Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07843 Nelumbo nucifera HOM05D006411 ORTHO05D007563 3.8e-199 698.0 350 100.0
Nn3g20757 Nelumbo nucifera HOM05D006411 ORTHO05D007563 3.7e-114 415.6 224 90.6
Nn2g15361 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.3e-87 327.4 172 93.0
TAR371G0942 Trochodendron aralioides HOM05D006411 ORTHO05D007563 1.4e-84 317.4 248 69.0
Prupe.1G216800 Prunus persica HOM05D006411 ORTHO05D007563 1.5e-83 313.9 250 62.0
GSVIVG01004943001 Vitis vinifera HOM05D006411 ORTHO05D007563 6.4e-82 308.5 247 65.2
TWI18G1006 Tripterygium wilfordii HOM05D006411 ORTHO05D007563 1.1e-81 307.8 247 63.6
QL03p049668 Quercus lobata HOM05D006411 ORTHO05D007563 1.2e-80 304.3 251 61.8
Haze_12492 Corylus avellana HOM05D006411 ORTHO05D007563 2.1e-80 303.5 246 62.2
Cfa009441 Carpinus fangiana HOM05D006411 ORTHO05D007563 3.0e-79 299.7 244 61.5
Duzib132G0393 Durio zibethinus HOM05D006411 ORTHO05D007563 3.0e-79 299.7 248 61.3
MD16G1129800 Malus domestica HOM05D006411 ORTHO05D007563 6.7e-79 298.5 251 61.4
MD13G1129600 Malus domestica HOM05D006411 ORTHO05D007563 2.5e-78 296.6 251 61.4
Dinv09212 Davidia involucrata HOM05D006411 ORTHO05D007563 1.3e-77 294.3 241 63.9
FvH4_4g22791 Fragaria vesca HOM05D006411 ORTHO05D007563 1.3e-77 294.3 244 59.4
RcHm_v2.0_Chr4g0429021 Rosa chinensis HOM05D006411 ORTHO05D007563 6.2e-77 292.0 244 59.8
FAN17G2521 Fragaria x ananassa HOM05D006411 ORTHO05D007563 8.1e-77 291.6 244 59.0
Nn3g17917 Nelumbo nucifera HOM05D006411 ORTHO05D007563 8.1e-77 291.6 194 75.3
Atru.chr12.1401 Acer truncatum HOM05D006411 ORTHO05D007563 6.9e-76 288.5 246 62.6
FAN12G0338 Fragaria x ananassa HOM05D002780 ORTHO05D003254 2.6e-75 286.6 241 58.5
Actinidia09598 Actinidia chinensis HOM05D006411 ORTHO05D007563 7.6e-75 285.0 252 59.5
Aqoxy5G03164 Aquilegia oxysepala HOM05D006411 ORTHO05D007563 1.7e-74 283.9 218 65.1
Thecc.02G193900 Theobroma cacao HOM05D006411 ORTHO05D007563 4.9e-74 282.3 211 66.8
Sabra03G0118900 Salix brachista HOM05D006411 ORTHO05D007563 1.9e-73 280.4 252 57.9
Lsat_1_v5_gn_2_17720 Lactuca sativa HOM05D006411 ORTHO05D007563 2.5e-73 280.0 247 57.9
CSS0035608 Camellia sinensis var. sinensis HOM05D006411 ORTHO05D007563 5.5e-73 278.9 253 60.1
Manes.09G187200 Manihot esculenta HOM05D006411 ORTHO05D007563 5.5e-73 278.9 225 63.1
CsaV3_6G007790 Cucumis sativus L. HOM05D006411 ORTHO05D007563 1.2e-72 277.7 246 56.9
Oeu044509.2 Olea europaea HOM05D006411 ORTHO05D007563 1.6e-72 277.3 249 58.6
Solyc12g016210.2 Solanum lycopersicum HOM05D006411 ORTHO05D007563 1.6e-72 277.3 228 61.0
Sopen12g008000 Solanum pennellii HOM05D006411 ORTHO05D007563 4.6e-72 275.8 228 61.4
PSO765G0094 Papaver somniferum HOM05D006411 ORTHO05D007563 1.3e-71 274.2 281 56.2
PSO349G0017 Papaver somniferum HOM05D006411 ORTHO05D007563 1.8e-71 273.9 279 54.5
Gohir.A01G141100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 2.3e-71 273.5 250 60.4
Gorai.002G163700 Gossypium raimondii HOM05D006411 ORTHO05D007563 1.1e-70 271.2 246 61.0
RhsimUnG0101400 Rhododendron simsii HOM05D006411 ORTHO05D007563 1.9e-70 270.4 215 65.1
CANSAT01G2250 Cannabis sativa HOM05D006411 ORTHO05D007563 5.6e-70 268.9 255 56.9
Sed0009782 Sechium edule HOM05D006411 ORTHO05D007563 9.6e-70 268.1 246 56.5
CAN.G529.4 Capsicum annuum HOM05D006411 ORTHO05D007563 1.6e-69 267.3 226 59.7
Ciclev10005785m.g Citrus clementina HOM05D006411 ORTHO05D007563 2.8e-69 266.5 248 58.5
Lj3g0004314 Lotus japonicus HOM05D006411 ORTHO05D007563 1.1e-68 264.6 248 58.1
Ah.03g135590 Amaranthus hybridus HOM05D006411 ORTHO05D007563 1.8e-68 263.8 248 56.9
Nitab4.5_0003020g0130 Nicotiana tabacum HOM05D006411 ORTHO05D007563 9.0e-68 261.5 228 57.9
ATR0751G011 Amborella trichopoda HOM05D006411 ORTHO05D006707 1.5e-67 260.8 191 65.4
EL10Ac6g13598 Beta vulgaris HOM05D006411 ORTHO05D007563 1.5e-67 260.8 255 56.9
THA.LOC104808624 Tarenaya hassleriana HOM05D006411 ORTHO05D007563 1.5e-67 260.8 226 58.0
AL3G37910 Arabidopsis lyrata HOM05D006411 ORTHO05D007563 3.4e-67 259.6 243 56.8
MSTRG.461 Avicennia marina HOM05D006411 ORTHO05D007563 4.5e-67 259.2 250 55.2
HanXRQChr17g0559141 Helianthus annuus HOM05D006411 ORTHO05D007563 5.8e-67 258.8 247 56.3
SGA_v2.0_scaffold80G25942 Striga asiatica HOM05D006411 ORTHO05D007563 5.8e-67 258.8 250 55.2
Sp3g20930 Schrenkiella parvula HOM05D006411 ORTHO05D007563 1.3e-66 257.7 243 56.8
Nitab4.5_0002671g0040 Nicotiana tabacum HOM05D006411 ORTHO05D007563 3.8e-66 256.1 249 53.8
Os10g0466100 Oryza sativa ssp. japonica HOM05D006411 ORTHO05D007563 3.8e-66 256.1 242 55.8
Glyma.11G109300 Glycine max HOM05D006411 ORTHO05D007563 6.5e-66 255.4 251 55.4
SHI04127 Sapria himalayana HOM05D006411 ORTHO05D007563 1.1e-65 254.6 253 53.4
SalBow2G2156 Salvia bowleyana HOM05D006411 ORTHO05D007563 1.4e-65 254.2 248 52.4
BcaB06g26470 Brassica carinata HOM05D006411 ORTHO05D007563 1.9e-65 253.8 243 57.6
SalBow7G1895 Salvia bowleyana HOM05D006411 ORTHO05D007563 1.9e-65 253.8 250 52.0
Thhalv10021467m.g Eutrema salsugineum HOM05D006411 ORTHO05D007563 2.5e-65 253.4 243 56.8
Zm00001eb222220 Zea mays HOM05D006411 ORTHO05D007563 2.5e-65 253.4 220 58.6
AUR62031618 Chenopodium quinoa HOM05D006411 ORTHO05D007563 4.2e-65 252.7 259 54.8
AT3G23255 Arabidopsis thaliana HOM05D006411 ORTHO05D007563 1.2e-64 251.1 245 55.1
A07p09200 Brassica napus HOM05D006411 ORTHO05D007563 1.2e-64 251.1 242 57.9
BraA07t28715Z Brassica rapa HOM05D006411 ORTHO05D007563 1.2e-64 251.1 242 58.3
Sc11g0000150 Simmondsia chinensis HOM05D006411 ORTHO05D007563 1.2e-64 251.1 203 63.5
Actinidia34001 Actinidia chinensis HOM05D006411 ORTHO05D007563 6.0e-64 248.8 189 63.5
ECA238G0094 Erigeron canadensis HOM05D006411 ORTHO05D007563 6.0e-64 248.8 239 53.6
Migut.K01066 Erythranthe guttata HOM05D006411 ORTHO05D007563 7.9e-64 248.4 245 55.5
C07p14190 Brassica napus HOM05D006411 ORTHO05D007563 2.3e-63 246.9 243 55.1
Cc11_g15120 Coffea canephora HOM05D006411 ORTHO05D007563 8.7e-63 245.0 263 51.3
TPR.G28023 Trifolium pratense HOM05D006411 ORTHO05D007563 1.5e-62 244.2 255 52.9
VMungo1127G0609 Vigna mungo HOM05D006411 ORTHO05D007563 1.5e-62 244.2 229 59.0
Aa31LG8G9800 Aethionema arabicum HOM05D006411 ORTHO05D007563 1.9e-62 243.8 247 54.3
BolC7t41915H Brassica oleracea HOM05D006411 ORTHO05D007563 3.3e-62 243.0 241 55.2
Psat7g169880 Pisum sativum HOM05D006411 ORTHO05D007563 5.7e-62 242.3 243 57.2
PGR119G0335 Punica granatum HOM05D006411 ORTHO05D007563 9.7e-62 241.5 244 53.3
Carub.0003s2350 Capsella rubella HOM05D006411 ORTHO05D007563 1.3e-61 241.1 243 54.3
Hund06130 Selenicereus undatus HOM05D006411 ORTHO05D007563 2.2e-61 240.4 268 51.1
CiPaw.05G102200 Carya illinoinensis HOM05D006411 ORTHO05D007563 6.3e-61 238.8 248 53.6
SEGI_29411 Sequoiadendron giganteum HOM05D006411 ORTHO05D007563 1.5e-59 234.2 250 49.6
Ca_18949_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 1.3e-58 231.1 261 49.4
Ca_29765_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 1.3e-58 231.1 261 49.4
HPP92_007040 Vanilla planifolia HOM05D006411 ORTHO05D007563 4.2e-57 226.1 221 53.8
Gohir.D01G132100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 5.5e-57 225.7 193 62.2
CARHR099210 Cardamine hirsuta HOM05D006411 ORTHO05D007563 2.1e-56 223.8 210 54.3
Carub.0137s0001 Capsella rubella HOM05D006411 ORTHO05D007563 8.2e-53 211.8 175 60.6
vmacro10313 Vaccinium macrocarpon HOM05D006411 ORTHO05D007563 2.4e-52 210.3 179 61.5
arahy.Tifrunner.gnm1.ann1.ZM7ZD1 Arachis hypogaea HOM05D006411 ORTHO05D007563 8.5e-50 201.8 258 46.1
MELO3C022353.2 Cucumis melo HOM05D006411 ORTHO05D007563 8.5e-50 201.8 207 50.2
Phvul.011G018400 Phaseolus vulgaris HOM05D006411 ORTHO05D007563 4.2e-49 199.5 188 57.4
ClCG06G001760 Citrullus lanatus HOM05D006411 ORTHO05D007563 6.1e-48 195.7 188 52.1
Lalb_Chr19g0140051 Lupinus albus HOM05D006411 ORTHO05D007563 8.8e-47 191.8 247 47.0
Lj5A251G70 Lonicera japonica HOM05D006411 ORTHO05D007563 1.3e-45 188.0 241 45.6
Nn2g15434 Nelumbo nucifera HOM05D006411 ORTHO05D007563 2.8e-45 186.8 196 56.1
Pp3c2_21820 Physcomitrium patens HOM05D006411 ORTHO05D007563 2.8e-45 186.8 216 44.9
Potri.003G163500 Populus trichocarpa HOM05D006411 ORTHO05D007563 4.8e-45 186.0 158 55.7
Medtr4g078190 Medicago truncatula HOM05D006411 ORTHO05D007563 8.2e-45 185.3 140 65.7
COL.COLO4_21790 Corchorus olitorius HOM05D006411 ORTHO05D007563 2.4e-44 183.7 246 45.5
CBR_g41204 Chara braunii HOM05D006411 ORTHO05D007563 1.6e-40 171.0 235 40.9
AUR62010749 Chenopodium quinoa HOM05D006411 ORTHO05D007563 3.7e-37 159.8 160 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2329 Anthoceros agrestis HOM05D014047 ORTHO05D007563 1.8e-36 157.5 192 44.3
AUR62020519 Chenopodium quinoa HOM05D006411 ORTHO05D007563 5.9e-35 152.5 161 55.9
Lj5g0007299 Lotus japonicus HOM05D006411 ORTHO05D007563 2.9e-34 150.2 164 53.0
Nn7g35834 Nelumbo nucifera HOM05D006411 ORTHO05D007563 5.0e-34 149.4 74 91.9
Mapoly0164s0017 Marchantia polymorpha HOM05D006411 ORTHO05D007563 1.5e-33 147.9 196 42.9
FvH4_4g07260 Fragaria vesca HOM05D006411 ORTHO05D007563 5.7e-30 136.0 115 55.7
Nn7g35833 Nelumbo nucifera HOM05D006411 ORTHO05D007563 3.6e-24 116.7 57 94.7
SHI32270 Sapria himalayana HOM05D006411 ORTHO05D007563 1.8e-23 114.4 133 48.9
SMO119G0262 Selaginella moellendorffii HOM05D006411 ORTHO05D007563 2.5e-17 94.0 132 35.6
Dinv15386 Davidia involucrata HOM05D006411 ORTHO05D007563 1.0e-15 88.6 61 62.3
AUR62015683 Chenopodium quinoa HOM05D006411 ORTHO05D007563 2.3e-15 87.4 71 60.6
MCO06G175 Micromonas commoda HOM05D006411 ORTHO05D007563 2.0e-14 84.3 179 33.0
SGA_v2.0_scaffold360G49865 Striga asiatica HOM05D020805 ORTHO05D007563 1.2e-11 75.1 86 50.0
Glyma.12G016051 Glycine max HOM05D006411 ORTHO05D007563 9.5e-09 65.5 82 48.8
Peaxi162Scf00217g00911 Petunia axillaris HOM05D006411 ORTHO05D007563 5.2e-07 59.7 159 28.9
MBI02_g46060_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 2.0e-06 57.8 39 64.1
MBI05_g34743_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 5.8e-06 56.2 40 60.0
MBI04_g21533_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 7.5e-06 55.8 38 65.8


User provided reference genes

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