
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.7e-67 260.4 206 62.1
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 1.7e-67 260.4 174 70.7
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 2.2e-67 260.0 207 58.0
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 1.4e-66 257.3 220 59.1
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 4.2e-66 255.8 194 62.4
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 1.2e-65 254.2 218 58.3
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 3.6e-65 252.7 194 65.5
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 3.9e-64 249.2 195 63.1
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-61 240.7 499 37.3
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 1.8e-61 240.4 217 54.8
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 9.1e-61 238.0 193 60.1
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.2e-59 233.4 162 70.4
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 1.1e-58 231.1 162 69.1
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 1.1e-58 231.1 186 59.1
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-57 227.6 125 88.8
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 1.0e-56 224.6 189 58.7
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 3.0e-56 223.0 180 57.2
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 1.3e-54 217.6 215 53.5
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 1.5e-52 210.7 194 53.1
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 4.5e-52 209.1 192 57.3
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 6.5e-51 205.3 193 54.4
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-43 181.0 92 95.7
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.0e-40 169.5 97 86.6
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.2e-34 149.4 80 91.2
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 3.2e-21 106.7 71 63.4
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 1.6e-20 104.4 122 45.1
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 2.7e-20 103.6 97 51.5
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 3.5e-20 103.2 65 73.8
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.7e-19 100.9 75 66.7
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 8.6e-19 98.6 78 61.5
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.1e-18 98.2 77 62.3
Nn4g26176 Nelumbo nucifera HOM05D000321 ORTHO05D000204 1.9e-18 97.4 66 75.8
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 3.3e-18 96.7 125 42.4
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 8.0e-17 92.0 71 62.0
Nn2g13380 Nelumbo nucifera HOM05D007483 ORTHO05D009133 7.5e-15 85.5 90 46.7
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 2.9e-14 83.6 41 90.2
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 6.4e-14 82.4 74 56.8
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 4.1e-13 79.7 87 51.7
Nn1g05960 Nelumbo nucifera HOM05D000513 ORTHO05D011790 1.6e-12 77.8 145 35.9
Nn3g19134 Nelumbo nucifera HOM05D000071 ORTHO05D000029 2.3e-11 73.9 60 58.3
Nn8g41189 Nelumbo nucifera HOM05D000513 ORTHO05D011790 2.3e-11 73.9 71 50.7
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 1.1e-10 71.6 43 67.4
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 1.1e-10 71.6 43 67.4
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 1.1e-10 71.6 43 67.4
Nn2g12662 Nelumbo nucifera HOM05D000513 ORTHO05D011790 1.9e-10 70.9 69 49.3
Nn3g21973 Nelumbo nucifera HOM05D000513 ORTHO05D011790 1.9e-10 70.9 71 47.9
Nn1g01041 Nelumbo nucifera HOM05D000513 ORTHO05D011790 4.3e-10 69.7 122 36.9
Nn1g06414 Nelumbo nucifera HOM05D000513 ORTHO05D011790 7.3e-10 68.9 118 35.6
Nn1g02654 Nelumbo nucifera HOM05D000513 ORTHO05D009133 9.5e-10 68.6 71 47.9
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 4.0e-08 63.2 31 87.1
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 4.0e-08 63.2 31 87.1
Nn5g27400 Nelumbo nucifera HOM05D000513 ORTHO05D009133 5.2e-08 62.8 71 43.7
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.2e-07 61.6 32 81.2


User provided reference genes

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