Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07745 Nelumbo nucifera HOM05D006552 ORTHO05D008023 5.2e-154 547.7 289 100.0
Nn1g07572 Nelumbo nucifera HOM05D006552 ORTHO05D008023 6.2e-123 444.5 279 83.9
TAR629G0917 Trochodendron aralioides HOM05D006552 ORTHO05D008023 7.9e-110 401.0 279 78.9
TAR627G1046 Trochodendron aralioides HOM05D006552 ORTHO05D008023 1.3e-109 400.2 278 77.7
Dinv04390 Davidia involucrata HOM05D006552 ORTHO05D008023 2.1e-102 376.3 277 73.6
PSO210G1853 Papaver somniferum HOM05D006552 ORTHO05D008023 8.7e-101 370.9 274 71.9
PSO210G5261 Papaver somniferum HOM05D006552 ORTHO05D008023 2.5e-100 369.4 274 71.5
MBI15_g38532_MAGBIO Magnolia biondii HOM05D006552 ORTHO05D008023 3.1e-98 362.5 275 73.8
Lalb_Chr15g0088331 Lupinus albus HOM05D006552 ORTHO05D008023 2.0e-97 359.8 273 71.8
Dinv07143 Davidia involucrata HOM05D006552 ORTHO05D008023 3.4e-97 359.0 277 71.5
Prupe.4G002500 Prunus persica HOM05D006552 ORTHO05D008023 1.7e-96 356.7 273 71.1
Hma1.2p1_0048F.1_g028110 Hydrangea macrophylla HOM05D006552 ORTHO05D008023 4.9e-96 355.1 268 72.8
Potri.006G003100 Populus trichocarpa HOM05D006552 ORTHO05D008023 4.9e-96 355.1 275 72.4
CSS0027101 Camellia sinensis var. sinensis HOM05D006552 ORTHO05D008023 8.4e-96 354.4 280 70.7
CSS0045827 Camellia sinensis var. sinensis HOM05D006552 ORTHO05D008023 8.4e-96 354.4 280 70.7
CiPaw.09G110600 Carya illinoinensis HOM05D006552 ORTHO05D008023 4.2e-95 352.1 271 71.6
QL05p066675 Quercus lobata HOM05D006552 ORTHO05D008023 1.2e-94 350.5 271 70.5
Glyma.15G121600 Glycine max HOM05D006552 ORTHO05D008023 2.7e-94 349.4 270 72.6
Cfa000018 Carpinus fangiana HOM05D006552 ORTHO05D008023 7.9e-94 347.8 272 69.9
Oeu022389.1 Olea europaea HOM05D006552 ORTHO05D008023 7.9e-94 347.8 256 73.4
arahy.Tifrunner.gnm1.ann1.UF9Q9U Arachis hypogaea HOM05D006552 ORTHO05D008023 1.8e-93 346.7 275 70.5
vmacro03594 Vaccinium macrocarpon HOM05D006552 ORTHO05D008023 1.8e-93 346.7 278 69.4
Sabra06G0002900 Salix brachista HOM05D006552 ORTHO05D008023 3.9e-93 345.5 277 69.0
arahy.Tifrunner.gnm1.ann1.25NBW7 Arachis hypogaea HOM05D006552 ORTHO05D008023 5.1e-93 345.1 275 70.2
MD10G1340400 Malus domestica HOM05D006552 ORTHO05D008023 1.1e-92 344.0 274 68.6
Glyma.09G015800 Glycine max HOM05D006552 ORTHO05D008023 1.9e-92 343.2 270 71.5
EL10Ac8g20280 Beta vulgaris HOM05D006552 ORTHO05D008023 2.5e-92 342.8 278 69.1
AUR62043507 Chenopodium quinoa HOM05D006552 ORTHO05D008023 2.5e-92 342.8 277 69.7
Haze_07043 Corylus avellana HOM05D006552 ORTHO05D008023 3.3e-92 342.4 273 68.9
Haze_09863 Corylus avellana HOM05D006552 ORTHO05D008023 7.4e-92 341.3 274 68.2
Manes.09G084700 Manihot esculenta HOM05D006552 ORTHO05D008023 1.6e-91 340.1 277 70.4
Potri.016G003800 Populus trichocarpa HOM05D006552 ORTHO05D008023 1.6e-91 340.1 278 71.2
Sc17g0008030 Simmondsia chinensis HOM05D006552 ORTHO05D008023 2.8e-91 339.3 279 68.8
Rhsim13G0138800 Rhododendron simsii HOM05D006552 ORTHO05D008023 4.8e-91 338.6 278 67.6
Ciclev10015322m.g Citrus clementina HOM05D006552 ORTHO05D008023 6.3e-91 338.2 281 66.9
Duzib192G0073 Durio zibethinus HOM05D006552 ORTHO05D008023 8.2e-91 337.8 279 70.6
TWI38G0911 Tripterygium wilfordii HOM05D006552 ORTHO05D008023 1.1e-90 337.4 278 69.4
Cc09_g00200 Coffea canephora HOM05D006552 ORTHO05D008023 2.4e-90 336.3 276 69.2
Ca_00774_v3 Cicer arietinum L. HOM05D006552 ORTHO05D008023 3.1e-90 335.9 273 68.1
Phvul.006G136100 Phaseolus vulgaris HOM05D006552 ORTHO05D008023 3.1e-90 335.9 272 71.0
Hund21124 Selenicereus undatus HOM05D006552 ORTHO05D008023 3.1e-90 335.9 276 67.4
COL.COLO4_31951 Corchorus olitorius HOM05D002176 ORTHO05D002598 5.3e-90 335.1 282 67.0
Sabra16G0008800 Salix brachista HOM05D006552 ORTHO05D008023 5.3e-90 335.1 278 70.1
VMungo0540G0040 Vigna mungo HOM05D006552 ORTHO05D008023 6.9e-90 334.7 253 73.5
CDE10G0757 Ceratophyllum demersum HOM05D006552 ORTHO05D008023 2.6e-89 332.8 284 65.1
TPR.G10495 Trifolium pratense HOM05D006552 ORTHO05D008023 4.5e-89 332.0 273 66.3
Atru.chr1.2171 Acer truncatum HOM05D006552 ORTHO05D008023 1.0e-88 330.9 290 63.8
Migut.M01459 Erythranthe guttata HOM05D006552 ORTHO05D008023 1.0e-88 330.9 279 67.4
AUR62022328 Chenopodium quinoa HOM05D006552 ORTHO05D008023 1.7e-88 330.1 285 66.0
MD05G1362800 Malus domestica HOM05D006552 ORTHO05D008023 2.9e-88 329.3 274 67.9
RcHm_v2.0_Chr5g0000281 Rosa chinensis HOM05D006552 ORTHO05D008023 3.8e-88 328.9 272 66.9
FvH4_3g00210 Fragaria vesca HOM05D006552 ORTHO05D008023 1.1e-87 327.4 276 67.0
ClCG01G011480 Citrullus lanatus HOM05D006552 ORTHO05D008023 1.4e-87 327.0 273 65.6
Lj6g0006082 Lotus japonicus HOM05D006552 ORTHO05D008023 1.9e-87 326.6 276 67.0
Gohir.D06G218700 Gossypium hirsutum HOM05D006552 ORTHO05D008023 3.2e-87 325.9 274 67.9
CsaV3_1G015300 Cucumis sativus L. HOM05D006552 ORTHO05D008023 4.2e-87 325.5 271 65.7
Gorai.010G247600 Gossypium raimondii HOM05D006552 ORTHO05D008023 4.2e-87 325.5 274 67.9
Zm00001eb219360 Zea mays HOM05D006552 ORTHO05D008023 4.2e-87 325.5 273 66.7
ATR0751G220 Amborella trichopoda HOM05D006552 ORTHO05D008023 5.5e-87 325.1 272 69.1
Thecc.06G242500 Theobroma cacao HOM05D006552 ORTHO05D008023 5.5e-87 325.1 278 67.3
Peaxi162Scf00811g00441 Petunia axillaris HOM05D006552 ORTHO05D008023 7.2e-87 324.7 276 67.4
Psat1g173280 Pisum sativum HOM05D006552 ORTHO05D008023 7.2e-87 324.7 275 66.2
Gohir.A06G203000 Gossypium hirsutum HOM05D006552 ORTHO05D008023 1.6e-86 323.6 274 67.5
Aqoxy1G04286 Aquilegia oxysepala HOM05D006552 ORTHO05D008023 2.1e-86 323.2 275 66.9
MELO3C021670.2 Cucumis melo HOM05D006552 ORTHO05D008023 3.6e-86 322.4 271 65.3
Eucgr.E03832 Eucalyptus grandis HOM05D006552 ORTHO05D008023 4.6e-86 322.0 271 65.7
Zm00001eb049800 Zea mays HOM05D006552 ORTHO05D008023 4.6e-86 322.0 275 65.8
Os08g0326100 Oryza sativa ssp. japonica HOM05D006552 ORTHO05D008023 7.9e-86 321.2 271 65.7
Solyc04g015170.3 Solanum lycopersicum HOM05D006552 ORTHO05D008023 1.0e-85 320.9 277 67.9
Sopen04g007210 Solanum pennellii HOM05D006552 ORTHO05D008023 1.0e-85 320.9 277 67.9
Duzib235G0521 Durio zibethinus HOM05D006552 ORTHO05D008023 3.0e-85 319.3 240 71.2
PGSC0003DMG400019743 Solanum tuberosum HOM05D006552 ORTHO05D008023 3.0e-85 319.3 277 67.9
CAN.G1456.4 Capsicum annuum HOM05D006552 ORTHO05D008023 5.1e-85 318.5 271 68.6
SalBow8G5435 Salvia bowleyana HOM05D006552 ORTHO05D008023 5.1e-85 318.5 274 68.2
Nitab4.5_0000147g0210 Nicotiana tabacum HOM05D006552 ORTHO05D008023 8.8e-85 317.8 277 67.1
Cfa021888 Carpinus fangiana HOM05D006552 ORTHO05D008023 1.1e-84 317.4 279 65.2
Medtr2g027390 Medicago truncatula HOM05D006552 ORTHO05D008023 1.1e-84 317.4 274 65.7
Cpa.g.sc27.207 Carica papaya HOM05D006552 ORTHO05D008023 1.5e-84 317.0 274 65.7
PGR004G2161 Punica granatum HOM05D006552 ORTHO05D008023 2.0e-84 316.6 236 72.9
FAN25G2008 Fragaria x ananassa HOM05D006552 ORTHO05D008023 5.7e-84 315.1 274 65.7
Nitab4.5_0010199g0040 Nicotiana tabacum HOM05D006552 ORTHO05D008023 1.7e-83 313.5 251 70.9
SalBow8G4188 Salvia bowleyana HOM05D006552 ORTHO05D008023 1.7e-83 313.5 271 67.5
Ah.12g051860 Amaranthus hybridus HOM05D006552 ORTHO05D008023 3.7e-83 312.4 277 64.6
Sed0011361 Sechium edule HOM05D006552 ORTHO05D008023 4.1e-82 308.9 275 62.2
DCAR_002248 Daucus carota HOM05D006552 ORTHO05D008023 1.2e-81 307.4 279 63.4
SEGI_31055 Sequoiadendron giganteum HOM05D006552 ORTHO05D008023 1.2e-81 307.4 294 59.5
CANSAT56G3604 Cannabis sativa HOM05D006552 ORTHO05D008023 1.7e-80 303.5 203 77.8
Lsat_1_v5_gn_7_12841 Lactuca sativa HOM05D006552 ORTHO05D008023 2.2e-80 303.1 274 66.1
SGA_v2.0_scaffold7G03676 Striga asiatica HOM05D006552 ORTHO05D008023 4.7e-78 295.4 250 66.8
Lj2A255T60 Lonicera japonica HOM05D006552 ORTHO05D008023 2.3e-77 293.1 247 70.4
THA.LOC104806746 Tarenaya hassleriana HOM05D006552 ORTHO05D008023 2.6e-76 289.7 273 62.3
Thhalv10000925m.g Eutrema salsugineum HOM05D006552 ORTHO05D008023 1.8e-74 283.5 276 59.4
Aa31sc219G30 Aethionema arabicum HOM05D006552 ORTHO05D008023 4.1e-74 282.3 276 59.8
unitig_62.g23502 Utricularia gibba HOM05D006552 ORTHO05D008023 5.9e-73 278.5 280 57.9
ECA150G0011 Erigeron canadensis HOM05D006552 ORTHO05D008023 2.0e-68 263.5 271 62.0
A06p44780 Brassica napus HOM05D006552 ORTHO05D008023 2.6e-68 263.1 275 58.9
Carub.0008s0068 Capsella rubella HOM05D006552 ORTHO05D008023 2.6e-68 263.1 278 57.9
BraA06t27351Z Brassica rapa HOM05D006552 ORTHO05D008023 3.3e-68 262.7 234 64.5
HanXRQChr05g0129001 Helianthus annuus HOM05D006552 ORTHO05D008023 3.3e-68 262.7 273 61.5
Actinidia12830 Actinidia chinensis HOM05D006552 ORTHO05D008023 4.4e-68 262.3 180 76.7
C07p31420 Brassica napus HOM05D006552 ORTHO05D008023 3.7e-67 259.2 277 58.5
BolC7t43685H Brassica oleracea HOM05D006552 ORTHO05D008023 3.7e-67 259.2 277 58.5
AT5G47790 Arabidopsis thaliana HOM05D006552 ORTHO05D008023 4.1e-66 255.8 272 56.2
BcaNung06819 Brassica carinata HOM05D006552 ORTHO05D008023 7.0e-66 255.0 278 58.3
SHI24428 Sapria himalayana HOM05D002730 ORTHO05D008023 3.5e-65 252.7 260 57.7
AL8G11090 Arabidopsis lyrata HOM05D006552 ORTHO05D008023 1.7e-64 250.4 272 54.8
CARHR216590 Cardamine hirsuta HOM05D006552 ORTHO05D008023 5.0e-64 248.8 274 55.8
Pp3c12_14900 Physcomitrium patens HOM05D006552 ORTHO05D008023 2.3e-61 240.0 302 51.3
Mapoly0092s0040 Marchantia polymorpha HOM05D006552 ORTHO05D008023 5.2e-61 238.8 292 52.7
HPP92_020486 Vanilla planifolia HOM05D006552 ORTHO05D008023 1.3e-59 234.2 170 72.4
Actinidia26617 Actinidia chinensis HOM05D006552 ORTHO05D008023 1.6e-54 217.2 245 53.9
CBR_g31530 Chara braunii HOM05D006552 ORTHO05D008023 2.8e-51 206.5 261 50.2
AagrBONN_evm.TU.Sc2ySwM_228.2576 Anthoceros agrestis HOM05D006552 ORTHO05D008023 1.2e-44 184.5 254 48.4
Atru.chr2.1684 Acer truncatum HOM05D006552 ORTHO05D008023 5.9e-41 172.2 178 57.9
Atru.chr4.798 Acer truncatum HOM05D006552 ORTHO05D008023 2.9e-40 169.9 178 57.3
Oeu057008.1 Olea europaea HOM05D006552 ORTHO05D008023 1.5e-39 167.5 161 64.6
GSVIVG01003475001 Vitis vinifera HOM05D006552 ORTHO05D008023 3.4e-36 156.4 92 89.1
Atru.chr1.2175 Acer truncatum HOM05D006552 ORTHO05D008023 3.0e-32 143.3 94 74.5
CARHR173540 Cardamine hirsuta HOM05D006552 ORTHO05D008023 8.6e-32 141.7 151 53.6
CDE10G1001 Ceratophyllum demersum HOM05D006552 ORTHO05D008023 1.5e-23 114.4 70 80.0
Actinidia02279 Actinidia chinensis HOM05D006552 ORTHO05D008023 2.4e-10 70.5 44 81.8
SGA_v2.0_scaffold186G40138 Striga asiatica HOM05D006552 ORTHO05D008023 1.6e-06 57.8 36 80.6


User provided reference genes

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