Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 0.0e+00 2562.3 1332 100.0
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.9e-203 714.1 1391 38.1
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 3.3e-195 686.8 1410 37.0
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 4.3e-195 686.4 1374 37.6
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 4.1e-185 653.3 1389 36.6
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 4.5e-184 649.8 1457 36.4
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 5.3e-177 626.3 1428 35.9
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 6.9e-177 625.9 1423 36.1
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 2.9e-175 620.5 1445 34.7
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 6.5e-175 619.4 872 47.9
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 1.4e-174 618.2 1401 36.5
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 3.6e-173 613.6 1411 35.2
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 6.1e-173 612.8 1457 33.9
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 1.7e-167 594.7 1497 34.5
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 4.5e-160 570.1 1447 34.2
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 6.1e-157 559.7 1414 33.7
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 3.0e-156 557.4 1451 34.1
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 2.6e-155 554.3 1386 33.4
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 1.7e-154 551.6 1410 33.3
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 2.4e-153 547.7 1394 34.2
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 3.8e-151 540.4 908 40.7
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 8.5e-151 539.3 1563 31.8
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 1.2e-149 535.4 1345 33.2
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 2.1e-149 534.6 1337 33.4
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 1.2e-147 528.9 1236 33.9
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 2.0e-147 528.1 1396 33.8
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 2.2e-146 524.6 1405 33.1
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 4.5e-144 516.9 1411 32.7
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 2.2e-143 514.6 1393 32.7
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 6.8e-140 503.1 1352 33.0
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 5.7e-139 500.0 1397 32.9
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.8e-138 497.7 1380 32.5
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.8e-138 497.7 1399 32.8
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 6.3e-138 496.5 1404 33.2
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 8.3e-138 496.1 1376 32.4
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 1.9e-134 485.0 1395 31.6
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 6.1e-133 479.9 1440 30.6
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 1.4e-132 478.8 1356 30.2
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 2.3e-132 478.0 1383 32.9
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 5.2e-132 476.9 1374 31.4
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 4.4e-131 473.8 1435 30.7
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 3.2e-129 467.6 1399 31.5
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 9.2e-129 466.1 1372 31.5
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 4.3e-126 457.2 1336 32.0
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 3.5e-120 437.6 1399 30.5
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 3.3e-118 431.0 1330 30.6
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 1.1e-116 426.0 1417 31.2
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 3.1e-116 424.5 1413 30.4
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 6.8e-116 423.3 1371 31.2
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.4e-115 421.0 1248 31.4
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 4.4e-115 420.6 1383 29.2
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 4.4e-115 420.6 1422 29.0
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 4.1e-113 414.1 1351 29.9
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 4.1e-113 414.1 1351 29.9
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 1.6e-112 412.1 1424 29.8
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 2.3e-111 408.3 1406 29.9
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 5.1e-111 407.1 1513 29.1
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 1.5e-110 405.6 1351 30.1
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 1.9e-105 388.7 1366 30.8
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 1.6e-104 385.6 344 59.3
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 8.6e-103 379.8 1340 29.6
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 7.3e-102 376.7 950 32.9
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 4.0e-100 370.9 1272 29.5
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 1.5e-99 369.0 1418 30.0
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 2.0e-99 368.6 1345 28.8
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 2.6e-99 368.2 961 33.3
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 9.9e-99 366.3 1344 29.2
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 9.9e-99 366.3 1344 29.2
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.3e-98 365.9 1217 29.5
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 3.8e-98 364.4 1363 27.7
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 3.8e-98 364.4 1345 29.4
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 4.9e-98 364.0 1397 29.1
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 4.2e-97 360.9 1337 28.5
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 1.6e-96 359.0 1351 28.1
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 5.1e-95 354.0 1391 28.3
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 2.8e-93 348.2 1362 27.3
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 2.8e-93 348.2 1425 28.3
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 6.2e-93 347.1 1392 27.2
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 2.4e-92 345.1 1345 28.0
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 1.3e-90 339.3 1348 27.4
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 4.9e-90 337.4 1321 29.0
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 1.4e-89 335.9 1349 28.3
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 5.1e-87 327.4 1568 27.1
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 2.5e-86 325.1 1354 27.8
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 2.5e-86 325.1 1247 29.2
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 1.5e-83 315.8 1391 27.5
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 3.4e-83 314.7 1426 25.7
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 9.3e-81 306.6 1438 25.9
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.2e-80 306.2 1143 29.3
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.7e-80 305.1 1314 27.2
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 2.5e-78 298.5 1395 28.0
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 7.4e-78 297.0 514 37.4
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 7.4e-78 297.0 474 38.8
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 2.1e-77 295.4 496 37.9
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 4.8e-77 294.3 1362 27.2
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 4.9e-74 284.3 1336 26.6
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 3.5e-72 278.1 1388 24.9
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 4.6e-72 277.7 489 37.0
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 4.6e-72 277.7 425 38.8
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 1.8e-71 275.8 1346 25.3
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 1.8e-68 265.8 312 46.5
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 1.5e-67 262.7 513 34.9
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 1.6e-61 242.7 454 36.1
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 1.1e-60 240.0 275 48.4
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 3.1e-60 238.4 490 33.5
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 1.2e-59 236.5 1404 27.0
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 7.2e-57 227.3 1337 25.4
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 3.6e-56 224.9 403 37.5
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.5e-54 219.5 279 44.8
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.0e-54 219.2 804 30.3
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.9e-41 176.0 331 40.2
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 3.6e-40 171.8 154 57.1
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 3.3e-38 165.2 377 37.7
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 4.7e-32 144.8 253 41.1
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 6.1e-32 144.4 146 49.3
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 1.2e-30 140.2 460 30.4
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 9.1e-28 130.6 132 51.5
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.0e-27 129.4 339 33.3
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 1.1e-25 123.6 146 41.8
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 1.3e-21 110.2 126 46.8
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 6.3e-21 107.8 287 34.5
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 1.7e-18 99.8 261 32.2
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.5e-17 95.9 560 27.0
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 1.3e-13 83.6 99 40.4
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 3.7e-13 82.0 117 48.7
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 3.7e-13 82.0 117 48.7
CDE02G3322 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 4.9e-13 81.6 113 46.0
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 4.9e-13 81.6 156 39.1
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.8e-12 79.7 111 54.1
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 3.2e-12 79.0 260 26.5
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 4.6e-11 75.1 116 41.4
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 4.6e-11 75.1 121 38.0
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 5.9e-11 74.7 111 49.5
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 4.3e-09 68.6 91 48.4
SEGI_34464 Sequoiadendron giganteum HOM05D005171 ORTHO05D030606 5.6e-09 68.2 151 29.1
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 7.3e-09 67.8 164 34.8
Actinidia12354 Actinidia chinensis HOM05D005171 ORTHO05D006343 4.7e-08 65.1 64 56.2
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 4.7e-08 65.1 105 39.0
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 6.8e-07 61.2 117 38.5
A03p44260 Brassica napus HOM05D005171 ORTHO05D041371 8.9e-07 60.8 85 37.6
BraA03t13556Z Brassica rapa HOM05D005171 ORTHO05D041371 8.9e-07 60.8 85 37.6
Glyma.07G011650 Glycine max HOM05D005171 ORTHO05D006343 1.5e-06 60.1 82 34.1


User provided reference genes

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