Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 6.4e-26 120.2 69 100.0
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 2.4e-17 91.7 68 79.4
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 5.4e-17 90.5 69 75.4
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 7.1e-17 90.1 67 79.1
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 2.7e-16 88.2 69 81.2
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 1.3e-15 85.9 68 76.5
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 3.0e-15 84.7 68 73.5
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 3.0e-15 84.7 63 77.8
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 3.9e-15 84.3 69 72.5
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 3.9e-15 84.3 69 76.8
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 5.1e-15 84.0 57 82.5
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 5.1e-15 84.0 64 78.1
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 6.6e-15 83.6 61 80.3
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 1.1e-14 82.8 64 78.1
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 1.5e-14 82.4 65 73.8
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 1.9e-14 82.0 69 72.5
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 1.9e-14 82.0 67 76.1
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 4.3e-14 80.9 64 76.6
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 9.6e-14 79.7 68 69.1
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 9.6e-14 79.7 68 69.1
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 1.3e-13 79.3 49 87.8
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 1.3e-13 79.3 48 89.6
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 1.3e-13 79.3 54 81.5
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 2.1e-13 78.6 57 75.4
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 2.1e-13 78.6 67 68.7
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 2.8e-13 78.2 69 73.9
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 2.8e-13 78.2 69 71.0
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 8.1e-13 76.6 65 75.4
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 8.1e-13 76.6 70 71.4
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 1.1e-12 76.3 47 87.2
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 1.4e-12 75.9 57 80.7
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 1.4e-12 75.9 67 73.1
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 1.4e-12 75.9 70 72.9
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 1.8e-12 75.5 69 69.6
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 2.4e-12 75.1 48 85.4
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 2.4e-12 75.1 68 70.6
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 4.0e-12 74.3 70 68.6
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 6.9e-12 73.6 48 87.5
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 9.0e-12 73.2 67 67.2
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 9.0e-12 73.2 69 69.6
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 9.0e-12 73.2 64 73.4
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 1.2e-11 72.8 65 70.8
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 1.2e-11 72.8 51 80.4
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 1.5e-11 72.4 55 78.2
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 1.5e-11 72.4 55 78.2
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.0e-11 72.0 48 85.4
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 2.0e-11 72.0 48 85.4
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 2.0e-11 72.0 69 68.1
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 2.0e-11 72.0 70 70.0
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 2.6e-11 71.6 59 74.6
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 2.6e-11 71.6 67 67.2
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.6e-11 71.6 50 82.0
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 2.6e-11 71.6 57 75.4
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 3.4e-11 71.2 48 81.2
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 4.5e-11 70.9 48 85.4
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 5.8e-11 70.5 66 72.7
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 5.8e-11 70.5 44 86.4
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 5.8e-11 70.5 47 80.9
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 5.8e-11 70.5 49 81.6
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 5.8e-11 70.5 49 81.6
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 9.9e-11 69.7 67 65.7
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 9.9e-11 69.7 58 72.4
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 9.9e-11 69.7 48 85.4
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 9.9e-11 69.7 58 72.4
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 9.9e-11 69.7 69 63.8
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 1.3e-10 69.3 47 80.9
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 1.3e-10 69.3 47 80.9
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 1.3e-10 69.3 47 80.9
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 1.3e-10 69.3 61 72.1
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 1.3e-10 69.3 51 80.4
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 1.3e-10 69.3 58 72.4
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.3e-10 69.3 63 69.8
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.7e-10 68.9 47 78.7
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 1.7e-10 68.9 47 85.1
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.7e-10 68.9 53 77.4
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 1.7e-10 68.9 66 71.2
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 1.7e-10 68.9 54 75.9
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 2.2e-10 68.6 56 75.0
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 2.9e-10 68.2 58 72.4
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 4.9e-10 67.4 69 68.1
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 4.9e-10 67.4 48 81.2
THA.LOC104804811 Tarenaya hassleriana HOM05D005458 ORTHO05D005672 4.9e-10 67.4 69 63.8
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 6.4e-10 67.0 65 67.7
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 6.4e-10 67.0 69 66.7
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 6.4e-10 67.0 56 76.8
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 8.4e-10 66.6 66 66.7
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 8.4e-10 66.6 63 68.3
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 1.1e-09 66.2 69 63.8
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.4e-09 65.9 69 65.2
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 1.9e-09 65.5 44 81.8
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 1.9e-09 65.5 44 81.8
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 1.9e-09 65.5 64 65.6
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 2.4e-09 65.1 47 85.1
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.4e-09 65.1 52 71.2
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 5.4e-09 63.9 66 62.1
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 7.1e-09 63.5 46 84.8
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 7.1e-09 63.5 45 84.4
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 9.3e-09 63.2 51 74.5
MD05G1174200 Malus domestica HOM05D005458 ORTHO05D005672 9.3e-09 63.2 64 64.1
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.2e-08 62.8 70 62.9
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 1.2e-08 62.8 62 66.1
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 1.6e-08 62.4 42 81.0
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 2.1e-08 62.0 52 73.1
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 2.7e-08 61.6 61 65.6
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 3.5e-08 61.2 62 66.1
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 4.6e-08 60.8 63 65.1
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 7.9e-08 60.1 64 60.9
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 1.0e-07 59.7 60 70.0
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 1.3e-07 59.3 64 60.9
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 1.3e-07 59.3 42 81.0
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 1.3e-07 59.3 70 60.0
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 1.3e-07 59.3 59 67.8
C08p07830 Brassica napus HOM05D005458 ORTHO05D005672 2.3e-07 58.5 41 78.0
BolC8t47637H Brassica oleracea HOM05D005458 ORTHO05D005672 2.3e-07 58.5 41 78.0
CSS0011220 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 2.3e-07 58.5 69 60.9
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 3.9e-07 57.8 41 82.9
Migut.N00389 Erythranthe guttata HOM05D005458 ORTHO05D005672 3.9e-07 57.8 67 59.7
Actinidia39967 Actinidia chinensis HOM05D005458 ORTHO05D005672 5.1e-07 57.4 67 59.7
BcaC07g37341 Brassica carinata HOM05D005458 ORTHO05D005672 6.7e-07 57.0 40 77.5
Zm00001eb356280 Zea mays HOM05D005458 ORTHO05D005672 8.7e-07 56.6 43 76.7
Ah.05g178960 Amaranthus hybridus HOM05D005458 ORTHO05D005672 1.1e-06 56.2 43 76.7
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 1.5e-06 55.8 68 60.3
Nn3g20031 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.9e-06 55.5 33 97.0
Os11g0425600 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 1.9e-06 55.5 43 76.7
ClCG09G008920 Citrullus lanatus HOM05D001590 ORTHO05D005672 2.5e-06 55.1 57 63.2
Hma1.2p1_0187F.1_g082170 Hydrangea macrophylla HOM05D005458 ORTHO05D005672 2.5e-06 55.1 46 76.1
CSS0011663 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 4.3e-06 54.3 63 61.9
Aa31LG8G10780 Aethionema arabicum HOM05D005458 ORTHO05D005672 5.6e-06 53.9 65 55.4
Gohir.A07G200800 Gossypium hirsutum HOM05D005458 ORTHO05D005672 5.6e-06 53.9 48 66.7
AL8G12500 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 7.4e-06 53.5 52 61.5
Carub.0007s2892 Capsella rubella HOM05D005458 ORTHO05D005672 7.4e-06 53.5 35 82.9
Cre06.g278238 Chlamydomonas reinhardtii HOM05D005458 ORTHO05D005672 7.4e-06 53.5 55 63.6


User provided reference genes

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