Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 1.6e-94 349.4 168 100.0
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 1.8e-82 309.3 167 86.2
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 1.7e-80 302.8 167 85.0
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 3.8e-80 301.6 166 86.1
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 3.8e-80 301.6 166 86.1
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 4.9e-80 301.2 167 83.8
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 4.9e-80 301.2 167 83.8
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 1.9e-79 299.3 166 84.9
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 2.4e-79 298.9 167 83.2
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 3.2e-79 298.5 167 82.0
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 5.5e-79 297.7 167 82.6
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 9.3e-79 297.0 166 84.9
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 1.6e-78 296.2 166 84.9
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 2.1e-78 295.8 167 83.2
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 2.1e-78 295.8 167 82.0
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 1.0e-77 293.5 167 79.6
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 1.8e-77 292.7 167 79.6
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 3.0e-77 292.0 167 80.2
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 3.0e-77 292.0 167 82.0
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 6.7e-77 290.8 166 81.9
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 8.7e-77 290.4 167 79.0
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 1.5e-76 289.7 167 80.2
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 1.9e-76 289.3 167 79.6
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 3.3e-76 288.5 168 79.8
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 3.3e-76 288.5 167 80.2
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 7.4e-76 287.3 167 80.8
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 7.4e-76 287.3 167 78.4
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 9.6e-76 287.0 167 78.4
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 9.6e-76 287.0 167 77.8
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 9.6e-76 287.0 166 76.5
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 9.6e-76 287.0 183 77.0
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 1.6e-75 286.2 167 79.0
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 1.6e-75 286.2 167 79.6
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 1.6e-75 286.2 167 79.6
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 1.6e-75 286.2 167 79.6
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 1.6e-75 286.2 167 80.2
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 2.1e-75 285.8 167 77.8
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 2.8e-75 285.4 167 80.2
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 4.8e-75 284.6 167 78.4
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 4.8e-75 284.6 166 76.5
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 4.8e-75 284.6 166 76.5
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 6.2e-75 284.3 167 79.6
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 8.1e-75 283.9 167 77.8
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 1.4e-74 283.1 166 78.3
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 1.8e-74 282.7 166 77.7
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 5.3e-74 281.2 166 77.7
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 9.0e-74 280.4 167 79.0
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 9.0e-74 280.4 166 78.3
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 1.2e-73 280.0 166 77.7
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 1.2e-73 280.0 167 78.4
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 1.5e-73 279.6 166 76.5
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 2.0e-73 279.3 166 77.1
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 2.0e-73 279.3 166 76.5
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 2.0e-73 279.3 167 76.0
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 2.0e-73 279.3 166 77.1
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 2.0e-73 279.3 167 76.6
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 2.6e-73 278.9 167 74.9
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 4.5e-73 278.1 191 70.2
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 5.8e-73 277.7 166 75.9
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 7.6e-73 277.3 168 75.6
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 7.6e-73 277.3 162 79.6
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 2.9e-72 275.4 166 74.7
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 2.9e-72 275.4 166 76.5
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 4.9e-72 274.6 167 75.4
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 6.5e-72 274.2 166 77.1
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 8.4e-72 273.9 166 75.3
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 1.1e-71 273.5 166 74.1
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 2.5e-71 272.3 166 75.3
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 3.2e-71 271.9 167 76.0
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 1.2e-70 270.0 167 73.7
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 2.7e-70 268.9 167 75.4
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 5.1e-69 264.6 167 70.1
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 5.1e-69 264.6 166 71.1
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 8.7e-69 263.8 165 74.5
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 8.7e-69 263.8 167 70.1
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 1.1e-68 263.5 167 69.5
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 1.9e-68 262.7 167 69.5
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 1.9e-68 262.7 167 70.7
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 2.5e-68 262.3 167 70.7
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 4.3e-68 261.5 166 72.9
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 5.7e-68 261.2 167 68.9
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 7.4e-68 260.8 167 68.9
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 9.6e-68 260.4 167 71.3
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 4.8e-67 258.1 167 68.9
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 6.3e-67 257.7 167 69.5
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 1.1e-66 256.9 167 72.5
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 1.4e-66 256.5 166 68.7
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 6.9e-66 254.2 167 70.1
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 1.0e-64 250.4 145 80.7
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 2.9e-64 248.8 189 66.7
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 4.2e-63 245.0 167 68.9
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 7.2e-63 244.2 166 65.7
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.2e-62 243.4 167 64.7
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 1.9e-60 236.1 166 63.3
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 9.7e-60 233.8 166 63.9
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 4.8e-59 231.5 166 63.9
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 2.4e-58 229.2 167 60.5
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 4.1e-58 228.4 162 69.1
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 8.8e-53 210.7 296 41.9
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 6.3e-51 204.5 113 84.1
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 5.3e-50 201.4 122 77.9
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 3.4e-49 198.7 167 61.7
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 2.7e-46 189.1 167 49.7
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 4.4e-44 181.8 113 70.8
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 7.4e-44 181.0 167 46.1
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 1.2e-41 173.7 169 47.9
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 6.1e-38 161.4 166 44.0
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 5.7e-36 154.8 87 74.7
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 2.0e-33 146.4 168 41.7
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.0e-32 144.1 192 37.0
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 1.7e-32 143.3 167 48.5
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 6.1e-30 134.8 165 40.6
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 3.1e-26 122.5 128 40.6
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 1.3e-24 117.1 190 34.2
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 8.8e-21 104.4 181 36.5
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 7.0e-18 94.7 55 74.5
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 2.0e-12 76.6 39 79.5
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 8.6e-08 61.2 163 25.8


User provided reference genes

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