Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 2.3e-47 191.8 93 100.0
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 3.2e-36 154.8 92 77.2
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 3.9e-34 147.9 92 75.0
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 8.6e-34 146.7 92 75.0
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.2e-32 142.9 93 72.0
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.1e-32 142.1 91 74.7
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 2.8e-32 141.7 91 76.9
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 6.2e-32 140.6 93 72.0
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.8e-31 139.0 92 69.6
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 2.3e-31 138.7 92 71.7
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 3.1e-31 138.3 93 69.9
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 4.0e-31 137.9 90 75.6
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 5.2e-31 137.5 92 68.5
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 5.2e-31 137.5 92 68.5
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 6.8e-31 137.1 92 71.7
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 8.9e-31 136.7 90 71.1
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 1.2e-30 136.3 92 71.7
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 1.2e-30 136.3 85 72.9
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.5e-30 136.0 85 74.1
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 2.0e-30 135.6 92 69.6
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.0e-30 135.6 93 66.7
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.6e-30 135.2 84 73.8
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 3.4e-30 134.8 93 67.7
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 3.4e-30 134.8 91 72.5
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 3.4e-30 134.8 93 71.0
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 3.4e-30 134.8 85 72.9
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 3.4e-30 134.8 89 71.9
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 4.4e-30 134.4 93 65.6
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 5.8e-30 134.0 87 71.3
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 9.8e-30 133.3 93 64.5
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 9.8e-30 133.3 86 73.3
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 9.8e-30 133.3 92 70.7
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 9.8e-30 133.3 93 65.6
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.7e-29 132.5 93 64.5
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.7e-29 132.5 93 64.5
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.2e-29 132.1 90 68.9
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 2.2e-29 132.1 83 75.9
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 2.2e-29 132.1 83 75.9
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 2.9e-29 131.7 94 66.0
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.9e-29 131.7 95 67.4
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 3.7e-29 131.3 88 72.7
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 3.7e-29 131.3 93 68.8
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 4.9e-29 131.0 93 66.7
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 4.9e-29 131.0 83 72.3
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 6.4e-29 130.6 88 68.2
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 6.4e-29 130.6 95 66.3
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 1.9e-28 129.0 88 71.6
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 3.2e-28 128.3 79 70.9
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 4.1e-28 127.9 88 67.0
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 7.1e-28 127.1 88 67.0
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 7.1e-28 127.1 88 67.0
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 7.1e-28 127.1 95 64.2
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 1.2e-27 126.3 89 69.7
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.6e-27 125.9 90 65.6
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.6e-27 125.9 94 63.8
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.6e-27 125.9 93 64.5
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.6e-27 125.9 76 75.0
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.6e-27 125.9 95 63.2
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 2.1e-27 125.6 84 71.4
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.7e-27 125.2 93 69.9
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 2.7e-27 125.2 93 67.7
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 2.7e-27 125.2 95 63.2
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 3.5e-27 124.8 93 64.5
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.5e-27 124.8 95 62.1
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 3.5e-27 124.8 75 76.0
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 4.6e-27 124.4 95 62.1
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 4.6e-27 124.4 84 66.7
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 7.8e-27 123.6 95 61.1
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.7e-26 122.5 93 63.4
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.7e-26 122.5 87 65.5
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 3.0e-26 121.7 75 74.7
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 3.0e-26 121.7 85 67.1
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 5.1e-26 120.9 106 56.6
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 6.6e-26 120.6 74 73.0
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 8.6e-26 120.2 92 63.0
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 8.6e-26 120.2 92 63.0
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 8.6e-26 120.2 74 74.3
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.5e-25 119.4 72 76.4
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 1.9e-25 119.0 86 64.0
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.9e-25 119.0 72 73.6
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.5e-25 118.6 79 69.6
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 3.3e-25 118.2 92 63.0
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 3.3e-25 118.2 92 62.0
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 3.3e-25 118.2 92 62.0
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 4.3e-25 117.9 91 60.4
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 5.6e-25 117.5 95 64.2
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 7.3e-25 117.1 92 59.8
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.2e-24 116.3 82 63.4
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.2e-24 116.3 95 61.1
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 1.2e-24 116.3 85 67.1
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 1.6e-24 115.9 72 72.2
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 2.8e-24 115.2 88 63.6
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 2.8e-24 115.2 84 61.9
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 3.6e-24 114.8 80 68.8
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 3.6e-24 114.8 84 59.5
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 4.7e-24 114.4 85 65.9
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 4.7e-24 114.4 85 65.9
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 6.2e-24 114.0 98 61.2
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 6.2e-24 114.0 88 62.5
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 6.2e-24 114.0 73 69.9
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.1e-23 113.2 73 69.9
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.1e-23 113.2 73 69.9
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 1.4e-23 112.8 80 66.2
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.8e-23 112.5 92 58.7
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.8e-23 112.5 81 67.9
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.8e-23 112.5 81 65.4
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.8e-23 112.5 78 66.7
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.3e-23 112.1 95 58.9
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.3e-23 112.1 78 66.7
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 4.0e-23 111.3 84 65.5
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 4.0e-23 111.3 83 66.3
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 5.2e-23 110.9 72 73.6
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 5.2e-23 110.9 79 63.3
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 6.8e-23 110.5 83 66.3
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 6.8e-23 110.5 90 61.1
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 6.8e-23 110.5 80 68.8
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.2e-22 109.8 71 70.4
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 2.6e-22 108.6 84 66.7
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 2.6e-22 108.6 84 66.7
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 2.6e-22 108.6 83 65.1
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 2.6e-22 108.6 83 65.1
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 3.4e-22 108.2 84 66.7
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 3.4e-22 108.2 82 64.6
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 3.4e-22 108.2 79 62.0
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 5.8e-22 107.5 84 65.5
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 5.8e-22 107.5 86 55.8
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 5.8e-22 107.5 78 66.7
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-21 106.3 76 68.4
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.4e-20 102.8 79 59.5
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 1.4e-20 102.8 73 65.8
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 2.4e-20 102.1 66 72.7
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.1e-20 101.3 82 59.8
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.2e-19 99.8 70 67.1
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 2.3e-18 95.5 84 57.1
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.9e-17 92.4 56 76.8
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.5e-17 92.0 59 72.9
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 3.3e-17 91.7 61 73.8
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 5.6e-17 90.9 64 64.1
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 5.6e-17 90.9 64 64.1
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 9.6e-17 90.1 59 71.2
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.2e-16 89.7 80 55.0
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.6e-16 89.4 57 68.4
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 2.1e-16 89.0 82 56.1
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.6e-16 88.2 68 57.4
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.8e-15 85.9 69 60.9
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.8e-15 85.9 68 57.4
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.4e-15 85.5 62 67.7
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 3.1e-15 85.1 65 60.0
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.0e-15 84.7 57 66.7
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.4e-14 81.6 50 76.0
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-12 76.6 108 40.7
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.7e-11 72.0 44 72.7
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.3e-10 68.9 63 44.4
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 3.9e-10 68.2 57 54.4
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.9e-09 65.9 40 72.5
GSVIVG01015950001 Vitis vinifera HOM05D004571 ORTHO05D005334 9.0e-07 57.0 41 61.0
Cre12.g515150 Chlamydomonas reinhardtii HOM05D004571 ORTHO05D005334 3.4e-06 55.1 83 33.7


User provided reference genes

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