Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08267 Nelumbo nucifera HOM05D006338 ORTHO05D007946 8.3e-91 337.0 171 100.0
Nn4g23826 Nelumbo nucifera HOM05D006338 ORTHO05D007946 1.7e-40 169.9 117 81.2
Nn7g36735 Nelumbo nucifera HOM05D006338 ORTHO05D007946 2.3e-40 169.5 99 89.9
PSO384G1336 Papaver somniferum HOM05D006338 ORTHO05D007946 1.1e-34 150.6 104 69.2
TAR636G1296 Trochodendron aralioides HOM05D006338 ORTHO05D007946 1.2e-33 147.1 108 69.4
TAR633G1700 Trochodendron aralioides HOM05D006338 ORTHO05D007946 6.0e-33 144.8 100 77.0
Dinv32021 Davidia involucrata HOM05D006338 ORTHO05D007946 2.3e-32 142.9 99 68.7
Lsat_1_v5_gn_7_31600 Lactuca sativa HOM05D006338 ORTHO05D007946 2.3e-32 142.9 104 70.2
HanXRQChr04g0112891 Helianthus annuus HOM05D006338 ORTHO05D007946 3.9e-32 142.1 103 69.9
Hma1.2p1_0837F.1_g226010 Hydrangea macrophylla HOM05D006338 ORTHO05D007946 5.1e-32 141.7 106 67.9
Hma1.2p1_1202F.1_g266875 Hydrangea macrophylla HOM05D006338 ORTHO05D007946 5.1e-32 141.7 106 67.9
Dinv44690 Davidia involucrata HOM05D006338 ORTHO05D007946 6.6e-32 141.4 98 68.4
MD07G1049200 Malus domestica HOM05D006338 ORTHO05D007946 1.1e-31 140.6 100 67.0
Actinidia06233 Actinidia chinensis HOM05D006338 ORTHO05D007946 1.5e-31 140.2 100 71.0
GSVIVG01036669001 Vitis vinifera HOM05D006338 ORTHO05D007946 5.6e-31 138.3 100 69.0
MD02G1283700 Malus domestica HOM05D006338 ORTHO05D007946 7.3e-31 137.9 100 65.0
Actinidia10154 Actinidia chinensis HOM05D006338 ORTHO05D007946 1.3e-30 137.1 100 70.0
Aqoxy1G00369 Aquilegia oxysepala HOM05D006338 ORTHO05D007946 1.6e-30 136.7 104 64.4
Rhsim07G0067600 Rhododendron simsii HOM05D006338 ORTHO05D007946 1.6e-30 136.7 98 69.4
Prupe.2G038900 Prunus persica HOM05D006338 ORTHO05D007946 8.1e-30 134.4 100 66.0
Lj8A90T48 Lonicera japonica HOM05D006338 ORTHO05D007946 1.4e-29 133.7 99 63.6
TWI63G1844 Tripterygium wilfordii HOM05D006338 ORTHO05D007946 1.4e-29 133.7 99 64.6
PGR031G0010 Punica granatum HOM05D006338 ORTHO05D007946 1.8e-29 133.3 107 61.7
Sabra03G0145800 Salix brachista HOM05D006338 ORTHO05D007946 1.8e-29 133.3 99 64.6
FvH4_7g03360 Fragaria vesca HOM05D006338 ORTHO05D007946 2.4e-29 132.9 100 64.0
FAN03G0755 Fragaria x ananassa HOM05D006338 ORTHO05D007946 2.4e-29 132.9 100 64.0
FAN10G1196 Fragaria x ananassa HOM05D006338 ORTHO05D007946 2.4e-29 132.9 100 64.0
FAN06G4797 Fragaria x ananassa HOM05D006338 ORTHO05D007946 4.0e-29 132.1 100 64.0
TWI38G1861 Tripterygium wilfordii HOM05D006338 ORTHO05D007946 5.3e-29 131.7 100 66.0
Sc10g0004450 Simmondsia chinensis HOM05D006338 ORTHO05D007946 2.0e-28 129.8 109 64.2
Manes.11G006100 Manihot esculenta HOM05D006338 ORTHO05D007946 2.6e-28 129.4 99 60.6
Potri.003G195400 Populus trichocarpa HOM05D006338 ORTHO05D007946 2.6e-28 129.4 98 64.3
MSTRG.20508 Avicennia marina HOM05D006338 ORTHO05D007946 4.5e-28 128.6 98 66.3
ECA248G3412 Erigeron canadensis HOM05D006338 ORTHO05D007946 4.5e-28 128.6 95 67.4
Potri.001G028300 Populus trichocarpa HOM05D006338 ORTHO05D007946 5.8e-28 128.3 98 63.3
vmacro13757 Vaccinium macrocarpon HOM05D006338 ORTHO05D007946 7.6e-28 127.9 106 63.2
CSS0033972 Camellia sinensis var. sinensis HOM05D006338 ORTHO05D007946 9.9e-28 127.5 87 67.8
Nitab4.5_0003481g0060 Nicotiana tabacum HOM05D006338 ORTHO05D007946 1.3e-27 127.1 98 63.3
QL04p017585 Quercus lobata HOM05D006338 ORTHO05D007946 1.7e-27 126.7 99 63.6
Sabra01G0020600 Salix brachista HOM05D006338 ORTHO05D007946 1.7e-27 126.7 98 63.3
Atru.chr12.1255 Acer truncatum HOM05D006338 ORTHO05D007946 2.9e-27 125.9 99 61.6
Eucgr.G03226 Eucalyptus grandis HOM05D006338 ORTHO05D007946 2.9e-27 125.9 95 64.2
Aa31LG1G6220 Aethionema arabicum HOM05D006338 ORTHO05D007946 3.8e-27 125.6 100 65.0
Carub.0001s0767 Capsella rubella HOM05D006338 ORTHO05D007946 3.8e-27 125.6 100 64.0
Sp1g06950 Schrenkiella parvula HOM05D006338 ORTHO05D007946 3.8e-27 125.6 100 63.0
SalBow5G1402 Salvia bowleyana HOM05D006338 ORTHO05D007946 4.9e-27 125.2 98 63.3
VMungo1127G0668 Vigna mungo HOM05D006338 ORTHO05D007946 6.4e-27 124.8 101 61.4
CAN.G1045.21 Capsicum annuum HOM05D006338 ORTHO05D007946 8.4e-27 124.4 106 59.4
COL.COLO4_20675 Corchorus olitorius HOM05D006338 ORTHO05D007946 8.4e-27 124.4 100 62.0
MBI13_g38612_MAGBIO Magnolia biondii HOM05D006338 ORTHO05D007946 8.4e-27 124.4 104 61.5
Thecc.10G151000 Theobroma cacao HOM05D006338 ORTHO05D007946 8.4e-27 124.4 98 63.3
Ah.12g062770 Amaranthus hybridus HOM05D006338 ORTHO05D007946 1.4e-26 123.6 96 62.5
AL1G18730 Arabidopsis lyrata HOM05D006338 ORTHO05D007946 1.4e-26 123.6 100 62.0
PGSC0003DMG400040483 Solanum tuberosum HOM05D006338 ORTHO05D007946 1.4e-26 123.6 98 61.2
AT1G08315 Arabidopsis thaliana HOM05D006338 ORTHO05D007946 1.9e-26 123.2 100 62.0
CARHR008200 Cardamine hirsuta HOM05D006338 ORTHO05D007946 1.9e-26 123.2 100 62.0
Solyc01g096460.2 Solanum lycopersicum HOM05D006338 ORTHO05D007946 1.9e-26 123.2 98 60.2
Sopen01g040190 Solanum pennellii HOM05D006338 ORTHO05D007946 1.9e-26 123.2 98 60.2
Cc02_g29680 Coffea canephora HOM05D006338 ORTHO05D007946 2.4e-26 122.9 98 63.3
Migut.B01237 Erythranthe guttata HOM05D006338 ORTHO05D007946 2.4e-26 122.9 98 62.2
Nitab4.5_0005808g0050 Nicotiana tabacum HOM05D006338 ORTHO05D007946 2.4e-26 122.9 98 61.2
Lalb_Chr19g0133081 Lupinus albus HOM05D006338 ORTHO05D007946 4.2e-26 122.1 101 62.4
Phvul.L001620 Phaseolus vulgaris HOM05D006338 ORTHO05D007946 4.2e-26 122.1 101 61.4
SGA_v2.0_scaffold124G33609 Striga asiatica HOM05D006338 ORTHO05D007946 4.2e-26 122.1 98 60.2
Glyma.15G234200 Glycine max HOM05D006338 ORTHO05D007946 5.4e-26 121.7 101 59.4
Peaxi162Scf00082g00013 Petunia axillaris HOM05D006338 ORTHO05D007946 7.1e-26 121.3 90 62.2
CiPaw.14G008300 Carya illinoinensis HOM05D006338 ORTHO05D007946 9.3e-26 120.9 99 61.6
Duzib128G1584 Durio zibethinus HOM05D006338 ORTHO05D007946 1.2e-25 120.6 100 61.0
Ciclev10021235m.g Citrus clementina HOM05D006338 ORTHO05D007946 1.6e-25 120.2 99 61.6
CSS0012434 Camellia sinensis var. sinensis HOM05D006338 ORTHO05D007946 2.1e-25 119.8 100 64.0
CSS0026304 Camellia sinensis var. sinensis HOM05D006338 ORTHO05D007946 2.1e-25 119.8 100 64.0
Psat4g193800 Pisum sativum HOM05D006338 ORTHO05D007946 2.1e-25 119.8 101 59.4
THA.LOC104809822 Tarenaya hassleriana HOM05D006338 ORTHO05D007946 2.1e-25 119.8 90 65.6
Cpa.g.c43157 Carica papaya HOM05D006338 ORTHO05D007946 2.7e-25 119.4 101 62.4
Gohir.D05G283500 Gossypium hirsutum HOM05D006338 ORTHO05D007946 2.7e-25 119.4 98 60.2
Gorai.009G298000 Gossypium raimondii HOM05D006338 ORTHO05D007946 2.7e-25 119.4 98 60.2
Sed0013519 Sechium edule HOM05D006338 ORTHO05D007946 2.7e-25 119.4 93 65.6
Ca_23967_v3 Cicer arietinum L. HOM05D006338 ORTHO05D007946 4.6e-25 118.6 101 57.4
BcaB07g34077 Brassica carinata HOM05D006338 ORTHO05D007946 6.0e-25 118.2 100 58.0
A06p05340 Brassica napus HOM05D006338 ORTHO05D007946 6.0e-25 118.2 100 57.0
BraA06t23743Z Brassica rapa HOM05D006338 ORTHO05D007946 6.0e-25 118.2 100 57.0
Medtr8g039560 Medicago truncatula HOM05D006338 ORTHO05D007946 6.0e-25 118.2 101 57.4
ClCG08G010670 Citrullus lanatus HOM05D006338 ORTHO05D007946 7.9e-25 117.9 99 60.6
AUR62026882 Chenopodium quinoa HOM05D006338 ORTHO05D007946 1.0e-24 117.5 99 57.6
Gohir.A05G282300 Gossypium hirsutum HOM05D006338 ORTHO05D007946 1.0e-24 117.5 98 59.2
C05p06440 Brassica napus HOM05D006338 ORTHO05D007946 1.8e-24 116.7 100 57.0
C05p06470 Brassica napus HOM05D006338 ORTHO05D007946 1.8e-24 116.7 100 57.0
BolC5t29405H Brassica oleracea HOM05D006338 ORTHO05D007946 1.8e-24 116.7 100 57.0
BolC5t29407H Brassica oleracea HOM05D006338 ORTHO05D007946 1.8e-24 116.7 100 57.0
CsaV3_6G035860 Cucumis sativus L. HOM05D006338 ORTHO05D007946 1.8e-24 116.7 93 63.4
Thhalv10010031m.g Eutrema salsugineum HOM05D006338 ORTHO05D007946 1.8e-24 116.7 93 62.4
MELO3C011394.2 Cucumis melo HOM05D006338 ORTHO05D007946 2.3e-24 116.3 99 59.6
Duzib114G0257 Durio zibethinus HOM05D006338 ORTHO05D007946 3.9e-24 115.5 100 59.0
HPP92_006729 Vanilla planifolia HOM05D006338 ORTHO05D007946 6.7e-24 114.8 100 57.0
DCAR_003626 Daucus carota HOM05D006338 ORTHO05D007946 8.7e-24 114.4 100 58.0
Glyma.13G195900 Glycine max HOM05D006338 ORTHO05D007946 8.7e-24 114.4 95 57.9
Lj3g0017268 Lotus japonicus HOM05D006338 ORTHO05D007946 1.5e-23 113.6 101 58.4
CiPaw.13G014600 Carya illinoinensis HOM05D006338 ORTHO05D007946 2.5e-23 112.8 99 58.6
Gohir.D10G193200 Gossypium hirsutum HOM05D006338 ORTHO05D007946 9.6e-23 110.9 100 57.0
Gorai.011G216000 Gossypium raimondii HOM05D006338 ORTHO05D007946 2.8e-22 109.4 100 56.0
Cfa010924 Carpinus fangiana HOM05D006338 ORTHO05D007946 1.8e-21 106.7 99 55.6
PSO339G3787 Papaver somniferum HOM05D006338 ORTHO05D007946 2.4e-21 106.3 104 52.9
Gohir.A10G186200 Gossypium hirsutum HOM05D006338 ORTHO05D007946 4.0e-21 105.5 100 55.0
Nn7g37904 Nelumbo nucifera HOM05D006338 ORTHO05D007946 4.0e-21 105.5 104 60.6
unitig_8.g3782 Utricularia gibba HOM05D006338 ORTHO05D007946 4.0e-21 105.5 98 55.1
RcHm_v2.0_Chr1g0325681 Rosa chinensis HOM05D006338 ORTHO05D007946 9.0e-21 104.4 79 65.8
Haze_03018 Corylus avellana HOM05D006338 ORTHO05D007946 1.5e-20 103.6 99 55.6
Haze_03025 Corylus avellana HOM05D006338 ORTHO05D007946 1.5e-20 103.6 99 55.6
Glyma.04G135700 Glycine max HOM05D006338 ORTHO05D007946 1.0e-19 100.9 114 57.0
arahy.Tifrunner.gnm1.ann1.XVKA12 Arachis hypogaea HOM05D006338 ORTHO05D007946 1.3e-19 100.5 110 53.6
Ca_05571_v3 Cicer arietinum L. HOM05D006338 ORTHO05D007946 7.1e-18 94.7 95 50.5
Lalb_Chr03g0032071 Lupinus albus HOM05D006338 ORTHO05D007946 6.0e-17 91.7 67 65.7
VMungo1080G1396 Vigna mungo HOM05D006338 ORTHO05D007946 1.3e-16 90.5 135 46.7
Os01g0956075 Oryza sativa ssp. japonica HOM05D006338 ORTHO05D007946 3.9e-16 89.0 90 50.0
ATR0745G013 Amborella trichopoda HOM05D006338 ORTHO05D007946 4.3e-15 85.5 104 48.1
Nn1g04352 Nelumbo nucifera HOM05D000497 ORTHO05D000020 1.1e-13 80.9 48 77.1
Nn6g33477 Nelumbo nucifera HOM05D000497 ORTHO05D000020 4.5e-12 75.5 51 70.6
SEGI_33417 Sequoiadendron giganteum HOM05D006338 ORTHO05D007946 1.1e-10 70.9 92 43.5
Zm00001eb140580 Zea mays HOM05D006338 ORTHO05D007946 7.1e-10 68.2 94 44.7
SMO118G0213 Selaginella moellendorffii HOM05D006338 ORTHO05D007946 1.2e-09 67.4 116 32.8
TAR629G3507 Trochodendron aralioides HOM05D000215 ORTHO05D003454 3.5e-09 65.9 92 40.2
TWI75G0857 Tripterygium wilfordii HOM05D000215 ORTHO05D003454 3.9e-08 62.4 113 36.3
MELO3C008310.2 Cucumis melo HOM05D000215 ORTHO05D008904 1.5e-07 60.5 89 39.3
CsaV3_6G001940 Cucumis sativus L. HOM05D000215 ORTHO05D008904 1.9e-07 60.1 89 39.3
unitig_749.g14336 Utricularia gibba HOM05D006338 ORTHO05D007946 2.5e-07 59.7 60 50.0
Atru.chr11.2006 Acer truncatum HOM05D000215 ORTHO05D003454 3.3e-07 59.3 96 35.4
Haze_07494 Corylus avellana HOM05D000198 ORTHO05D003454 3.3e-07 59.3 92 35.9
Thecc.03G009700 Theobroma cacao HOM05D000215 ORTHO05D003454 3.3e-07 59.3 92 37.0
Duzib268G0442 Durio zibethinus HOM05D000215 ORTHO05D003454 4.3e-07 58.9 92 35.9
Sc12g0005410 Simmondsia chinensis HOM05D000215 ORTHO05D003454 4.3e-07 58.9 92 37.0
EL10Ac5g10778 Beta vulgaris HOM05D000215 ORTHO05D003454 5.7e-07 58.5 92 35.9
Glyma.17G090900 Glycine max HOM05D000215 ORTHO05D003454 5.7e-07 58.5 92 32.6
AagrBONN_evm.TU.Sc2ySwM_228.2258 Anthoceros agrestis HOM05D000215 ORTHO05D007946 7.4e-07 58.2 94 36.2
MELO3C002253.2 Cucumis melo HOM05D000215 ORTHO05D003454 7.4e-07 58.2 92 35.9
Cfa019096 Carpinus fangiana HOM05D000215 ORTHO05D003454 9.7e-07 57.8 92 35.9
ClCG11G006020 Citrullus lanatus HOM05D000215 ORTHO05D008904 9.7e-07 57.8 89 38.2
CsaV3_1G008380 Cucumis sativus L. HOM05D000215 ORTHO05D003454 9.7e-07 57.8 92 34.8
Prupe.1G255000 Prunus persica HOM05D000215 ORTHO05D003454 9.7e-07 57.8 96 33.3
vmacro10024 Vaccinium macrocarpon HOM05D000215 ORTHO05D008904 9.7e-07 57.8 89 36.0
FAN13G1165 Fragaria x ananassa HOM05D000215 ORTHO05D003454 1.3e-06 57.4 92 34.8
Nn7g37379 Nelumbo nucifera HOM05D000497 ORTHO05D000020 1.3e-06 57.4 38 73.7
Ciclev10030876m.g Citrus clementina HOM05D000215 ORTHO05D003454 1.6e-06 57.0 92 37.0
Hma1.2p1_0867F.1_g230280 Hydrangea macrophylla HOM05D000215 ORTHO05D003454 1.6e-06 57.0 131 34.4
Lalb_Chr07g0182661 Lupinus albus HOM05D000215 ORTHO05D003454 1.6e-06 57.0 116 27.6
Nn4g22820 Nelumbo nucifera HOM05D000215 ORTHO05D003454 1.6e-06 57.0 92 34.8
Pp3c26_8290 Physcomitrium patens HOM05D006338 ORTHO05D007946 1.6e-06 57.0 97 35.1
COL.COLO4_34053 Corchorus olitorius HOM05D000215 ORTHO05D003454 2.2e-06 56.6 92 33.7
Gohir.A03G140500 Gossypium hirsutum HOM05D000215 ORTHO05D003454 2.2e-06 56.6 92 34.8
RcHm_v2.0_Chr7g0193831 Rosa chinensis HOM05D000215 ORTHO05D003454 2.2e-06 56.6 92 33.7
ClCG01G013020 Citrullus lanatus HOM05D000215 ORTHO05D003454 2.8e-06 56.2 92 34.8
FAN17G0144 Fragaria x ananassa HOM05D000215 ORTHO05D003454 2.8e-06 56.2 92 35.9
FAN18G1564 Fragaria x ananassa HOM05D000215 ORTHO05D003454 2.8e-06 56.2 92 33.7
FAN18G3289 Fragaria x ananassa HOM05D000215 ORTHO05D003454 2.8e-06 56.2 92 33.7
FAN22G2389 Fragaria x ananassa HOM05D000215 ORTHO05D003454 2.8e-06 56.2 92 34.8
Lsat_1_v5_gn_2_123761 Lactuca sativa HOM05D000215 ORTHO05D008904 2.8e-06 56.2 92 30.4
RcHm_v2.0_Chr4g0443981 Rosa chinensis HOM05D000215 ORTHO05D003454 2.8e-06 56.2 92 37.0
VMungo1215G2056 Vigna mungo HOM05D000215 ORTHO05D003454 2.8e-06 56.2 92 33.7
CANSAT80G2714 Cannabis sativa HOM05D000215 ORTHO05D003454 3.7e-06 55.8 120 25.8
Ca_21908_v3 Cicer arietinum L. HOM05D000215 ORTHO05D003454 3.7e-06 55.8 92 34.8
Ca_21926_v3 Cicer arietinum L. HOM05D000215 ORTHO05D003454 3.7e-06 55.8 92 34.8
DCAR_026125 Daucus carota HOM05D000215 ORTHO05D003454 3.7e-06 55.8 92 35.9
FvH4_4g34620 Fragaria vesca HOM05D000215 ORTHO05D003454 3.7e-06 55.8 92 34.8
FAN12G0634 Fragaria x ananassa HOM05D000215 ORTHO05D003454 3.7e-06 55.8 92 34.8
Lj4g0021268 Lotus japonicus HOM05D000215 ORTHO05D003454 3.7e-06 55.8 92 33.7
Cc04_g12840 Coffea canephora HOM05D000215 ORTHO05D003454 4.8e-06 55.5 92 35.9
Atru.chr9.2445 Acer truncatum HOM05D000215 ORTHO05D003454 6.3e-06 55.1 92 34.8
Manes.12G029900 Manihot esculenta HOM05D000215 ORTHO05D003454 6.3e-06 55.1 82 37.8
Oeu001742.1 Olea europaea HOM05D000215 ORTHO05D003454 6.3e-06 55.1 132 30.3
FAN07G1479 Fragaria x ananassa HOM05D000215 ORTHO05D003454 8.2e-06 54.7 92 34.8
FAN08G0733 Fragaria x ananassa HOM05D000215 ORTHO05D003454 8.2e-06 54.7 92 32.6
MBI15_g31113_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D003454 8.2e-06 54.7 92 40.2
Phvul.003G199200 Phaseolus vulgaris HOM05D000215 ORTHO05D003454 8.2e-06 54.7 92 31.5
QL10p012119 Quercus lobata HOM05D000215 ORTHO05D003454 8.2e-06 54.7 92 33.7


User provided reference genes

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