Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07815 Nelumbo nucifera HOM05D057241 ORTHO05D005739 6.4e-69 263.8 123 100.0
TAR362G0932 Trochodendron aralioides HOM05D000590 ORTHO05D005739 3.2e-12 75.5 67 52.2
Cfa008549 Carpinus fangiana HOM05D000590 ORTHO05D005739 3.6e-11 72.0 67 53.7
Cc00_g10020 Coffea canephora HOM05D000590 ORTHO05D005739 3.6e-11 72.0 67 53.7
Haze_11082 Corylus avellana HOM05D000590 ORTHO05D005739 3.6e-11 72.0 67 53.7
SGA_v2.0_scaffold290G47293 Striga asiatica HOM05D000590 ORTHO05D005739 4.7e-11 71.6 67 53.7
MSTRG.21982 Avicennia marina HOM05D000590 ORTHO05D005739 7.9e-11 70.9 67 50.7
GSVIVG01013555001 Vitis vinifera HOM05D000590 ORTHO05D005739 7.9e-11 70.9 67 50.7
Ciclev10018602m.g Citrus clementina HOM05D000590 ORTHO05D005739 2.3e-10 69.3 67 52.2
Sabra02G0177600 Salix brachista HOM05D000590 ORTHO05D005739 3.0e-10 68.9 67 50.7
CiPaw.01G108600 Carya illinoinensis HOM05D000590 ORTHO05D005739 5.1e-10 68.2 67 50.7
Potri.002G232800 Populus trichocarpa HOM05D000590 ORTHO05D005739 5.1e-10 68.2 67 49.3
Gohir.A10G136500 Gossypium hirsutum HOM05D000590 ORTHO05D005739 6.7e-10 67.8 67 53.7
PSO675G4267 Papaver somniferum HOM05D000590 ORTHO05D005739 6.7e-10 67.8 67 49.3
Manes.04G059300 Manihot esculenta HOM05D000590 ORTHO05D005739 1.1e-09 67.0 67 50.7
Thecc.04G180700 Theobroma cacao HOM05D000590 ORTHO05D005739 1.5e-09 66.6 67 52.2
Lj3C343G2 Lonicera japonica HOM05D000590 ORTHO05D005739 2.0e-09 66.2 67 50.7
Nn1g07814 Nelumbo nucifera HOM05D057241 ORTHO05D005739 2.6e-09 65.9 37 75.7
CDE06G2342 Ceratophyllum demersum HOM05D000590 ORTHO05D005739 3.3e-09 65.5 67 47.8
CDE08G0067 Ceratophyllum demersum HOM05D000590 ORTHO05D005739 3.3e-09 65.5 67 47.8
Sed0026193 Sechium edule HOM05D000590 ORTHO05D005739 3.3e-09 65.5 67 49.3
Dinv44239 Davidia involucrata HOM05D000590 ORTHO05D005739 4.4e-09 65.1 67 52.2
Potri.014G146300 Populus trichocarpa HOM05D000590 ORTHO05D005739 4.4e-09 65.1 67 47.8
Peaxi162Scf00286g00342 Petunia axillaris HOM05D000590 ORTHO05D005739 5.7e-09 64.7 67 50.7
Sc07g0007210 Simmondsia chinensis HOM05D000590 ORTHO05D005739 5.7e-09 64.7 67 47.8
Nitab4.5_0001687g0070 Nicotiana tabacum HOM05D000590 ORTHO05D005739 7.4e-09 64.3 67 49.3
Nitab4.5_0026039g0010 Nicotiana tabacum HOM05D000590 ORTHO05D005739 7.4e-09 64.3 67 49.3
ClCG08G003700 Citrullus lanatus HOM05D000590 ORTHO05D005739 9.7e-09 63.9 67 47.8
MELO3C026117.2 Cucumis melo HOM05D000590 ORTHO05D005739 9.7e-09 63.9 67 47.8
CsaV3_6G003090 Cucumis sativus L. HOM05D000590 ORTHO05D005739 9.7e-09 63.9 67 47.8
DCAR_023890 Daucus carota HOM05D000590 ORTHO05D005739 9.7e-09 63.9 67 47.8
Migut.N00443 Erythranthe guttata HOM05D000590 ORTHO05D005739 9.7e-09 63.9 67 46.3
Lsat_1_v5_gn_5_63200 Lactuca sativa HOM05D000590 ORTHO05D005739 9.7e-09 63.9 67 46.3
MD04G1028600 Malus domestica HOM05D000590 ORTHO05D005739 1.3e-08 63.5 67 49.3
PSO017G6033 Papaver somniferum HOM05D000590 ORTHO05D005739 1.3e-08 63.5 67 47.8
Sopen09g036190 Solanum pennellii HOM05D000590 ORTHO05D005739 1.3e-08 63.5 67 47.8
Eucgr.H00451 Eucalyptus grandis HOM05D000590 ORTHO05D005739 1.7e-08 63.2 67 49.3
FvH4_4g12210 Fragaria vesca HOM05D000590 ORTHO05D005739 1.7e-08 63.2 67 49.3
Prupe.1G177800 Prunus persica HOM05D000590 ORTHO05D005739 1.7e-08 63.2 67 49.3
Atru.chr3.1727 Acer truncatum HOM05D000590 ORTHO05D005739 2.2e-08 62.8 67 47.8
Cpa.g.sc50.132 Carica papaya HOM05D000590 ORTHO05D005739 2.2e-08 62.8 67 50.7
FAN07G2789 Fragaria x ananassa HOM05D000590 ORTHO05D005739 2.2e-08 62.8 67 49.3
FAN22G1397 Fragaria x ananassa HOM05D000590 ORTHO05D005739 2.2e-08 62.8 67 49.3
Glyma.08G258500 Glycine max HOM05D000590 ORTHO05D005739 2.2e-08 62.8 67 49.3
Gohir.D10G130300 Gossypium hirsutum HOM05D000590 ORTHO05D005739 2.2e-08 62.8 71 50.7
Gorai.011G144000 Gossypium raimondii HOM05D000590 ORTHO05D005739 2.2e-08 62.8 71 50.7
Glyma.18G282700 Glycine max HOM05D000590 ORTHO05D005739 2.8e-08 62.4 67 49.3
HanXRQChr13g0390161 Helianthus annuus HOM05D000590 ORTHO05D005739 2.8e-08 62.4 67 46.3
Oeu029902.1 Olea europaea HOM05D000590 ORTHO05D005739 2.8e-08 62.4 67 49.3
QL10p044299 Quercus lobata HOM05D000590 ORTHO05D005739 2.8e-08 62.4 67 49.3
FAN17G1987 Fragaria x ananassa HOM05D000590 ORTHO05D005739 4.8e-08 61.6 67 49.3
THA.LOC104800910 Tarenaya hassleriana HOM05D000590 ORTHO05D005739 4.8e-08 61.6 67 47.8
Psat3g189880 Pisum sativum HOM05D000590 ORTHO05D005739 6.3e-08 61.2 67 47.8
RcHm_v2.0_Chr4g0409981 Rosa chinensis HOM05D000590 ORTHO05D005739 8.2e-08 60.8 67 47.8
Sed0020632 Sechium edule HOM05D000590 ORTHO05D005739 8.2e-08 60.8 67 46.3
Solyc09g098260.3 Solanum lycopersicum HOM05D000590 ORTHO05D005739 8.2e-08 60.8 67 47.8
unitig_578.g16517 Utricularia gibba HOM05D000590 ORTHO05D005739 8.2e-08 60.8 65 47.7
CSS0029067 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D005739 1.1e-07 60.5 67 47.8
Thhalv10016217m.g Eutrema salsugineum HOM05D000590 ORTHO05D005739 1.4e-07 60.1 68 47.1
Lj1g0024416 Lotus japonicus HOM05D000590 ORTHO05D005739 1.4e-07 60.1 67 46.3
TWI63G0312 Tripterygium wilfordii HOM05D000590 ORTHO05D005739 1.4e-07 60.1 67 47.8
VMungo1383G1517 Vigna mungo HOM05D000590 ORTHO05D005739 2.4e-07 59.3 67 46.3
Medtr7g021365 Medicago truncatula HOM05D000590 ORTHO05D005739 3.1e-07 58.9 67 46.3
TPR.G2958 Trifolium pratense HOM05D000590 ORTHO05D005739 3.1e-07 58.9 67 46.3
AT2G31650 Arabidopsis thaliana HOM05D000590 ORTHO05D005739 4.1e-07 58.5 68 47.1
Dinv22651 Davidia involucrata HOM05D000590 ORTHO05D005739 4.1e-07 58.5 58 51.7
ECA233G2054 Erigeron canadensis HOM05D000590 ORTHO05D005739 4.1e-07 58.5 67 41.8
Phvul.008G018500 Phaseolus vulgaris HOM05D000590 ORTHO05D005739 4.1e-07 58.5 67 46.3
Lalb_Chr17g0336461 Lupinus albus HOM05D000590 ORTHO05D005739 7.0e-07 57.8 67 47.8
Sp4g14050 Schrenkiella parvula HOM05D000590 ORTHO05D005739 7.0e-07 57.8 68 47.1
Hma1.2p1_0412F.1_g147170 Hydrangea macrophylla HOM05D000590 ORTHO05D005739 9.1e-07 57.4 67 44.8
Lalb_Chr04g0258071 Lupinus albus HOM05D000590 ORTHO05D005739 9.1e-07 57.4 67 46.3
Ca_07101_v3 Cicer arietinum L. HOM05D000590 ORTHO05D005739 1.2e-06 57.0 67 44.8
AT1G05830 Arabidopsis thaliana HOM05D000590 ORTHO05D005739 1.5e-06 56.6 68 47.1
arahy.Tifrunner.gnm1.ann1.631JZ3 Arachis hypogaea HOM05D000590 ORTHO05D005739 1.5e-06 56.6 91 39.6
arahy.Tifrunner.gnm1.ann1.NCWU1I Arachis hypogaea HOM05D000590 ORTHO05D005739 1.5e-06 56.6 91 39.6
AL1G15760 Arabidopsis lyrata HOM05D000590 ORTHO05D005739 3.4e-06 55.5 68 47.1
Carub.0004s1295 Capsella rubella HOM05D000590 ORTHO05D005739 3.4e-06 55.5 68 45.6
Aa31LG1G8510 Aethionema arabicum HOM05D000590 ORTHO05D005739 4.5e-06 55.1 68 45.6
Ah.12g062200 Amaranthus hybridus HOM05D000590 ORTHO05D005739 4.5e-06 55.1 67 44.8
Aa31LG5G5330 Aethionema arabicum HOM05D000590 ORTHO05D005739 5.9e-06 54.7 68 42.6
Sp1g04640 Schrenkiella parvula HOM05D000590 ORTHO05D005739 5.9e-06 54.7 68 45.6
C04p60890 Brassica napus HOM05D000590 ORTHO05D005739 7.7e-06 54.3 68 45.6
BolC4t27580H Brassica oleracea HOM05D000590 ORTHO05D005739 7.7e-06 54.3 68 45.6


User provided reference genes

Program Settings