Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 0.0e+00 2320.4 1383 100.0
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 0.0e+00 1099.0 1411 55.4
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 1.9e-209 734.2 1437 43.7
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 7.4e-190 669.1 1481 40.7
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 9.7e-190 668.7 1521 40.6
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.0e-186 658.7 773 49.9
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 2.1e-176 624.4 1493 36.6
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.5e-174 618.2 1104 39.0
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 1.7e-170 604.7 1567 34.6
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.6e-168 598.2 1109 38.8
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 2.7e-168 597.4 1125 37.8
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 2.4e-164 584.3 1105 37.3
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 9.1e-164 582.4 1130 35.9
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 4.0e-159 567.0 1404 41.6
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 5.2e-159 566.6 1080 37.1
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 7.0e-156 556.2 1060 37.9
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 4.1e-148 530.4 846 40.9
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.9e-146 524.2 944 39.4
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 3.6e-144 517.3 1039 37.6
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.2e-142 512.3 1098 35.0
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 1.2e-142 512.3 1275 32.7
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 3.4e-142 510.8 899 38.9
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.9e-138 497.3 1091 34.9
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 2.5e-137 494.6 1092 35.2
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.2e-136 490.0 1109 34.7
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 3.1e-135 487.6 1044 36.2
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 3.4e-134 484.2 1113 34.4
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.1e-131 474.9 1112 34.0
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.7e-130 471.9 1529 33.0
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 6.6e-130 469.9 1040 35.1
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 2.6e-126 458.0 1122 33.6
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.3e-125 455.7 1510 32.3
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 2.2e-125 454.9 1516 29.1
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 1.4e-124 452.2 1506 32.5
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 3.2e-124 451.1 850 37.1
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 4.1e-124 450.7 1079 34.0
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 1.1e-121 442.6 1523 35.7
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 8.9e-119 433.0 1071 33.2
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 8.9e-119 433.0 1028 34.5
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 5.8e-118 430.3 1029 34.7
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.2e-115 422.5 1073 32.8
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 2.7e-115 421.4 1112 33.2
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 1.3e-114 419.1 1030 33.5
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.6e-114 416.8 885 35.0
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 3.3e-113 414.5 995 33.8
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.3e-113 414.5 1028 33.9
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 8.1e-112 409.8 1102 31.5
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 4.0e-111 407.5 934 35.0
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 2.2e-109 401.7 1040 32.9
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 1.1e-108 399.4 1102 30.9
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 1.1e-108 399.4 1050 32.5
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 4.2e-108 397.5 1516 30.4
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 5.4e-108 397.1 1437 31.3
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 2.1e-107 395.2 1425 34.6
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 1.7e-106 392.1 1429 31.4
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 3.0e-106 391.3 1453 32.3
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 8.7e-106 389.8 978 33.3
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 2.5e-105 388.3 1052 30.9
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 1.3e-104 386.0 1045 32.9
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 4.0e-103 380.9 1114 32.0
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.5e-102 379.0 1458 35.1
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 9.9e-102 376.3 1042 32.6
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 1.2e-99 369.4 808 34.8
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 4.8e-96 357.5 1058 32.1
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.2e-94 352.8 852 33.3
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 9.9e-94 349.7 1103 30.6
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 6.4e-93 347.1 1111 30.6
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 8.4e-93 346.7 1045 31.4
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 1.5e-86 325.9 1036 29.7
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 3.4e-86 324.7 1454 29.2
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 1.0e-85 323.2 1099 29.7
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 4.2e-84 317.8 924 31.8
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 6.0e-83 313.9 951 30.1
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 3.1e-79 301.6 834 32.4
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 1.5e-78 299.3 940 28.9
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 5.9e-78 297.4 1040 29.6
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 1.3e-77 296.2 1045 29.4
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 2.2e-77 295.4 812 31.9
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 8.5e-77 293.5 940 30.3
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 7.2e-76 290.4 1040 29.1
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.0e-74 286.6 946 29.1
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 1.8e-74 285.8 1042 29.0
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.3e-74 285.4 944 29.1
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 2.5e-73 282.0 1389 27.5
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 1.3e-72 279.6 1047 29.4
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.4e-71 276.2 437 41.2
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.4e-71 276.2 437 41.2
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.4e-71 276.2 437 41.2
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.8e-71 275.8 950 27.9
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 1.4e-68 266.2 950 28.3
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 2.5e-68 265.4 944 28.2
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 3.2e-68 265.0 944 28.2
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.2e-67 263.1 1024 27.9
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 1.6e-67 262.7 826 30.8
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 3.6e-67 261.5 944 29.0
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 1.8e-66 259.2 833 27.6
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 1.5e-65 256.1 1037 27.1
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 2.0e-65 255.8 948 28.4
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 2.8e-64 251.9 941 28.3
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 3.1e-63 248.4 871 28.2
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 5.3e-63 247.7 701 29.2
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.5e-62 246.1 1037 26.9
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.2e-59 236.5 1041 27.1
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 4.7e-59 234.6 690 30.4
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 5.2e-58 231.1 1039 26.5
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 2.8e-56 225.3 678 28.2
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 1.3e-53 216.5 827 28.7
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.3e-53 216.5 447 38.5
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 2.1e-51 209.1 718 29.8
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 2.2e-45 189.1 1174 24.2
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 3.2e-44 185.3 235 46.8
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 5.7e-41 174.5 1017 25.0
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 1.6e-38 166.4 671 27.7
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 2.1e-35 156.0 478 27.4
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 1.0e-34 153.7 396 28.8
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 1.8e-34 152.9 293 35.2
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 4.0e-34 151.8 297 36.0
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 2.4e-31 142.5 1025 34.6
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 3.5e-30 138.7 482 29.3
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 4.5e-30 138.3 147 52.4
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 2.9e-29 135.6 265 38.5
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 3.3e-28 132.1 148 55.4
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 7.3e-28 131.0 146 47.3
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 4.0e-26 125.2 142 54.2
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 2.0e-25 122.9 902 22.4
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.7e-24 119.8 116 58.6
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 1.2e-22 113.6 331 29.3
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 1.2e-22 113.6 331 28.7
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 6.0e-22 111.3 331 28.7
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.5e-20 106.7 144 38.2
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.3e-18 99.4 125 48.0
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 8.9e-18 97.4 130 40.8
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 1.1e-15 90.5 142 44.4
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 1.9e-15 89.7 106 50.9
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 2.4e-15 89.4 155 47.7
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 9.2e-15 87.4 106 49.1
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 2.1e-14 86.3 87 51.7
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 2.3e-13 82.8 126 39.7
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.1e-12 80.5 105 41.9
SEGI_31962 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.9e-12 79.7 363 27.0
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 9.5e-12 77.4 434 23.3
PSO541G4161 Papaver somniferum HOM05D026995 ORTHO05D005585 1.2e-11 77.0 128 41.4
Aqoxy2G01760 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 4.7e-11 75.1 86 46.5
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 1.1e-10 73.9 226 31.4
FAN25G0646 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.4e-09 68.6 174 37.4
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 1.9e-07 63.2 195 27.7
Aqoxy7G00167 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 2.4e-07 62.8 79 48.1
Aqoxy7G00171 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 2.4e-07 62.8 79 48.1
Aqoxy88s005 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 2.4e-07 62.8 79 48.1
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 3.5e-06 58.9 139 33.8


User provided reference genes

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