Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 3.9e-246 854.4 437 100.0
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 3.8e-172 608.6 428 75.7
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 5.6e-168 594.7 431 74.0
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 8.4e-164 580.9 423 73.3
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 5.3e-158 561.6 414 73.2
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.5e-157 560.1 428 70.3
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 3.4e-157 558.9 429 71.6
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 1.4e-155 553.5 428 69.6
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 2.4e-155 552.7 432 70.4
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 1.2e-154 550.4 425 68.9
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 1.8e-153 546.6 432 69.4
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 3.3e-152 542.3 432 68.8
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 2.8e-151 539.3 428 69.4
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 1.8e-150 536.6 430 68.6
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 1.8e-150 536.6 432 69.0
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 9.0e-150 534.3 432 68.3
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.5e-149 533.5 431 68.4
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.2e-148 529.6 432 67.8
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.9e-148 529.3 432 66.7
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 6.4e-148 528.1 430 68.1
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 8.4e-148 527.7 433 67.9
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.1e-147 527.3 426 67.1
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.1e-147 527.3 433 66.1
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 3.2e-147 525.8 432 68.1
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 3.2e-147 525.8 431 67.5
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 2.1e-146 523.1 431 68.9
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 5.1e-145 518.5 427 67.9
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 1.9e-144 516.5 435 67.4
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 2.5e-144 516.2 432 67.4
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 7.4e-144 514.6 435 66.7
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 1.3e-143 513.8 434 65.4
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 1.6e-143 513.5 432 66.9
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 2.8e-143 512.7 433 65.8
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 8.2e-143 511.1 433 64.4
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.1e-142 510.8 433 64.2
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.0e-141 506.5 433 66.3
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 8.4e-140 501.1 424 63.7
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.9e-139 500.0 440 62.5
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 4.2e-139 498.8 424 64.2
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 9.3e-139 497.7 427 64.9
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.3e-137 493.8 431 64.7
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 2.5e-136 489.6 430 63.3
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 2.5e-136 489.6 430 64.2
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 1.6e-135 486.9 519 57.2
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 4.8e-135 485.3 424 62.3
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.1e-134 484.2 424 62.3
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 1.4e-134 483.8 433 64.2
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 1.8e-134 483.4 478 57.9
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 3.1e-134 482.6 432 64.4
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 5.9e-133 478.4 427 64.9
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 7.7e-133 478.0 428 61.7
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.2e-132 476.5 408 64.0
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.2e-132 476.5 424 61.8
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 2.5e-131 473.0 432 60.6
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 3.2e-131 472.6 430 63.0
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 3.2e-131 472.6 408 63.5
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 4.2e-131 472.2 433 62.4
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 9.4e-131 471.1 429 60.4
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 9.4e-131 471.1 433 61.9
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 3.9e-129 465.7 433 61.9
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 5.1e-129 465.3 408 62.7
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 7.4e-128 461.5 439 62.4
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 1.7e-127 460.3 424 63.0
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 3.7e-127 459.1 430 62.3
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 8.2e-127 458.0 430 62.1
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.1e-126 457.6 439 58.5
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 1.4e-126 457.2 435 63.0
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 3.1e-126 456.1 431 61.9
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 4.1e-126 455.7 431 59.6
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 2.0e-125 453.4 431 59.6
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 7.7e-125 451.4 426 60.3
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 2.2e-124 449.9 414 61.6
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 8.5e-124 448.0 436 61.0
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 1.9e-123 446.8 486 56.8
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.6e-122 443.7 392 62.5
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 2.1e-122 443.4 438 59.8
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 4.4e-120 435.6 435 59.3
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 4.4e-120 435.6 363 66.4
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 5.7e-120 435.3 438 56.2
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 2.8e-119 433.0 419 60.4
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 1.1e-118 431.0 428 60.5
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 2.4e-118 429.9 414 59.7
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 3.1e-118 429.5 347 68.9
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 4.5e-117 425.6 433 56.4
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 7.7e-117 424.9 434 58.3
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 7.7e-117 424.9 362 61.3
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 2.2e-116 423.3 436 56.7
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.9e-115 420.2 434 57.6
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 3.2e-115 419.5 423 59.3
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 3.2e-115 419.5 444 56.5
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 5.5e-115 418.7 439 57.9
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 7.2e-115 418.3 543 49.0
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 2.7e-114 416.4 441 57.6
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 2.7e-114 416.4 436 56.9
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 4.7e-114 415.6 434 56.9
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 7.4e-112 408.3 412 57.0
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 9.7e-112 407.9 411 58.4
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 9.7e-112 407.9 411 58.4
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.3e-111 407.5 393 58.8
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 2.2e-111 406.8 412 56.8
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 4.8e-111 405.6 411 58.2
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.1e-110 404.4 348 64.9
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.2e-109 401.0 384 59.6
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 2.0e-109 400.2 424 55.7
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.5e-107 394.0 413 57.1
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 6.1e-106 388.7 415 55.9
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 3.0e-105 386.3 437 53.3
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 9.7e-104 381.3 373 58.2
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 4.8e-103 379.0 430 52.6
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.1e-102 377.9 424 52.6
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.5e-99 367.5 427 54.3
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 3.0e-97 359.8 429 52.7
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 3.9e-84 316.2 458 45.4
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 5.0e-84 315.8 318 61.3
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.0e-80 303.9 357 48.7
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.3e-79 301.2 365 50.4
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 8.1e-74 282.0 425 43.5
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.2e-72 278.1 376 46.3
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 4.6e-53 213.0 257 45.1
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 6.4e-47 192.6 354 42.4
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 8.1e-42 175.6 426 34.5
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 7.6e-40 169.1 219 47.9
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 1.3e-18 98.6 171 33.9
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 2.2e-15 87.8 220 30.9
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 5.0e-15 86.7 196 31.1
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.6e-13 81.6 110 48.2
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.7e-13 80.9 172 34.3
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 4.6e-13 80.1 152 39.5
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 6.1e-13 79.7 64 62.5
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 2.0e-11 74.7 67 59.7
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 2.0e-11 74.7 70 60.0
TAR633G2245 Trochodendron aralioides HOM05D005604 ORTHO05D006745 2.8e-10 70.9 72 59.7
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 3.2e-06 57.4 50 58.0


User provided reference genes

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