Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 2.7e-183 645.2 320 100.0
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 1.8e-99 366.7 313 65.8
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 8.7e-94 347.8 309 62.1
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 4.4e-85 318.9 309 57.0
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 1.1e-83 314.3 308 57.5
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 7.7e-82 308.1 309 55.7
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 7.7e-82 308.1 310 56.8
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 2.7e-79 299.7 309 55.0
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 1.4e-78 297.4 309 55.3
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 1.8e-78 297.0 305 53.4
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 1.8e-78 297.0 312 57.1
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 2.0e-77 293.5 307 53.1
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 7.4e-77 291.6 309 53.1
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 1.3e-76 290.8 309 52.4
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 1.3e-76 290.8 309 52.4
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 3.7e-76 289.3 309 53.1
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 4.8e-76 288.9 309 51.8
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 4.8e-76 288.9 311 53.1
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 1.4e-75 287.3 310 52.3
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 3.1e-75 286.2 305 52.1
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 3.1e-75 286.2 314 54.1
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 4.1e-75 285.8 310 51.3
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 5.3e-75 285.4 312 51.9
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 1.2e-74 284.3 308 54.2
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 4.5e-74 282.3 310 52.3
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 5.9e-74 282.0 310 52.3
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 1.3e-73 280.8 266 56.8
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 2.9e-73 279.6 312 51.0
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 3.8e-73 279.3 286 53.8
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 6.5e-73 278.5 313 53.4
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 8.5e-73 278.1 311 51.8
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 8.5e-73 278.1 309 51.8
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 1.5e-72 277.3 310 51.0
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 1.5e-72 277.3 310 51.0
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 1.9e-72 276.9 310 51.9
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 2.5e-72 276.6 307 51.5
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 2.5e-72 276.6 309 53.1
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 4.2e-72 275.8 318 50.6
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 4.2e-72 275.8 331 51.7
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 4.2e-72 275.8 307 52.4
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 5.5e-72 275.4 308 50.6
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 7.2e-72 275.0 331 51.7
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 1.2e-71 274.2 312 50.6
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 1.6e-71 273.9 311 51.8
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 2.1e-71 273.5 308 49.4
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 3.6e-71 272.7 310 51.3
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 4.7e-71 272.3 310 51.3
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 4.7e-71 272.3 311 49.5
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 6.1e-71 271.9 311 51.8
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 1.4e-70 270.8 308 50.3
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 3.0e-70 269.6 310 51.6
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 3.0e-70 269.6 310 49.7
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 6.7e-70 268.5 309 51.1
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 8.8e-70 268.1 308 49.4
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 1.2e-69 267.7 266 53.8
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 2.6e-69 266.5 333 49.5
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 5.7e-69 265.4 307 49.5
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 9.7e-69 264.6 307 49.5
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 8.2e-68 261.5 308 49.7
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 8.2e-68 261.5 307 49.2
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 1.4e-67 260.8 280 50.4
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 5.3e-67 258.8 275 53.5
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 7.0e-67 258.5 303 49.2
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 1.6e-66 257.3 310 49.0
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 2.0e-66 256.9 303 48.2
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 2.7e-66 256.5 303 48.5
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 7.7e-66 255.0 262 52.3
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 7.7e-66 255.0 280 49.6
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 7.7e-66 255.0 281 49.5
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 1.7e-65 253.8 244 57.8
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 2.9e-65 253.1 302 48.3
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 2.9e-65 253.1 302 48.3
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 5.0e-65 252.3 302 48.3
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 5.0e-65 252.3 278 51.4
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 8.5e-65 251.5 302 48.3
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 1.5e-64 250.8 236 55.5
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 7.2e-64 248.4 308 46.8
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 7.2e-64 248.4 237 56.1
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 1.2e-63 247.7 311 47.9
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 1.6e-63 247.3 281 50.2
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 2.7e-63 246.5 330 48.8
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 1.2e-61 241.1 167 73.7
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 2.0e-61 240.4 317 47.0
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 7.5e-61 238.4 310 46.1
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 1.4e-59 234.2 239 56.1
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 5.4e-59 232.3 166 71.7
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 7.0e-59 231.9 275 48.0
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 1.6e-58 230.7 293 46.4
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 1.0e-57 228.0 189 66.1
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 2.9e-57 226.5 268 48.9
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 2.9e-57 226.5 167 70.1
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 6.1e-55 218.8 177 63.8
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 1.7e-52 210.7 262 49.6
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 1.6e-50 204.1 311 43.7
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 8.3e-44 181.8 261 45.6
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 9.8e-37 158.3 198 45.5
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 8.3e-36 155.2 169 49.7
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 5.6e-32 142.5 195 46.2
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 4.6e-26 122.9 175 44.6
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 9.5e-24 115.2 65 80.0
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 2.4e-22 110.5 63 82.5
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 4.4e-21 106.3 71 69.0
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 5.6e-16 89.4 93 52.7
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 1.2e-15 88.2 64 65.6
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 1.6e-15 87.8 100 47.0
Nn2g13848 Nelumbo nucifera HOM05D000468 ORTHO05D000548 1.4e-14 84.7 55 74.5
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 5.2e-14 82.8 66 60.6
Potri.007G083100 Populus trichocarpa HOM05D007255 ORTHO05D009052 7.8e-10 68.9 34 91.2
CSS0036773 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-07 59.7 59 55.9


User provided reference genes

Program Settings