Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 0.0e+00 1415.6 736 100.0
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 4.2e-285 984.6 733 71.6
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 2.6e-250 869.0 738 61.8
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.1e-248 863.6 738 61.5
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 6.8e-243 844.3 735 60.3
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 9.9e-242 840.5 733 61.0
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 9.9e-242 840.5 735 60.7
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 3.8e-241 838.6 732 60.1
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.9e-240 836.3 735 61.0
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.6e-239 833.2 737 61.6
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.7e-238 829.7 741 59.5
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 4.3e-237 825.1 733 59.8
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.3e-236 823.5 734 60.6
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 2.3e-230 802.7 736 59.2
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 2.3e-230 802.7 738 59.3
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.9e-229 799.7 743 59.5
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 9.6e-229 797.3 731 59.6
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 8.1e-228 794.3 731 59.4
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 4.0e-227 792.0 731 59.1
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 2.2e-225 786.2 730 59.6
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 2.9e-225 785.8 751 58.6
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 8.7e-222 774.2 733 57.6
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 1.1e-221 773.9 733 57.7
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 2.5e-221 772.7 736 57.9
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.1e-219 767.3 732 57.1
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 4.0e-219 765.4 737 56.7
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.6e-218 762.7 745 56.0
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 1.3e-217 760.4 743 56.9
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.3e-217 760.4 734 56.3
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 1.3e-217 760.4 684 59.6
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 1.7e-217 760.0 735 56.7
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 2.2e-217 759.6 733 56.3
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 6.5e-217 758.1 731 56.5
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 7.1e-216 754.6 759 57.7
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.2e-215 753.8 771 54.5
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 6.0e-215 751.5 734 57.2
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 7.9e-215 751.1 733 56.8
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 7.9e-215 751.1 734 56.7
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.0e-214 750.7 732 55.2
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 3.3e-213 745.7 773 57.2
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 4.3e-213 745.3 732 54.8
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 5.7e-213 745.0 733 55.8
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 3.1e-211 739.2 736 55.7
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 5.3e-211 738.4 742 55.3
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.2e-210 737.3 734 56.4
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.3e-209 733.8 735 55.0
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.8e-209 732.3 750 57.1
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 3.8e-209 732.3 731 54.4
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 5.0e-209 731.9 734 54.5
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 8.4e-209 731.1 731 54.9
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 2.5e-208 729.6 773 53.4
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.2e-207 727.2 751 56.2
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.5e-207 725.7 730 55.5
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 8.7e-206 721.1 735 54.1
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 8.7e-206 721.1 750 56.5
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.9e-205 719.9 734 53.4
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 1.9e-205 719.9 732 53.4
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 4.3e-205 718.8 736 56.1
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.7e-205 718.4 733 54.0
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.4e-205 718.0 734 53.8
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.3e-204 717.2 729 55.7
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 2.2e-204 716.5 750 53.9
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 6.3e-204 714.9 732 54.1
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 1.1e-203 714.1 740 53.4
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.1e-203 714.1 732 54.9
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.4e-203 713.8 735 52.1
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.1e-203 712.6 734 53.5
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 5.3e-203 711.8 732 55.6
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.5e-202 710.3 735 53.7
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 3.4e-202 709.1 564 65.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 3.4e-202 709.1 724 54.4
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.1e-200 704.1 732 54.1
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 3.3e-197 692.6 731 52.1
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 6.9e-195 684.9 750 53.9
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 2.0e-194 683.3 750 54.8
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.7e-193 680.2 683 54.9
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 5.5e-192 675.2 750 54.3
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 3.9e-190 669.1 732 51.4
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 6.7e-190 668.3 751 51.0
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 3.3e-189 666.0 741 51.0
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.3e-189 666.0 731 51.2
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 4.4e-189 665.6 744 50.7
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 1.7e-188 663.7 744 50.0
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.7e-188 663.7 741 49.7
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 2.2e-188 663.3 745 49.8
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 4.8e-188 662.1 743 51.0
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 4.8e-188 662.1 751 53.5
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 8.2e-188 661.4 646 56.2
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.4e-187 660.6 741 50.6
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 1.8e-187 660.2 751 51.3
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 9.1e-187 657.9 740 50.8
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 2.0e-186 656.8 742 51.8
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 2.6e-186 656.4 744 50.0
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 2.6e-186 656.4 735 54.3
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 3.5e-186 656.0 753 50.3
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 4.5e-186 655.6 827 48.0
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 5.9e-186 655.2 735 53.9
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 1.0e-185 654.4 742 50.7
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 2.9e-185 652.9 769 48.5
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 8.5e-185 651.4 649 57.0
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 7.2e-184 648.3 732 49.5
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 6.7e-182 641.7 639 56.0
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 1.5e-181 640.6 684 52.2
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 5.7e-181 638.6 785 47.9
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 7.5e-181 638.3 661 53.3
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 7.5e-181 638.3 659 53.1
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.5e-173 614.0 731 48.2
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 4.2e-168 595.9 700 49.9
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 1.2e-167 594.3 772 46.5
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 8.0e-167 591.7 728 47.7
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 5.7e-165 585.5 653 51.5
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 2.7e-154 550.1 692 46.7
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 2.9e-148 530.0 564 54.8
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.9e-147 527.3 654 46.0
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.2e-146 524.6 817 40.3
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 2.1e-138 497.3 487 54.0
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 6.0e-138 495.7 740 44.7
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 9.5e-136 488.4 735 41.9
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 9.5e-136 488.4 758 44.2
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.0e-129 468.4 764 40.4
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.1e-110 405.2 886 34.2
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.9e-96 357.8 527 42.1
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 6.3e-95 352.8 557 39.1
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.4e-80 303.5 470 38.7
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.2e-69 268.9 451 38.6
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 3.8e-68 263.8 691 29.8
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 5.9e-53 213.4 222 46.8
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 6.3e-47 193.4 206 51.9
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 7.0e-46 189.9 126 74.6
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 3.8e-44 184.1 314 37.6
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.6e-42 178.7 134 61.9
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 2.3e-41 174.9 220 45.5
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 8.9e-41 172.9 95 82.1
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.0e-37 161.8 110 70.0
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.0e-36 159.5 98 78.6
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.8e-33 148.7 131 58.8
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 3.4e-32 144.4 95 71.6
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 9.9e-24 116.3 124 47.6
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 1.6e-18 99.0 257 33.5
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 2.2e-15 88.6 130 39.2
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 4.1e-14 84.3 96 49.0
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 2.5e-11 75.1 430 28.6
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 2.8e-10 71.6 194 38.1
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 2.9e-07 61.6 177 33.3
AagrBONN_evm.TU.Sc2ySwM_344.3436 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.4e-06 59.3 56 57.1
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 2.4e-06 58.5 70 42.9
Thhalv10006543m.g Eutrema salsugineum HOM05D001439 ORTHO05D002726 5.4e-06 57.4 110 35.5
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 5.4e-06 57.4 70 41.4
Peaxi162Scf00926g00006 Petunia axillaris HOM05D001439 ORTHO05D002726 7.1e-06 57.0 70 38.6
Nn1g06413 Nelumbo nucifera HOM05D001439 ORTHO05D002726 9.3e-06 56.6 278 27.0


User provided reference genes

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