Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08251 Nelumbo nucifera HOM05D000154 ORTHO05D277571 5.3e-47 190.7 94 100.0
Nn1g08032 Nelumbo nucifera HOM05D000154 ORTHO05D000092 8.2e-16 87.0 46 97.8
Nn1g08234 Nelumbo nucifera HOM05D000154 ORTHO05D000092 8.2e-16 87.0 46 97.8
PSO541G6014 Papaver somniferum HOM05D000154 ORTHO05D011669 1.4e-10 69.7 42 85.7
ATR0686G057 Amborella trichopoda HOM05D000154 ORTHO05D000092 1.5e-09 66.2 77 50.6
HPP92_023204 Vanilla planifolia HOM05D000154 ORTHO05D000092 5.7e-09 64.3 46 73.9
MBI07_g03833_MAGBIO Magnolia biondii HOM05D000154 ORTHO05D000092 2.2e-08 62.4 42 78.6
Sabra14G0098700 Salix brachista HOM05D000154 ORTHO05D000092 8.2e-08 60.5 77 45.5
ClCG09G006160 Citrullus lanatus HOM05D000154 ORTHO05D000092 1.4e-07 59.7 73 47.9
MELO3C016040.2 Cucumis melo HOM05D000154 ORTHO05D000092 1.4e-07 59.7 73 47.9
CsaV3_7G029000 Cucumis sativus L. HOM05D000154 ORTHO05D000092 1.4e-07 59.7 73 47.9
Sed0003142 Sechium edule HOM05D000154 ORTHO05D000092 1.4e-07 59.7 74 47.3
CsaV3_7G029020 Cucumis sativus L. HOM05D000154 ORTHO05D000092 1.8e-07 59.3 76 47.4
Medtr7g108480 Medicago truncatula HOM05D000154 ORTHO05D000092 2.4e-07 58.9 73 50.7
Sabra14G0098800 Salix brachista HOM05D000154 ORTHO05D000092 2.4e-07 58.9 77 44.2
TWI14G0312 Tripterygium wilfordii HOM05D000154 ORTHO05D000092 2.4e-07 58.9 78 48.7
Potri.014G132500 Populus trichocarpa HOM05D000154 ORTHO05D000092 3.1e-07 58.5 77 45.5
MD11G1302600 Malus domestica HOM05D000154 ORTHO05D000092 4.1e-07 58.2 77 46.8
MD11G1303100 Malus domestica HOM05D000154 ORTHO05D000092 4.1e-07 58.2 77 46.8
Nitab4.5_0001697g0080 Nicotiana tabacum HOM05D000154 ORTHO05D000092 4.1e-07 58.2 70 48.6
Nitab4.5_0007365g0020 Nicotiana tabacum HOM05D000154 ORTHO05D000092 4.1e-07 58.2 70 48.6
Thecc.01G294700 Theobroma cacao HOM05D000154 ORTHO05D000092 4.1e-07 58.2 74 48.6
Duzib138G0541 Durio zibethinus HOM05D000154 ORTHO05D000092 5.3e-07 57.8 74 48.6
TWI14G0572 Tripterygium wilfordii HOM05D000154 ORTHO05D000092 5.3e-07 57.8 78 47.4
MELO3C017828.2 Cucumis melo HOM05D000154 ORTHO05D000092 9.1e-07 57.0 79 48.1
Ca_09138_v3 Cicer arietinum L. HOM05D000154 ORTHO05D000092 1.2e-06 56.6 71 45.1
Haze_04867 Corylus avellana HOM05D000154 ORTHO05D000092 1.2e-06 56.6 69 50.7
MELO3C016041.2 Cucumis melo HOM05D000154 ORTHO05D000092 1.5e-06 56.2 73 47.9
CsaV3_7G028990 Cucumis sativus L. HOM05D000154 ORTHO05D000092 1.5e-06 56.2 73 47.9
Psat3g023880 Pisum sativum HOM05D000154 ORTHO05D000092 1.5e-06 56.2 70 45.7
MELO3C017974.2 Cucumis melo HOM05D000154 ORTHO05D000092 2.0e-06 55.8 74 44.6
Duzib077G0001 Durio zibethinus HOM05D000154 ORTHO05D000092 2.0e-06 55.8 74 48.6
Duzib138G1621 Durio zibethinus HOM05D000154 ORTHO05D000092 2.0e-06 55.8 74 48.6
Solyc09g074800.2 Solanum lycopersicum HOM05D000154 ORTHO05D000092 2.0e-06 55.8 70 47.1
PGSC0003DMG401011387 Solanum tuberosum HOM05D000154 ORTHO05D000092 2.0e-06 55.8 70 47.1
arahy.Tifrunner.gnm1.ann1.4S1WXZ Arachis hypogaea HOM05D000154 ORTHO05D000092 2.6e-06 55.5 70 45.7
CiPaw.08G098100 Carya illinoinensis HOM05D000154 ORTHO05D000092 2.6e-06 55.5 74 45.9
CiPaw.08G098200 Carya illinoinensis HOM05D000154 ORTHO05D000092 2.6e-06 55.5 74 45.9
ClCG10G010690 Citrullus lanatus HOM05D000154 ORTHO05D000092 2.6e-06 55.5 74 44.6
Gohir.A12G009900 Gossypium hirsutum HOM05D000154 ORTHO05D000092 2.6e-06 55.5 70 45.7
MBI19_g13574_MAGBIO Magnolia biondii HOM05D000154 ORTHO05D000092 2.6e-06 55.5 42 66.7
MD11G1302900 Malus domestica HOM05D000154 ORTHO05D000092 2.6e-06 55.5 77 44.2
QL04p070795 Quercus lobata HOM05D000154 ORTHO05D000092 2.6e-06 55.5 73 47.9
QL12p030402 Quercus lobata HOM05D000154 ORTHO05D000092 2.6e-06 55.5 73 47.9
Sopen09g029640 Solanum pennellii HOM05D000154 ORTHO05D000092 2.6e-06 55.5 70 47.1
Aqoxy2G03032 Aquilegia oxysepala HOM05D000154 ORTHO05D000092 3.4e-06 55.1 76 44.7
CsaV3_4G000620 Cucumis sativus L. HOM05D000154 ORTHO05D000092 3.4e-06 55.1 74 44.6
Actinidia09166 Actinidia chinensis HOM05D000154 ORTHO05D000092 4.5e-06 54.7 66 48.5
Cfa005980 Carpinus fangiana HOM05D000154 ORTHO05D000092 4.5e-06 54.7 73 47.9
Haze_04869 Corylus avellana HOM05D000154 ORTHO05D000092 4.5e-06 54.7 73 46.6
CsaV3_4G002080 Cucumis sativus L. HOM05D000154 ORTHO05D000092 4.5e-06 54.7 79 48.1
Duzib133G1158 Durio zibethinus HOM05D000154 ORTHO05D000092 4.5e-06 54.7 74 44.6
CAN.G1471.1 Capsicum annuum HOM05D000154 ORTHO05D000092 5.9e-06 54.3 70 45.7
Cpa.g.sc9.194 Carica papaya HOM05D000154 ORTHO05D000092 5.9e-06 54.3 70 45.7
COL.COLO4_00368 Corchorus olitorius HOM05D000154 ORTHO05D000092 5.9e-06 54.3 74 47.3
COL.COLO4_23402 Corchorus olitorius HOM05D000154 ORTHO05D000092 5.9e-06 54.3 70 45.7
Nitab4.5_0001697g0040 Nicotiana tabacum HOM05D000154 ORTHO05D000092 5.9e-06 54.3 69 49.3
RcHm_v2.0_Chr6g0293251 Rosa chinensis HOM05D000154 ORTHO05D000092 5.9e-06 54.3 73 45.2
TPR.G9650 Trifolium pratense HOM05D000154 ORTHO05D000092 5.9e-06 54.3 73 45.2
FAN27G1960 Fragaria x ananassa HOM05D000154 ORTHO05D000092 7.7e-06 53.9 73 45.2
Prupe.8G256200 Prunus persica HOM05D000154 ORTHO05D000092 7.7e-06 53.9 73 43.8
QL12p030024 Quercus lobata HOM05D000154 ORTHO05D000092 7.7e-06 53.9 70 47.1


User provided reference genes

Program Settings