Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08089 Nelumbo nucifera HOM05D000886 ORTHO05D000525 2.0e-32 141.7 68 100.0
Nn1g08090 Nelumbo nucifera HOM05D000886 ORTHO05D000525 9.7e-27 122.9 68 86.8
Nn1g08098 Nelumbo nucifera HOM05D000886 ORTHO05D000525 9.7e-27 122.9 68 86.8
Nn7g38225 Nelumbo nucifera HOM05D000886 ORTHO05D000525 5.2e-20 100.5 58 86.2
Thecc.04G304300 Theobroma cacao HOM05D000886 ORTHO05D000525 1.2e-16 89.4 67 62.7
DCAR_030457 Daucus carota HOM05D000886 ORTHO05D000525 5.5e-14 80.5 63 57.1
Duzib151G0423 Durio zibethinus HOM05D000886 ORTHO05D000525 2.7e-13 78.2 64 57.8
Gohir.A02G055600 Gossypium hirsutum HOM05D000886 ORTHO05D000525 8.0e-13 76.6 64 56.2
Nn4g25542 Nelumbo nucifera HOM05D000886 ORTHO05D000525 8.0e-13 76.6 65 52.3
Gorai.005G068300 Gossypium raimondii HOM05D000886 ORTHO05D000525 1.0e-12 76.3 64 54.7
Gohir.D02G060600 Gossypium hirsutum HOM05D000886 ORTHO05D000525 1.4e-12 75.9 64 54.7
TAR362G0630 Trochodendron aralioides HOM05D000886 ORTHO05D000525 1.8e-12 75.5 65 52.3
Manes.15G001700 Manihot esculenta HOM05D000886 ORTHO05D000525 2.0e-11 72.0 63 52.4
Cfa020108 Carpinus fangiana HOM05D000886 ORTHO05D000525 7.5e-11 70.1 67 52.2
Aqoxy7G03742 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 1.7e-10 68.9 58 55.2
CiPaw.01G136400 Carya illinoinensis HOM05D000886 ORTHO05D000525 2.8e-10 68.2 66 50.0
Cfa020109 Carpinus fangiana HOM05D000886 ORTHO05D000525 3.7e-10 67.8 67 50.7
TAR374G0369 Trochodendron aralioides HOM05D000886 ORTHO05D000525 4.8e-10 67.4 60 58.3
TAR362G0877 Trochodendron aralioides HOM05D000886 ORTHO05D000525 1.8e-09 65.5 60 56.7
SGA_v2.0_scaffold66G22468 Striga asiatica HOM05D000886 ORTHO05D000525 2.4e-09 65.1 64 45.3
MBI05_g08258_MAGBIO Magnolia biondii HOM05D048651 ORTHO05D004199 4.1e-09 64.3 60 50.0
MBI18_g35538_MAGBIO Magnolia biondii HOM05D000886 ORTHO05D000525 4.1e-09 64.3 60 50.0
Manes.03G206700 Manihot esculenta HOM05D000886 ORTHO05D000525 4.1e-09 64.3 59 52.5
Sc25g0005550 Simmondsia chinensis HOM05D000886 ORTHO05D000525 4.1e-09 64.3 65 50.8
Cpa.g.sc516.2 Carica papaya HOM05D000886 ORTHO05D000525 7.0e-09 63.5 54 53.7
PSO017G2955 Papaver somniferum HOM05D000886 ORTHO05D000525 7.0e-09 63.5 62 51.6
Solyc01g103460.2 Solanum lycopersicum HOM05D000886 ORTHO05D000525 9.1e-09 63.2 59 44.1
Peaxi162Scf00016g00923 Petunia axillaris HOM05D000886 ORTHO05D000525 1.2e-08 62.8 56 51.8
Cc06_g20650 Coffea canephora HOM05D000886 ORTHO05D000525 1.6e-08 62.4 56 51.8
MSTRG.19777 Avicennia marina HOM05D000886 ORTHO05D000525 2.7e-08 61.6 56 51.8
Rhsim04G0069800 Rhododendron simsii HOM05D000886 ORTHO05D000525 3.5e-08 61.2 53 58.5
SGA_v2.0_scaffold66G22305 Striga asiatica HOM05D000886 ORTHO05D000525 3.5e-08 61.2 56 51.8
CANSAT56G3317 Cannabis sativa HOM05D000886 ORTHO05D000525 4.5e-08 60.8 44 56.8
Oeu060771.1 Olea europaea HOM05D000886 ORTHO05D000525 4.5e-08 60.8 56 51.8
Atru.chr1.1368 Acer truncatum HOM05D000886 ORTHO05D000525 5.9e-08 60.5 56 51.8
TAR623G1595 Trochodendron aralioides HOM05D000886 ORTHO05D000525 5.9e-08 60.5 54 53.7
Peaxi162Scf00462g00085 Petunia axillaris HOM05D000886 ORTHO05D000525 7.7e-08 60.1 59 39.0
Peaxi162Scf00975g10015 Petunia axillaris HOM05D000886 ORTHO05D000525 7.7e-08 60.1 56 50.0
TWI53G0597 Tripterygium wilfordii HOM05D000886 ORTHO05D000525 7.7e-08 60.1 58 48.3
HanXRQChr15g0495511 Helianthus annuus HOM05D000886 ORTHO05D000525 1.0e-07 59.7 54 51.9
Nitab4.5_0003694g0040 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.0e-07 59.7 56 50.0
PSO210G3345 Papaver somniferum HOM05D000886 ORTHO05D000525 1.0e-07 59.7 65 52.3
SalBow6G6665 Salvia bowleyana HOM05D000886 ORTHO05D000525 1.0e-07 59.7 60 50.0
SalBow6G7074 Salvia bowleyana HOM05D000886 ORTHO05D000525 1.0e-07 59.7 66 42.4
PGSC0003DMG400024888 Solanum tuberosum HOM05D000886 ORTHO05D000525 1.0e-07 59.7 59 40.7
GSVIVG01025807001 Vitis vinifera HOM05D000886 ORTHO05D000525 1.0e-07 59.7 56 53.6
Migut.J01613 Erythranthe guttata HOM05D000886 ORTHO05D000525 1.3e-07 59.3 56 44.6
Sopen10g028880 Solanum pennellii HOM05D000886 ORTHO05D000525 1.7e-07 58.9 56 46.4
Aqoxy2G02688 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 2.9e-07 58.2 52 55.8
Ca_00967_v3 Cicer arietinum L. HOM05D000886 ORTHO05D000525 2.9e-07 58.2 58 46.6
SEGI_23564 Sequoiadendron giganteum HOM05D000886 ORTHO05D000525 2.9e-07 58.2 52 51.9
Lj2A411T32 Lonicera japonica HOM05D000886 ORTHO05D000525 3.8e-07 57.8 56 46.4
Manes.08G161704 Manihot esculenta HOM05D000886 ORTHO05D000525 3.8e-07 57.8 56 44.6
PGSC0003DMG400043401 Solanum tuberosum HOM05D000886 ORTHO05D000525 3.8e-07 57.8 56 46.4
Eucgr.K01677 Eucalyptus grandis HOM05D000886 ORTHO05D000525 5.0e-07 57.4 57 45.6
FvH4_3g40510 Fragaria vesca HOM05D000886 ORTHO05D000525 5.0e-07 57.4 57 43.9
FAN11G3456 Fragaria x ananassa HOM05D000886 ORTHO05D000525 5.0e-07 57.4 57 43.9
FAN25G0223 Fragaria x ananassa HOM05D000886 ORTHO05D000525 5.0e-07 57.4 57 43.9
Glyma.18G194400 Glycine max HOM05D000886 ORTHO05D000525 5.0e-07 57.4 54 51.9
Lj1g0021355 Lotus japonicus HOM05D000886 ORTHO05D000525 5.0e-07 57.4 54 50.0
Prupe.4G179100 Prunus persica HOM05D000886 ORTHO05D000525 5.0e-07 57.4 55 54.5
Atru.chr1.1145 Acer truncatum HOM05D000886 ORTHO05D000525 6.6e-07 57.0 56 46.4
BcaC09g48242 Brassica carinata HOM05D000886 ORTHO05D000525 6.6e-07 57.0 64 43.8
Ciclev10012747m.g Citrus clementina HOM05D000886 ORTHO05D000525 6.6e-07 57.0 58 50.0
FAN16G2738 Fragaria x ananassa HOM05D000886 ORTHO05D000525 6.6e-07 57.0 57 43.9
Hma1.2p1_1283F.1_g272790 Hydrangea macrophylla HOM05D000886 ORTHO05D000525 6.6e-07 57.0 56 50.0
Lj6g0004950 Lotus japonicus HOM05D000886 ORTHO05D000525 6.6e-07 57.0 46 50.0
TPR.G1540 Trifolium pratense HOM05D000886 ORTHO05D000525 6.6e-07 57.0 54 48.1
Dinv04815 Davidia involucrata HOM05D000886 ORTHO05D000525 8.6e-07 56.6 56 48.2
Lj6P693T55 Lonicera japonica HOM05D000886 ORTHO05D000525 8.6e-07 56.6 64 51.6
Lj8P110T28 Lonicera japonica HOM05D000886 ORTHO05D000525 8.6e-07 56.6 53 47.2
Psat3g135080 Pisum sativum HOM05D000886 ORTHO05D000525 8.6e-07 56.6 57 50.9
C01p52770 Brassica napus HOM05D000886 ORTHO05D000525 1.1e-06 56.2 64 42.2
Os01g0660800 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 1.1e-06 56.2 55 43.6
Peaxi162Scf00069g00011 Petunia axillaris HOM05D000886 ORTHO05D000525 1.1e-06 56.2 59 45.8
Sopen01g045820 Solanum pennellii HOM05D000886 ORTHO05D000525 1.1e-06 56.2 59 40.7
PGSC0003DMG400043674 Solanum tuberosum HOM05D000886 ORTHO05D000525 1.1e-06 56.2 55 43.6
TWI53G0058 Tripterygium wilfordii HOM05D000886 ORTHO05D000525 1.1e-06 56.2 58 46.6
TAR623G1664 Trochodendron aralioides HOM05D000886 ORTHO05D000525 1.1e-06 56.2 56 44.6
BcaB04g21078 Brassica carinata HOM05D000886 ORTHO05D000525 1.5e-06 55.8 63 42.9
Migut.K00159 Erythranthe guttata HOM05D000886 ORTHO05D000525 1.5e-06 55.8 58 44.8
Hma1.2p1_0662F.1_g198230 Hydrangea macrophylla HOM05D000886 ORTHO05D000525 1.5e-06 55.8 56 50.0
Nitab4.5_0003544g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.5e-06 55.8 54 50.0
Sed0011417 Sechium edule HOM05D000886 ORTHO05D000525 1.5e-06 55.8 56 44.6
HPP92_008929 Vanilla planifolia HOM05D000886 ORTHO05D000525 1.5e-06 55.8 54 48.1
Thhalv10022087m.g Eutrema salsugineum HOM05D000886 ORTHO05D000525 1.9e-06 55.5 56 44.6
Lj3P844T47 Lonicera japonica HOM05D000886 ORTHO05D000525 1.9e-06 55.5 49 51.0
Nitab4.5_0000787g0060 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.9e-06 55.5 57 42.1
Nitab4.5_0005169g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.9e-06 55.5 59 42.4
Oeu064751.1 Olea europaea HOM05D000886 ORTHO05D000525 1.9e-06 55.5 56 48.2
Oeu064752.1 Olea europaea HOM05D000886 ORTHO05D000525 1.9e-06 55.5 56 48.2
Os07g0112300 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 1.9e-06 55.5 58 51.7
PSO782G0468 Papaver somniferum HOM05D000886 ORTHO05D000525 1.9e-06 55.5 54 46.3
Rhsim04G0117500 Rhododendron simsii HOM05D000886 ORTHO05D000525 1.9e-06 55.5 56 50.0
Solyc10g078200.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 1.9e-06 55.5 52 48.1
BolC1t05215H Brassica oleracea HOM05D000886 ORTHO05D000525 2.5e-06 55.1 63 42.9
Ca_09164_v3 Cicer arietinum L. HOM05D000886 ORTHO05D000525 2.5e-06 55.1 56 42.9
Dinv03445 Davidia involucrata HOM05D000886 ORTHO05D000525 2.5e-06 55.1 56 48.2
HanXRQChr15g0495501 Helianthus annuus HOM05D000886 ORTHO05D000525 2.5e-06 55.1 49 53.1
Manes.08G161900 Manihot esculenta HOM05D000886 ORTHO05D000525 2.5e-06 55.1 45 51.1
QL07p013665 Quercus lobata HOM05D000886 ORTHO05D000525 2.5e-06 55.1 51 51.0
VMungo0464G0812 Vigna mungo HOM05D000886 ORTHO05D000525 2.5e-06 55.1 41 56.1
Nn7g36495 Nelumbo nucifera HOM05D000886 ORTHO05D000525 3.3e-06 54.7 54 46.3
Nitab4.5_0000699g0130 Nicotiana tabacum HOM05D000886 ORTHO05D000525 3.3e-06 54.7 54 48.1
Psat3g135440 Pisum sativum HOM05D000886 ORTHO05D000525 3.3e-06 54.7 56 42.9
Rhsim04G0117600 Rhododendron simsii HOM05D000886 ORTHO05D000525 3.3e-06 54.7 56 48.2
SalBow6G4799 Salvia bowleyana HOM05D000886 ORTHO05D000525 3.3e-06 54.7 59 47.5
EL10Ac3g07294 Beta vulgaris HOM05D000886 ORTHO05D000525 4.2e-06 54.3 51 52.9
CANSAT56G2559 Cannabis sativa HOM05D000886 ORTHO05D000525 4.2e-06 54.3 54 48.1
AUR62018411 Chenopodium quinoa HOM05D000886 ORTHO05D000525 4.2e-06 54.3 56 48.2
AUR62021032 Chenopodium quinoa HOM05D000886 ORTHO05D000525 4.2e-06 54.3 56 48.2
CsaV3_3G040060 Cucumis sativus L. HOM05D000886 ORTHO05D000525 4.2e-06 54.3 56 42.9
Dinv09707 Davidia involucrata HOM05D000886 ORTHO05D000525 4.2e-06 54.3 55 47.3
ECA232G0102 Erigeron canadensis HOM05D000886 ORTHO05D000525 4.2e-06 54.3 58 46.6
Migut.I00460 Erythranthe guttata HOM05D000886 ORTHO05D000525 4.2e-06 54.3 57 43.9
Os07g0112400 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 4.2e-06 54.3 54 46.3
Peaxi162Scf00877g00007 Petunia axillaris HOM05D000886 ORTHO05D000525 4.2e-06 54.3 55 38.2
Aqoxy2G02689 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 5.5e-06 53.9 52 46.2
CANSAT56G3075 Cannabis sativa HOM05D000886 ORTHO05D000525 5.5e-06 53.9 54 46.3
CiPaw.15G108300 Carya illinoinensis HOM05D000886 ORTHO05D000525 5.5e-06 53.9 66 45.5
ECA232G4885 Erigeron canadensis HOM05D000886 ORTHO05D000525 5.5e-06 53.9 54 48.1
Lalb_Chr03g0042881 Lupinus albus HOM05D000886 ORTHO05D000525 5.5e-06 53.9 55 49.1
Peaxi162Scf00011g01434 Petunia axillaris HOM05D000886 ORTHO05D000525 5.5e-06 53.9 57 36.8
Phvul.006G119400 Phaseolus vulgaris HOM05D000886 ORTHO05D000525 5.5e-06 53.9 58 44.8
RcHm_v2.0_Chr5g0073181 Rosa chinensis HOM05D000886 ORTHO05D000525 5.5e-06 53.9 56 42.9
SGA_v2.0_scaffold240G44131 Striga asiatica HOM05D000886 ORTHO05D000525 5.5e-06 53.9 56 50.0
Aqoxy2G02679 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 7.2e-06 53.5 54 46.3
Glyma.07G143700 Glycine max HOM05D000886 ORTHO05D000525 7.2e-06 53.5 54 46.3
HanXRQChr09g0253651 Helianthus annuus HOM05D000886 ORTHO05D000525 7.2e-06 53.5 54 44.4
Oeu064753.1 Olea europaea HOM05D000886 ORTHO05D000525 7.2e-06 53.5 59 47.5
Solyc12g042390.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 7.2e-06 53.5 56 46.4
TPR.G33857 Trifolium pratense HOM05D000886 ORTHO05D000525 7.2e-06 53.5 60 43.3
Ah.13g077260 Amaranthus hybridus HOM05D000886 ORTHO05D000525 9.5e-06 53.1 54 48.1
EL10Ac3g07298 Beta vulgaris HOM05D000886 ORTHO05D000525 9.5e-06 53.1 54 50.0
MELO3C009746.2 Cucumis melo HOM05D000886 ORTHO05D000525 9.5e-06 53.1 56 41.1
Glyma.15G138600 Glycine max HOM05D000886 ORTHO05D000525 9.5e-06 53.1 61 42.6
HanXRQChr15g0495481 Helianthus annuus HOM05D000886 ORTHO05D000525 9.5e-06 53.1 54 48.1
Sopen12g021370 Solanum pennellii HOM05D000886 ORTHO05D000525 9.5e-06 53.1 56 46.4


User provided reference genes

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