Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 2.9e-257 891.3 438 100.0
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.3e-168 595.1 433 67.2
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 1.5e-149 533.5 432 61.6
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.7e-146 522.7 432 59.5
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.6e-141 506.1 430 60.2
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 1.7e-140 503.4 430 59.1
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 1.7e-140 503.4 427 58.3
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 1.6e-138 496.9 464 54.5
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 3.3e-136 489.2 464 55.2
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 6.3e-135 485.0 433 57.5
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 2.0e-133 479.9 427 56.2
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 7.7e-133 478.0 427 56.7
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.2e-132 476.5 427 57.1
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 3.8e-132 475.7 431 56.6
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 1.1e-131 474.2 428 56.3
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 2.5e-131 473.0 427 55.0
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 9.4e-131 471.1 463 52.9
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 9.4e-131 471.1 426 56.8
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.6e-130 470.3 427 55.7
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 7.9e-130 468.0 427 56.9
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 2.3e-129 466.5 427 57.1
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 3.9e-129 465.7 441 56.7
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 6.7e-129 464.9 433 55.2
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 6.7e-129 464.9 428 55.8
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 2.0e-128 463.4 426 54.5
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 3.3e-128 462.6 428 54.0
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 9.7e-128 461.1 441 55.3
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 1.7e-127 460.3 427 54.6
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 4.8e-127 458.8 427 54.1
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 8.2e-127 458.0 427 54.6
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 1.4e-126 457.2 424 54.7
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 2.4e-126 456.4 425 56.5
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 5.9e-125 451.8 430 53.5
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 8.5e-124 448.0 429 55.7
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 1.1e-123 447.6 454 52.9
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.5e-123 446.4 433 53.1
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 2.5e-123 446.4 426 54.2
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 4.7e-122 442.2 439 52.6
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.5e-120 437.2 435 53.3
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 2.6e-120 436.4 431 52.2
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 2.6e-120 436.4 434 53.2
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 1.4e-118 430.6 436 51.8
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 2.4e-118 429.9 427 53.6
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 5.3e-118 428.7 450 50.4
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 7.7e-117 424.9 448 50.7
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 1.0e-116 424.5 430 53.3
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 2.9e-116 422.9 427 52.2
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 8.5e-116 421.4 426 49.8
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 1.9e-115 420.2 424 51.9
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 5.5e-115 418.7 427 51.3
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 2.1e-114 416.8 428 52.8
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 2.7e-114 416.4 424 47.6
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 8.0e-114 414.8 426 47.9
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.4e-113 414.1 445 50.3
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.4e-113 414.1 445 50.3
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.8e-113 413.7 429 49.7
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 5.2e-113 412.1 429 52.4
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 6.8e-113 411.8 426 49.3
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 6.8e-113 411.8 428 51.6
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 8.8e-113 411.4 428 51.2
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 4.4e-112 409.1 437 47.8
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 5.7e-112 408.7 429 49.7
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 7.5e-112 408.3 437 48.3
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 9.7e-112 407.9 437 48.1
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 9.7e-112 407.9 430 48.6
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.8e-111 406.4 423 47.0
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.8e-111 406.4 429 48.7
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 3.7e-111 406.0 504 47.2
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 4.8e-111 405.6 426 48.1
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 1.8e-110 403.7 457 48.6
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.8e-110 403.7 457 48.6
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 2.4e-110 403.3 426 47.7
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 9.1e-110 401.4 426 47.9
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 1.2e-109 401.0 426 47.4
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.2e-109 401.0 426 48.6
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.2e-109 401.0 428 48.1
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.0e-109 400.2 433 49.9
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 5.9e-109 398.7 433 48.7
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.7e-108 397.1 509 45.4
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 8.5e-108 394.8 430 47.4
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 1.1e-107 394.4 430 47.9
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.1e-107 394.4 448 48.2
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.5e-107 394.0 439 51.3
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 7.2e-107 391.7 433 50.3
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 3.0e-105 386.3 434 48.4
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 5.2e-105 385.6 430 46.3
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 6.8e-105 385.2 422 46.4
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 8.8e-105 384.8 441 46.3
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 8.8e-105 384.8 487 44.6
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.0e-104 383.6 446 47.3
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.6e-104 383.3 426 46.5
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 4.4e-104 382.5 426 47.4
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 4.5e-101 372.5 432 47.7
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 3.6e-98 362.8 261 65.1
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 3.0e-97 359.8 478 42.9
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 8.9e-97 358.2 426 43.7
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 8.9e-97 358.2 266 68.8
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 7.5e-96 355.1 426 43.7
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 1.3e-95 354.4 362 55.2
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.2e-95 353.6 359 53.8
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 1.1e-94 351.3 426 44.4
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.4e-94 350.9 427 43.6
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.2e-90 337.8 425 43.1
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.8e-89 334.0 386 50.0
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.1e-86 324.7 431 41.5
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 2.4e-86 323.6 438 41.6
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.6e-85 320.9 431 45.7
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 1.0e-84 318.2 284 57.4
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 1.7e-84 317.4 428 41.8
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 6.6e-84 315.5 426 41.8
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 5.4e-78 295.8 354 43.5
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 4.6e-77 292.7 295 49.2
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.7e-76 290.8 265 58.9
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 6.6e-76 288.9 464 37.9
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.3e-68 264.6 258 53.5
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.9e-67 260.8 265 52.8
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 1.3e-63 248.1 266 50.8
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 7.1e-62 242.3 256 54.3
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 5.6e-59 232.6 341 40.2
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 5.6e-59 232.6 295 47.1
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 9.0e-57 225.3 327 41.6
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 4.9e-55 219.5 190 54.2
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 7.1e-54 215.7 262 50.0
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 6.6e-52 209.1 265 42.3
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 4.3e-51 206.5 163 55.2
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.8e-50 203.0 165 53.9
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.7e-47 194.5 251 47.4
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 8.4e-47 192.2 182 57.1
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 1.4e-46 191.4 132 65.9
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 6.0e-45 186.0 158 55.1
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 3.9e-44 183.3 139 59.7
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.7e-44 182.6 183 52.5
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 7.4e-43 179.1 183 51.9
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.2e-42 176.0 183 50.8
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 6.2e-42 176.0 348 35.6
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.1e-42 175.6 183 51.4
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.1e-42 175.6 183 51.4
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.1e-42 175.6 183 51.4
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.8e-40 169.5 183 52.5
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 8.4e-39 165.6 116 62.9
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 1.9e-38 164.5 216 48.6
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 7.9e-37 159.1 185 49.7
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 7.6e-32 142.5 108 58.3
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 6.5e-31 139.4 185 42.2
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 4.6e-29 133.3 206 43.2
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 3.9e-28 130.2 90 64.4
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.1e-28 129.8 183 42.1
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 2.8e-26 124.0 599 22.0
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 1.5e-24 118.2 86 65.1
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.5e-22 110.9 108 51.9
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 9.4e-22 109.0 111 50.5
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 7.9e-21 105.9 84 59.5
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-20 105.1 100 50.0
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.0e-20 104.0 78 59.0
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 5.3e-17 93.2 149 38.9
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.7e-15 88.2 72 55.6
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.9e-15 87.4 101 44.6
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 1.9e-14 84.7 67 55.2
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.4e-12 78.6 78 46.2
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.8e-12 78.2 84 45.2
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 2.6e-11 74.3 46 73.9
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 2.8e-10 70.9 79 45.6
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.6e-08 65.1 45 64.4
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.0e-07 62.4 44 56.8
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.2e-07 61.2 133 37.6
BcaB07g31053 Brassica carinata HOM05D003812 ORTHO05D004393 3.8e-07 60.5 65 46.2
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.8e-07 60.5 49 57.1
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.1e-06 58.9 47 59.6


User provided reference genes

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