Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.7e-120 436.0 221 100.0
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.6e-86 323.2 179 89.9
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 4.6e-86 321.6 179 89.9
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.6e-86 321.6 179 88.8
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 7.9e-86 320.9 179 89.4
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.0e-85 320.5 179 88.8
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.3e-85 320.1 179 88.3
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.3e-85 320.1 179 88.8
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.8e-85 319.7 179 88.3
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 3.3e-84 315.5 179 88.3
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 4.3e-84 315.1 179 87.7
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 4.3e-84 315.1 179 86.6
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 5.7e-84 314.7 179 88.3
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.3e-83 313.5 178 86.5
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.2e-83 312.8 179 86.6
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 2.2e-83 312.8 179 84.9
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 2.8e-83 312.4 179 87.2
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 3.7e-83 312.0 179 86.0
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 4.8e-83 311.6 179 87.2
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 6.3e-83 311.2 179 85.5
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 6.3e-83 311.2 179 86.0
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 8.2e-83 310.8 179 86.6
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.1e-82 310.5 179 86.0
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.1e-82 310.5 179 84.4
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.8e-82 309.7 179 86.0
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.8e-82 309.7 179 86.6
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.8e-82 309.7 179 84.9
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 2.4e-82 309.3 180 85.0
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.1e-82 308.9 179 86.0
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.1e-82 308.9 179 84.4
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 4.1e-82 308.5 179 86.0
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 5.3e-82 308.1 179 84.9
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 9.0e-82 307.4 180 83.9
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.2e-81 307.0 179 83.2
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.2e-81 307.0 179 83.8
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 1.5e-81 306.6 179 83.8
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 1.5e-81 306.6 179 83.8
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.0e-81 306.2 179 85.5
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 2.0e-81 306.2 179 85.5
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 2.6e-81 305.8 179 83.8
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.6e-81 305.8 179 83.8
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 2.6e-81 305.8 178 86.5
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 2.6e-81 305.8 179 84.9
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 3.4e-81 305.4 179 86.0
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.4e-81 305.4 179 83.8
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 4.5e-81 305.1 179 82.7
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 7.7e-81 304.3 179 83.8
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.0e-80 303.9 180 85.6
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 1.0e-80 303.9 181 86.2
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.3e-80 303.5 189 82.0
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.3e-80 303.5 179 83.8
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 1.3e-80 303.5 179 83.8
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.3e-80 303.5 179 86.0
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.3e-80 303.5 179 83.8
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.7e-80 303.1 179 82.1
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.7e-80 303.1 179 82.1
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 1.7e-80 303.1 179 82.1
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.7e-80 303.1 179 83.2
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.2e-80 302.8 179 84.4
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.2e-80 302.8 179 82.7
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 2.2e-80 302.8 177 84.7
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 2.9e-80 302.4 179 81.6
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.9e-80 302.4 179 83.2
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 5.0e-80 301.6 177 84.2
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 5.0e-80 301.6 176 85.8
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 6.5e-80 301.2 179 83.2
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 6.5e-80 301.2 179 81.0
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 6.5e-80 301.2 177 83.1
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 6.5e-80 301.2 179 84.9
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.1e-79 300.4 181 80.7
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.1e-79 300.4 182 83.0
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.9e-79 299.7 193 78.8
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.5e-79 299.3 182 85.2
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 3.2e-79 298.9 179 83.2
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.2e-79 298.5 180 82.2
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 5.5e-79 298.1 179 80.4
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 5.5e-79 298.1 183 82.0
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 7.2e-79 297.7 180 79.4
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 7.2e-79 297.7 176 85.2
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 9.4e-79 297.4 179 79.9
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 9.4e-79 297.4 178 80.3
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.2e-78 297.0 184 77.7
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.2e-78 297.0 180 82.2
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.6e-78 296.6 179 78.8
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.6e-78 296.6 180 82.8
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.1e-78 296.2 179 82.1
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 2.1e-78 296.2 179 81.0
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 2.7e-78 295.8 176 84.1
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 7.9e-78 294.3 178 82.0
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.8e-77 293.1 179 82.1
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.8e-77 293.1 178 80.3
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 1.8e-77 293.1 198 73.7
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 2.3e-77 292.7 178 80.3
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 2.3e-77 292.7 177 82.5
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.3e-77 292.7 179 81.0
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 3.0e-77 292.4 177 81.9
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 3.9e-77 292.0 182 80.2
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 3.9e-77 292.0 198 73.2
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.6e-76 289.3 180 78.9
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 3.3e-76 288.9 180 81.1
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 3.3e-76 288.9 182 75.8
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 3.3e-76 288.9 177 82.5
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 7.4e-76 287.7 177 80.8
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.3e-75 287.0 182 79.1
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.8e-75 285.8 179 78.2
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 4.8e-75 285.0 182 78.0
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.4e-74 283.5 180 78.3
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.4e-74 283.5 181 79.0
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 1.8e-74 283.1 182 79.1
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 2.4e-74 282.7 182 76.9
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.1e-74 282.3 179 79.9
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 4.1e-74 282.0 189 74.6
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 5.3e-74 281.6 232 65.1
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 3.4e-73 278.9 178 75.8
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.0e-72 277.3 178 75.8
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 2.5e-71 272.7 176 75.0
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 1.6e-70 270.0 177 75.7
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 6.1e-70 268.1 167 82.0
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 5.2e-69 265.0 166 83.1
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.4e-68 261.9 163 85.9
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 3.7e-67 258.8 198 66.2
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.2e-65 253.8 159 81.8
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 8.5e-64 247.7 179 70.4
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 9.4e-63 244.2 175 67.4
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 1.6e-62 243.4 181 70.7
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.6e-62 243.4 181 71.8
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 6.1e-62 241.5 138 85.5
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.4e-61 240.4 177 65.5
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 2.6e-60 236.1 161 77.0
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 4.4e-60 235.3 179 69.8
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 7.5e-60 234.6 138 84.1
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.7e-59 233.4 179 67.6
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 2.2e-59 233.0 181 64.6
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.1e-58 230.7 175 68.6
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 3.1e-58 229.2 176 63.1
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 2.7e-57 226.1 139 82.0
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 6.8e-53 211.5 165 67.9
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.2e-52 210.7 169 61.5
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 2.6e-52 209.5 172 64.5
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.6e-52 209.5 119 84.9
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.7e-43 180.3 96 88.5
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 8.3e-43 177.9 107 79.4
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 2.3e-40 169.9 174 49.4
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.8e-40 169.1 119 74.8
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 5.7e-36 155.2 189 50.8
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 7.8e-33 144.8 82 89.0
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 7.5e-28 128.3 63 92.1
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.4e-26 124.0 83 74.7
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 6.8e-21 105.1 71 76.1
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 7.1e-18 95.1 66 77.3
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.3e-13 80.1 39 87.2
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.2e-09 67.8 31 87.1
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.7e-09 66.6 31 83.9


User provided reference genes

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