Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.4e-298 1028.9 519 100.0
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 7.9e-177 624.4 520 63.3
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 5.9e-156 555.1 472 61.7
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 8.4e-155 551.2 527 58.3
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 5.1e-152 542.0 522 57.7
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 6.5e-147 525.0 520 55.8
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 3.3e-143 512.7 523 55.3
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 6.9e-141 505.0 525 53.3
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 2.7e-137 493.0 525 52.6
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 3.6e-137 492.7 523 52.6
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 2.3e-136 490.0 520 52.1
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 3.9e-136 489.2 520 52.5
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 1.1e-135 487.6 520 53.1
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.5e-135 487.3 353 70.8
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 4.4e-135 485.7 505 54.3
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 1.1e-133 481.1 520 51.2
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.1e-133 481.1 531 52.7
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.4e-133 480.7 529 50.9
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 9.1e-133 478.0 525 50.9
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 1.6e-132 477.2 523 52.4
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 3.5e-132 476.1 575 48.7
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 3.5e-132 476.1 520 50.8
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 3.5e-132 476.1 518 52.9
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 4.5e-132 475.7 458 55.2
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 7.7e-132 474.9 526 50.6
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 3.2e-130 469.5 521 51.6
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 1.2e-129 467.6 521 49.3
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 1.6e-129 467.2 521 50.7
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.6e-129 466.1 523 52.0
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 6.1e-129 465.3 523 50.3
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 4.0e-128 462.6 486 54.1
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 5.2e-128 462.2 522 50.0
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 2.0e-127 460.3 527 50.9
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 7.5e-127 458.4 526 49.0
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 2.2e-126 456.8 457 53.4
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 2.8e-126 456.4 528 50.4
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.4e-125 453.4 524 49.6
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 1.0e-123 448.0 455 53.0
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.1e-122 444.5 524 49.0
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 7.2e-122 441.8 442 54.5
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.7e-121 439.9 576 46.9
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 2.3e-120 436.8 448 51.3
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 2.3e-120 436.8 490 49.8
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 4.0e-120 436.0 520 47.9
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 2.6e-119 433.3 603 45.9
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 8.3e-118 428.3 523 48.0
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 5.4e-117 425.6 445 52.6
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 5.4e-117 425.6 526 47.3
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 9.1e-117 424.9 496 50.2
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 2.0e-116 423.7 523 47.4
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.9e-116 422.2 455 51.0
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 2.2e-115 420.2 521 46.4
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.9e-115 419.9 454 50.7
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 3.8e-115 419.5 436 51.8
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 8.5e-115 418.3 478 50.6
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 1.1e-114 417.9 520 47.5
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 3.2e-114 416.4 524 46.8
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 1.2e-113 414.5 394 55.3
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 6.1e-113 412.1 526 46.0
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 2.3e-112 410.2 450 49.8
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 3.0e-112 409.8 520 46.7
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 7.5e-111 405.2 439 51.0
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 1.7e-110 404.1 449 50.1
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 2.2e-110 403.7 441 52.6
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 4.9e-110 402.5 468 49.1
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 1.1e-109 401.4 520 46.2
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 1.4e-109 401.0 483 47.8
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 2.4e-109 400.2 525 43.6
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 4.1e-109 399.4 523 44.2
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 9.2e-109 398.3 530 43.4
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 9.2e-109 398.3 524 45.6
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 1.6e-108 397.5 540 44.1
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 4.5e-108 396.0 446 50.0
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 6.6e-107 392.1 516 44.8
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 1.1e-106 391.3 519 45.7
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 5.6e-106 389.0 459 47.5
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 9.5e-106 388.3 514 45.9
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 2.1e-105 387.1 461 48.2
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 2.1e-105 387.1 461 48.2
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 2.8e-105 386.7 461 47.9
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 2.8e-105 386.7 448 48.4
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 4.7e-105 386.0 520 44.4
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 1.4e-104 384.4 472 47.5
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.4e-104 384.4 461 47.9
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 5.2e-104 382.5 372 55.4
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 2.0e-103 380.6 471 46.9
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 3.4e-103 379.8 521 44.9
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 4.9e-102 375.9 448 48.0
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 4.9e-102 375.9 448 48.0
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 3.2e-101 373.2 523 44.4
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 4.6e-100 369.4 448 48.0
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.6e-100 369.4 305 64.9
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 3.3e-98 363.2 465 43.9
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 5.6e-98 362.5 535 40.0
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 3.1e-96 356.7 523 43.8
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 1.2e-92 344.7 457 43.3
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 7.3e-90 335.5 466 43.8
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 8.9e-88 328.6 375 45.6
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 8.9e-80 302.0 489 38.2
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 2.4e-77 293.9 371 44.2
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 9.6e-74 282.0 205 70.7
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.8e-64 251.1 283 51.6
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 6.0e-60 236.1 489 35.4
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 2.8e-57 227.3 313 43.8
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.2e-57 226.1 305 46.9
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 9.0e-56 222.2 454 33.0
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 4.5e-55 219.9 189 62.4
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 5.8e-55 219.5 280 43.2
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 6.7e-51 206.1 466 35.0
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 1.5e-47 194.9 469 31.1
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 5.8e-47 193.0 226 47.3
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 1.7e-46 191.4 424 33.7
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 5.1e-43 179.9 142 65.5
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 6.9e-40 169.5 271 40.2
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.5e-38 162.9 125 66.4
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 1.9e-34 151.4 310 33.2
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.1e-32 144.1 145 57.9
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 6.9e-32 142.9 137 53.3
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 2.2e-30 137.9 119 59.7
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 2.3e-27 127.9 274 33.6
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 3.2e-21 107.5 115 52.2
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.1e-16 90.5 107 48.6
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.6e-15 87.8 92 51.1
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 4.5e-15 87.0 74 56.8
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 1.7e-14 85.1 122 42.6
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 1.9e-13 81.6 211 30.3
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 1.7e-09 68.6 143 33.6
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 1.0e-06 59.3 63 44.4


User provided reference genes

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