Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 4.5e-206 721.1 378 100.0
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 7.8e-158 560.8 378 77.5
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.0e-133 480.7 377 68.4
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.3e-116 422.5 377 60.2
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.1e-114 417.5 375 59.5
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 1.2e-113 414.1 378 59.3
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.6e-113 412.9 377 59.4
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 7.1e-111 404.8 358 62.6
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.0e-109 401.0 377 59.2
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.8e-106 390.2 375 59.7
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 1.5e-105 387.1 375 56.8
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 2.2e-104 383.3 330 63.6
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 1.9e-103 380.2 376 56.9
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 5.5e-103 378.6 384 56.8
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 6.0e-102 375.2 374 57.2
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 6.0e-102 375.2 374 57.2
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 6.0e-102 375.2 374 58.8
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.8e-101 373.6 361 59.6
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 6.7e-101 371.7 376 58.2
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 8.7e-101 371.3 376 54.5
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 1.6e-99 367.1 374 55.6
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.6e-99 367.1 368 57.1
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 2.8e-99 366.3 377 54.9
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.8e-99 365.5 341 57.2
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 8.2e-99 364.8 370 55.7
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 5.3e-98 362.1 373 54.7
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.2e-97 360.9 370 55.1
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.5e-97 360.5 374 54.0
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.5e-97 360.5 371 54.7
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.0e-96 357.8 371 54.2
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.7e-96 357.1 374 55.1
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.8e-96 355.9 376 55.3
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.5e-96 355.1 378 53.4
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.4e-95 354.0 378 53.2
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 5.5e-95 352.1 349 57.6
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.3e-95 351.3 371 53.6
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.6e-94 350.5 376 53.5
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 3.6e-94 349.4 396 51.3
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 2.3e-93 346.7 374 52.7
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.7e-93 345.1 378 51.9
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 8.7e-93 344.7 311 58.5
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.9e-92 343.6 376 52.7
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.9e-92 343.6 375 54.4
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.5e-92 343.2 378 51.9
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.3e-92 342.8 366 52.7
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 3.3e-92 342.8 378 52.9
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 5.7e-92 342.0 375 52.8
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 7.4e-92 341.7 357 54.9
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.3e-91 340.9 376 52.4
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 2.8e-91 339.7 373 51.5
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 2.8e-91 339.7 374 52.7
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.4e-90 337.4 376 51.3
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.8e-90 337.0 374 52.4
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 9.1e-90 334.7 411 49.4
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 4.5e-89 332.4 375 53.1
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.0e-88 331.3 327 58.7
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 2.2e-88 330.1 357 53.5
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 2.9e-88 329.7 374 50.8
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 8.5e-88 328.2 372 52.2
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 8.5e-88 328.2 375 52.0
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.5e-88 328.2 373 49.6
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 1.4e-87 327.4 375 53.3
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.9e-87 327.0 372 51.3
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.2e-86 324.3 375 51.5
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 4.6e-86 322.4 374 51.6
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 7.9e-86 321.6 374 50.8
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.0e-85 321.2 376 50.5
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.3e-85 320.1 372 50.8
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.1e-85 318.9 373 48.8
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.5e-84 317.4 373 48.5
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 2.0e-84 317.0 357 52.7
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 5.7e-84 315.5 357 51.5
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 7.4e-84 315.1 375 50.7
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 2.2e-83 313.5 374 50.3
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 4.8e-83 312.4 356 50.6
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 6.3e-83 312.0 329 55.6
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.4e-82 310.8 376 46.3
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.8e-82 310.5 374 49.7
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 2.4e-82 310.1 375 50.1
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 2.4e-82 310.1 375 47.2
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 6.9e-82 308.5 375 49.9
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.2e-81 307.8 374 46.8
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 3.4e-81 306.2 309 53.4
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 4.5e-81 305.8 363 49.6
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 7.7e-81 305.1 376 50.3
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.3e-80 304.3 334 54.2
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.3e-80 304.3 376 46.0
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 1.7e-80 303.9 366 50.0
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 2.2e-80 303.5 383 46.7
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 5.0e-80 302.4 357 51.3
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 1.1e-79 301.2 359 50.7
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.9e-79 300.4 375 45.9
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 1.6e-78 297.4 344 49.4
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 3.6e-78 296.2 375 46.7
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.4e-77 294.3 374 46.3
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.4e-77 294.3 375 45.1
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.4e-77 294.3 375 45.1
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.4e-77 294.3 378 47.9
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 3.0e-77 293.1 375 46.1
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.0e-77 293.1 373 48.5
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.5e-76 290.8 374 45.5
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.5e-76 290.8 375 45.3
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.6e-76 290.0 374 46.3
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 4.4e-76 289.3 377 45.1
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 9.7e-76 288.1 374 46.3
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.3e-75 287.7 375 45.1
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 3.7e-75 286.2 331 50.5
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 3.7e-75 286.2 374 45.7
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 8.2e-75 285.0 376 44.9
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 8.2e-75 285.0 374 46.3
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 8.2e-75 285.0 376 44.9
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 2.4e-74 283.5 333 49.8
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 5.3e-74 282.3 375 44.3
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 3.5e-73 279.6 377 44.3
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 5.9e-73 278.9 377 45.4
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.0e-72 278.1 374 45.5
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.7e-72 277.3 358 45.5
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.7e-72 277.3 377 45.4
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-72 277.3 377 45.4
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.5e-71 274.2 351 47.0
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 2.1e-70 270.4 377 44.0
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.8e-69 267.3 375 44.0
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 2.6e-68 263.5 354 47.2
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 2.2e-64 250.4 356 44.9
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 3.8e-64 249.6 377 42.2
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 9.4e-63 245.0 288 48.6
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 8.8e-61 238.4 270 49.3
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 5.4e-58 229.2 335 43.6
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.3e-56 224.6 284 47.5
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 3.1e-50 203.4 204 53.9
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 9.2e-34 148.7 130 62.3
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.5e-31 141.4 131 61.8
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.3e-27 128.3 375 33.6
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.4e-26 124.8 391 30.2
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.7e-25 120.6 149 40.9
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 7.8e-25 119.0 263 34.6
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.0e-24 118.6 142 43.0
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.0e-24 118.6 381 28.9
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.3e-24 118.2 380 27.6
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 2.3e-24 117.5 151 43.7
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 5.6e-23 112.8 91 57.1
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 7.3e-23 112.5 206 38.3
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 7.3e-23 112.5 118 51.7
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.7e-22 109.8 136 41.9
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.4e-21 107.5 153 38.6
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 8.9e-21 105.5 378 27.2
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 2.6e-20 104.0 243 30.0
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.7e-17 94.0 126 38.9
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.6e-12 77.4 88 46.6
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.6e-12 77.4 88 46.6
HPP92_028133 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.1e-10 72.0 156 33.3
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 3.2e-10 70.5 81 39.5
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 4.6e-09 66.6 68 54.4
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 1.7e-08 64.7 67 49.3
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 2.3e-08 64.3 67 50.7
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 3.9e-08 63.5 67 49.3
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 9.6e-07 58.9 75 41.3
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 1.6e-06 58.2 53 52.8
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 1.6e-06 58.2 63 44.4


User provided reference genes

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