Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08189 Nelumbo nucifera HOM05D000796 ORTHO05D035910 3.8e-46 188.0 105 100.0
HanXRQChr14g0435711 Helianthus annuus HOM05D000796 ORTHO05D000674 1.2e-15 86.7 50 96.0
Lsat_1_v5_gn_2_47461 Lactuca sativa HOM05D000796 ORTHO05D000674 1.6e-15 86.3 50 94.0
Dinv38174 Davidia involucrata HOM05D000796 ORTHO05D000674 2.7e-15 85.5 53 90.6
CAN.G1155.31 Capsicum annuum HOM05D000796 ORTHO05D000674 3.5e-15 85.1 50 92.0
CSS0038473 Camellia sinensis var. sinensis HOM05D000796 ORTHO05D000674 7.7e-15 84.0 53 88.7
Actinidia21259 Actinidia chinensis HOM05D000796 ORTHO05D000674 1.3e-14 83.2 53 88.7
TAR636G1439 Trochodendron aralioides HOM05D000796 ORTHO05D000674 1.3e-14 83.2 50 90.0
Dinv27200 Davidia involucrata HOM05D000796 ORTHO05D000674 1.7e-14 82.8 53 86.8
Sc13g0000410 Simmondsia chinensis HOM05D000796 ORTHO05D000674 2.2e-14 82.4 53 86.8
CDE02G4118 Ceratophyllum demersum HOM05D000796 ORTHO05D000674 6.5e-14 80.9 50 86.0
FvH4_4g13320 Fragaria vesca HOM05D000796 ORTHO05D000674 6.5e-14 80.9 53 86.8
FAN05G3784 Fragaria x ananassa HOM05D000796 ORTHO05D000674 6.5e-14 80.9 53 86.8
FAN07G2747 Fragaria x ananassa HOM05D000796 ORTHO05D000674 6.5e-14 80.9 53 86.8
FAN12G4004 Fragaria x ananassa HOM05D000796 ORTHO05D000674 6.5e-14 80.9 53 86.8
FAN17G2744 Fragaria x ananassa HOM05D000796 ORTHO05D000674 6.5e-14 80.9 53 86.8
FAN22G0451 Fragaria x ananassa HOM05D000796 ORTHO05D000674 6.5e-14 80.9 53 86.8
Lj6A382T17 Lonicera japonica HOM05D000796 ORTHO05D000674 6.5e-14 80.9 53 86.8
Prupe.1G164800 Prunus persica HOM05D000796 ORTHO05D000674 6.5e-14 80.9 50 90.0
ECA238G4095 Erigeron canadensis HOM05D000796 ORTHO05D000674 8.5e-14 80.5 50 90.0
Actinidia35842 Actinidia chinensis HOM05D000796 ORTHO05D000674 1.1e-13 80.1 53 84.9
RcHm_v2.0_Chr4g0413621 Rosa chinensis HOM05D000796 ORTHO05D000674 1.1e-13 80.1 53 86.8
CDE02G1729 Ceratophyllum demersum HOM05D000796 ORTHO05D000674 1.9e-13 79.3 50 86.0
Psat5g100240 Pisum sativum HOM05D000796 ORTHO05D000674 3.2e-13 78.6 50 82.0
CANSAT78G0533 Cannabis sativa HOM05D000796 ORTHO05D000674 4.2e-13 78.2 53 83.0
Medtr3g084090 Medicago truncatula HOM05D000796 ORTHO05D000674 4.2e-13 78.2 50 82.0
TPR.G13219 Trifolium pratense HOM05D000796 ORTHO05D000674 4.2e-13 78.2 50 82.0
MD05G1230600 Malus domestica HOM05D000796 ORTHO05D000674 5.5e-13 77.8 53 84.9
Rhsim09G0060100 Rhododendron simsii HOM05D000796 ORTHO05D000674 5.5e-13 77.8 53 83.0
TAR362G0457 Trochodendron aralioides HOM05D000796 ORTHO05D000674 5.5e-13 77.8 53 84.9
Lj6g0014221 Lotus japonicus HOM05D000796 ORTHO05D000674 7.2e-13 77.4 49 85.7
Oeu034320.1 Olea europaea HOM05D000796 ORTHO05D000674 7.2e-13 77.4 52 84.6
Cfa014997 Carpinus fangiana HOM05D000796 ORTHO05D000674 9.5e-13 77.0 50 84.0
Haze_11651 Corylus avellana HOM05D000796 ORTHO05D000674 9.5e-13 77.0 50 84.0
QL06p025978 Quercus lobata HOM05D000796 ORTHO05D000674 9.5e-13 77.0 53 83.0
Ca_16402_v3 Cicer arietinum L. HOM05D000796 ORTHO05D000674 1.2e-12 76.6 49 83.7
Migut.G00759 Erythranthe guttata HOM05D000796 ORTHO05D000674 1.2e-12 76.6 45 91.1
Sed0014910 Sechium edule HOM05D000796 ORTHO05D000674 1.2e-12 76.6 53 83.0
CiPaw.01G117100 Carya illinoinensis HOM05D000796 ORTHO05D000674 1.6e-12 76.3 53 81.1
MELO3C020428.2 Cucumis melo HOM05D000796 ORTHO05D000674 1.6e-12 76.3 53 81.1
Oeu056427.1 Olea europaea HOM05D000796 ORTHO05D000674 1.6e-12 76.3 53 81.1
HanXRQChr02g0058491 Helianthus annuus HOM05D000796 ORTHO05D000674 2.1e-12 75.9 50 82.0
CsaV3_2G011740 Cucumis sativus L. HOM05D000796 ORTHO05D000674 2.7e-12 75.5 53 79.2
arahy.Tifrunner.gnm1.ann1.EB8TWM Arachis hypogaea HOM05D000796 ORTHO05D000674 3.6e-12 75.1 49 83.7
arahy.Tifrunner.gnm1.ann1.ISNY9U Arachis hypogaea HOM05D000796 ORTHO05D000674 3.6e-12 75.1 49 83.7
AUR62020860 Chenopodium quinoa HOM05D000796 ORTHO05D000674 3.6e-12 75.1 53 81.1
vmacro00438 Vaccinium macrocarpon HOM05D000796 ORTHO05D000674 3.6e-12 75.1 53 83.0
VMungo1383G2956 Vigna mungo HOM05D000796 ORTHO05D000674 3.6e-12 75.1 49 83.7
Cc00_g31940 Coffea canephora HOM05D000796 ORTHO05D000674 4.7e-12 74.7 52 80.8
Lalb_Chr08g0230441 Lupinus albus HOM05D000796 ORTHO05D000674 4.7e-12 74.7 49 81.6
PGR083G2194 Punica granatum HOM05D000796 ORTHO05D000674 4.7e-12 74.7 54 81.5
Solyc09g092330.3 Solanum lycopersicum HOM05D000796 ORTHO05D000674 4.7e-12 74.7 41 92.7
Sopen09g035230 Solanum pennellii HOM05D000796 ORTHO05D000674 4.7e-12 74.7 41 92.7
Cfa009354 Carpinus fangiana HOM05D000796 ORTHO05D000674 6.1e-12 74.3 50 82.0
Duzib268G0321 Durio zibethinus HOM05D000796 ORTHO05D000674 6.1e-12 74.3 50 80.0
COL.COLO4_20226 Corchorus olitorius HOM05D000796 ORTHO05D000674 8.0e-12 73.9 50 80.0
Potri.001G320000 Populus trichocarpa HOM05D000796 ORTHO05D000674 8.0e-12 73.9 53 79.2
DCAR_024535 Daucus carota HOM05D000796 ORTHO05D000674 1.0e-11 73.6 50 76.0
Nitab4.5_0004850g0010 Nicotiana tabacum HOM05D000796 ORTHO05D000674 1.0e-11 73.6 41 90.2
PGSC0003DMG400020589 Solanum tuberosum HOM05D000796 ORTHO05D000674 1.0e-11 73.6 41 90.2
TWI73G1011 Tripterygium wilfordii HOM05D000796 ORTHO05D000674 1.0e-11 73.6 53 75.5
Manes.03G144400 Manihot esculenta HOM05D000796 ORTHO05D000674 1.4e-11 73.2 50 78.0
Nitab4.5_0000697g0180 Nicotiana tabacum HOM05D000796 ORTHO05D000674 1.4e-11 73.2 41 87.8
Cpa.g.sc157.50 Carica papaya HOM05D000796 ORTHO05D000674 1.8e-11 72.8 50 78.0
Thecc.04G195300 Theobroma cacao HOM05D000796 ORTHO05D000674 1.8e-11 72.8 50 78.0
Duzib212G0769 Durio zibethinus HOM05D000796 ORTHO05D000674 2.3e-11 72.4 50 78.0
Duzib151G0865 Durio zibethinus HOM05D000796 ORTHO05D000674 3.0e-11 72.0 50 78.0
Glyma.18G002200 Glycine max HOM05D000796 ORTHO05D000674 3.0e-11 72.0 48 81.2
Potri.017G059100 Populus trichocarpa HOM05D000796 ORTHO05D000674 3.0e-11 72.0 53 77.4
Eucgr.H02683 Eucalyptus grandis HOM05D000796 ORTHO05D000674 4.0e-11 71.6 53 75.5
DCAR_026652 Daucus carota HOM05D000796 ORTHO05D000674 5.2e-11 71.2 53 71.7
Glyma.11G254900 Glycine max HOM05D000796 ORTHO05D000674 5.2e-11 71.2 48 79.2
Gohir.A10G127600 Gossypium hirsutum HOM05D000796 ORTHO05D000674 5.2e-11 71.2 50 74.0
Manes.15G056600 Manihot esculenta HOM05D000796 ORTHO05D000674 5.2e-11 71.2 50 74.0
Gohir.D10G138400 Gossypium hirsutum HOM05D000796 ORTHO05D000674 6.8e-11 70.9 50 74.0
Gorai.011G153500 Gossypium raimondii HOM05D000796 ORTHO05D000674 6.8e-11 70.9 50 74.0
EL10Ac3g07456 Beta vulgaris HOM05D000796 ORTHO05D000674 8.8e-11 70.5 53 77.4
Solyc12g098480.1 Solanum lycopersicum HOM05D000796 ORTHO05D035910 1.5e-10 69.7 54 77.8
unitig_37.g12035 Utricularia gibba HOM05D000796 ORTHO05D000674 1.5e-10 69.7 52 78.8
Lsat_1_v5_gn_6_59160 Lactuca sativa HOM05D000796 ORTHO05D000674 2.0e-10 69.3 41 82.9
Sabra16G0202700 Salix brachista HOM05D000796 ORTHO05D000674 2.0e-10 69.3 53 73.6
CSS0012851 Camellia sinensis var. sinensis HOM05D000796 ORTHO05D000674 3.4e-10 68.6 45 77.8
CSS0016774 Camellia sinensis var. sinensis HOM05D000796 ORTHO05D000674 3.4e-10 68.6 45 77.8
Ciclev10004881m.g Citrus clementina HOM05D000796 ORTHO05D000674 3.4e-10 68.6 53 71.7
Sabra17G0052700 Salix brachista HOM05D000796 ORTHO05D000674 3.4e-10 68.6 53 71.7
Atru.chr4.1580 Acer truncatum HOM05D000796 ORTHO05D000674 5.7e-10 67.8 48 75.0
Peaxi162Scf00652g00014 Petunia axillaris HOM05D000796 ORTHO05D000674 1.3e-09 66.6 41 85.4
Aqoxy2G03935 Aquilegia oxysepala HOM05D000796 ORTHO05D000674 2.2e-09 65.9 44 81.8
CiPaw.02G064600 Carya illinoinensis HOM05D000796 ORTHO05D000674 2.2e-09 65.9 53 73.6
Phvul.001G267000 Phaseolus vulgaris HOM05D000796 ORTHO05D000674 6.3e-09 64.3 44 81.8
A01p31210 Brassica napus HOM05D000796 ORTHO05D000674 8.3e-09 63.9 47 74.5
BolC1t03930H Brassica oleracea HOM05D000796 ORTHO05D000674 8.3e-09 63.9 47 74.5
BraA01t03246Z Brassica rapa HOM05D000796 ORTHO05D000674 8.3e-09 63.9 47 74.5
PSO017G4744 Papaver somniferum HOM05D000796 ORTHO05D000674 8.3e-09 63.9 40 87.5
PSO063G4923 Papaver somniferum HOM05D000796 ORTHO05D000674 8.3e-09 63.9 40 87.5
Gohir.A02G019300 Gossypium hirsutum HOM05D000796 ORTHO05D000674 1.1e-08 63.5 47 74.5
Gohir.D02G022600 Gossypium hirsutum HOM05D000796 ORTHO05D000674 1.1e-08 63.5 47 74.5
Gorai.005G028000 Gossypium raimondii HOM05D000796 ORTHO05D000674 1.1e-08 63.5 47 74.5
Peaxi162Scf00047g10011 Petunia axillaris HOM05D000796 ORTHO05D000674 1.1e-08 63.5 41 80.5
Aa31LG8G10430 Aethionema arabicum HOM05D000796 ORTHO05D000674 1.4e-08 63.2 48 70.8
MBI07_g45037_MAGBIO Magnolia biondii HOM05D000796 ORTHO05D000674 1.4e-08 63.2 38 86.8
C01p39760 Brassica napus HOM05D000796 ORTHO05D000674 1.8e-08 62.8 47 72.3
AUR62018558 Chenopodium quinoa HOM05D000796 ORTHO05D000674 1.8e-08 62.8 39 84.6
SalBow8G0192 Salvia bowleyana HOM05D000796 ORTHO05D000674 1.8e-08 62.8 36 91.7
Hund19008 Selenicereus undatus HOM05D000796 ORTHO05D000674 1.8e-08 62.8 41 82.9
unitig_92.g28202 Utricularia gibba HOM05D000796 ORTHO05D000674 1.8e-08 62.8 51 72.5
Hund24412 Selenicereus undatus HOM05D000796 ORTHO05D000674 2.4e-08 62.4 48 72.9
AL3G38810 Arabidopsis lyrata HOM05D000796 ORTHO05D000674 3.1e-08 62.0 48 68.8
AT3G23820 Arabidopsis thaliana HOM05D000796 ORTHO05D000674 3.1e-08 62.0 48 68.8
BcaB04g20418 Brassica carinata HOM05D000796 ORTHO05D000674 3.1e-08 62.0 69 58.0
A03p43390 Brassica napus HOM05D000796 ORTHO05D000674 3.1e-08 62.0 47 72.3
A07p08540 Brassica napus HOM05D000796 ORTHO05D000674 3.1e-08 62.0 48 66.7
BraA03t13477Z Brassica rapa HOM05D000796 ORTHO05D000674 3.1e-08 62.0 47 72.3
BraA07t28638Z Brassica rapa HOM05D000796 ORTHO05D000674 3.1e-08 62.0 48 66.7
Carub.0003s2413 Capsella rubella HOM05D000796 ORTHO05D000674 3.1e-08 62.0 48 68.8
Sp3g21540 Schrenkiella parvula HOM05D000796 ORTHO05D000674 3.1e-08 62.0 48 68.8
BcaB06g26546 Brassica carinata HOM05D000796 ORTHO05D000674 4.1e-08 61.6 48 66.7
BcaC06g35578 Brassica carinata HOM05D000796 ORTHO05D000674 4.1e-08 61.6 48 66.7
C07p13320 Brassica napus HOM05D000796 ORTHO05D000674 4.1e-08 61.6 48 66.7
BolC7t41826H Brassica oleracea HOM05D000796 ORTHO05D000674 4.1e-08 61.6 48 66.7
CARHR099820 Cardamine hirsuta HOM05D000796 ORTHO05D000674 4.1e-08 61.6 48 68.8
Thhalv10002521m.g Eutrema salsugineum HOM05D000796 ORTHO05D000674 4.1e-08 61.6 48 68.8
HPP92_009943 Vanilla planifolia HOM05D000796 ORTHO05D000674 5.4e-08 61.2 95 48.4
BcaC01g03362 Brassica carinata HOM05D000796 ORTHO05D000674 7.0e-08 60.8 43 76.7
BolC3t17593H Brassica oleracea HOM05D000796 ORTHO05D000674 7.0e-08 60.8 43 76.7
Nitab4.5_0000676g0010 Nicotiana tabacum HOM05D000796 ORTHO05D000674 7.0e-08 60.8 40 80.0
MSTRG.4245 Avicennia marina HOM05D000796 ORTHO05D000674 9.2e-08 60.5 48 75.0
Ah.04g149370 Amaranthus hybridus HOM05D000796 ORTHO05D000674 1.2e-07 60.1 38 84.2
PGSC0003DMG400004659 Solanum tuberosum HOM05D000796 ORTHO05D000674 1.2e-07 60.1 40 77.5
THA.LOC104808695 Tarenaya hassleriana HOM05D000796 ORTHO05D000674 1.2e-07 60.1 43 74.4
C03p53320 Brassica napus HOM05D000796 ORTHO05D000674 1.6e-07 59.7 43 76.7
BcaB03g14611 Brassica carinata HOM05D000796 ORTHO05D000674 2.0e-07 59.3 48 66.7
Hma1.2p1_0349F.1_g132180 Hydrangea macrophylla HOM05D000796 ORTHO05D000674 2.7e-07 58.9 31 93.5
Nitab4.5_0007705g0010 Nicotiana tabacum HOM05D000796 ORTHO05D000674 2.7e-07 58.9 39 79.5
FAN15G3588 Fragaria x ananassa HOM05D000796 ORTHO05D035910 1.3e-06 56.6 33 84.8
PGSC0003DMG400015746 Solanum tuberosum HOM05D000796 ORTHO05D000674 3.8e-06 55.1 44 65.9
arahy.Tifrunner.gnm1.ann1.K1R19W Arachis hypogaea HOM05D000796 ORTHO05D000674 5.0e-06 54.7 48 70.8
ATR0561G031 Amborella trichopoda HOM05D000796 ORTHO05D000674 8.6e-06 53.9 42 69.0


User provided reference genes

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