Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 4.6e-193 677.9 399 100.0
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.9e-107 392.5 398 68.1
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.9e-107 392.5 398 68.1
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.1e-72 278.1 483 44.7
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 3.9e-67 259.6 401 45.9
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 2.4e-64 250.4 415 42.2
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 2.4e-64 250.4 405 42.7
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 3.2e-61 240.0 453 44.2
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 6.0e-60 235.7 411 52.1
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 7.9e-60 235.3 410 41.7
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 1.0e-59 235.0 438 45.9
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 3.9e-59 233.0 428 43.9
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 3.9e-59 233.0 410 41.2
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 1.9e-58 230.7 461 42.7
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 3.3e-58 229.9 443 46.0
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 3.1e-56 223.4 414 40.1
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 2.6e-55 220.3 426 43.7
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 3.4e-55 219.9 353 41.4
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 5.9e-55 219.2 435 41.6
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 3.2e-53 213.4 404 43.3
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 5.5e-53 212.6 462 40.7
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.0e-51 208.4 434 41.7
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.3e-51 208.0 434 40.8
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.8e-51 207.6 432 41.7
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 3.0e-51 206.8 425 47.3
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 1.1e-50 204.9 410 44.1
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.9e-50 204.1 415 46.7
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 2.2e-49 200.7 384 42.7
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 8.2e-49 198.7 424 39.6
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 3.1e-48 196.8 439 39.9
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.6e-47 193.7 406 45.1
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 3.8e-46 189.9 463 39.1
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 1.1e-45 188.3 457 42.2
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 3.2e-45 186.8 405 37.0
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 7.2e-45 185.7 386 38.9
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 1.0e-43 181.8 371 34.2
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 1.8e-43 181.0 441 46.3
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 8.8e-43 178.7 428 43.9
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 1.5e-42 177.9 409 38.9
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 3.3e-42 176.8 422 38.4
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 1.7e-41 174.5 442 36.4
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.7e-41 174.5 435 39.5
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 8.2e-41 172.2 437 39.1
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 8.2e-41 172.2 437 39.1
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 1.4e-40 171.4 435 35.2
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.4e-40 171.4 418 36.4
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 5.3e-40 169.5 462 32.5
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 1.3e-38 164.9 480 33.5
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 3.8e-38 163.3 342 36.8
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.9e-37 161.0 344 37.2
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 5.5e-37 159.5 375 37.1
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 7.2e-37 159.1 518 35.5
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 9.4e-37 158.7 185 57.8
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 2.7e-36 157.1 517 36.0
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 4.7e-36 156.4 340 36.5
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.3e-35 154.1 437 40.3
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 3.0e-35 153.7 352 39.2
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 5.1e-35 152.9 354 40.4
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 1.1e-34 151.8 349 38.4
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 5.7e-34 149.4 199 49.7
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.7e-33 147.9 405 40.2
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.2e-33 147.5 435 40.2
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 2.2e-33 147.5 416 35.1
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 4.1e-32 143.3 432 33.6
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 4.1e-32 143.3 326 39.9
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 4.1e-32 143.3 230 51.7
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 4.1e-32 143.3 155 49.0
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 5.3e-32 142.9 432 33.6
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 5.3e-32 142.9 432 33.6
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 5.3e-32 142.9 405 39.0
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.2e-31 141.7 396 32.6
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 2.6e-31 140.6 344 39.8
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 1.0e-30 138.7 188 55.9
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 1.0e-30 138.7 193 49.7
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.3e-30 138.3 432 33.3
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 2.2e-30 137.5 433 31.9
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 2.2e-30 137.5 291 41.6
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 5.0e-30 136.3 315 36.2
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 6.5e-30 136.0 228 43.0
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.1e-29 135.2 136 55.1
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.5e-29 134.8 325 37.8
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.9e-29 134.4 395 36.7
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 3.2e-29 133.7 231 49.8
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 3.2e-29 133.7 236 40.3
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 5.5e-29 132.9 229 49.3
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 7.2e-29 132.5 221 50.2
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 7.2e-29 132.5 221 50.2
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 9.4e-29 132.1 430 35.3
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 8.0e-28 129.0 439 37.1
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 1.4e-27 128.3 144 62.5
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 2.3e-27 127.5 220 39.5
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.3e-27 127.5 389 32.9
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 4.0e-27 126.7 429 38.5
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 8.8e-27 125.6 233 43.8
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 8.8e-27 125.6 160 60.0
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 2.0e-26 124.4 355 34.9
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 2.0e-26 124.4 177 45.8
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.6e-26 124.0 389 35.7
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 2.6e-26 124.0 456 40.1
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 3.3e-26 123.6 117 72.6
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 4.4e-26 123.2 324 34.9
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 9.7e-26 122.1 412 35.2
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 2.2e-25 120.9 129 62.0
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 6.3e-25 119.4 414 32.9
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 6.3e-25 119.4 436 36.5
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 6.3e-25 119.4 124 50.8
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 3.1e-24 117.1 299 37.5
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 7.0e-24 115.9 337 36.8
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 7.0e-24 115.9 126 50.0
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 9.1e-24 115.5 150 52.7
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 9.1e-24 115.5 122 54.1
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 1.2e-23 115.2 360 35.0
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.6e-23 114.8 312 34.9
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 1.6e-23 114.8 382 33.5
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 1.3e-22 111.7 122 58.2
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 2.2e-22 110.9 127 53.5
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.1e-21 108.6 122 51.6
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 2.1e-20 104.4 125 49.6
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 8.0e-20 102.4 121 55.4
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 1.2e-18 98.6 154 46.1
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 3.4e-18 97.1 168 41.7
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 4.8e-17 93.2 382 28.8
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 6.5e-14 82.8 46 78.3
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 1.2e-12 78.6 120 49.2
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 1.4e-11 75.1 198 42.4
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 2.3e-11 74.3 251 31.9
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 8.8e-11 72.4 357 31.1
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 1.7e-09 68.2 152 46.7
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 3.7e-09 67.0 141 41.1
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 3.7e-09 67.0 165 32.7
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 4.9e-09 66.6 149 37.6
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 4.9e-09 66.6 162 35.2
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.8e-08 64.7 159 35.8
CDE05G3071 Ceratophyllum demersum HOM05D000186 ORTHO05D002329 5.9e-07 59.7 110 35.5
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 2.3e-06 57.8 123 42.3


User provided reference genes

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