Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 3.7e-91 338.2 172 100.0
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 5.1e-72 274.6 170 80.0
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 6.6e-72 274.2 166 79.5
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 8.6e-72 273.9 171 81.9
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 7.3e-71 270.8 171 79.5
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 9.5e-71 270.4 174 77.6
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 9.5e-71 270.4 172 79.1
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.2e-70 270.0 172 79.7
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 2.8e-70 268.9 173 76.3
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 6.2e-70 267.7 171 78.9
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 1.1e-69 266.9 168 76.8
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.1e-69 265.4 172 76.7
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 4.0e-69 265.0 170 77.1
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 5.2e-69 264.6 171 76.6
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.2e-69 264.6 172 76.2
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.2e-69 264.6 172 76.2
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.2e-69 264.6 172 76.2
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 6.8e-69 264.2 171 78.4
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 2.0e-68 262.7 177 74.6
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.0e-68 262.7 177 76.8
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 3.4e-68 261.9 174 75.9
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 7.6e-68 260.8 174 75.3
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 7.6e-68 260.8 180 72.8
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 9.9e-68 260.4 173 78.0
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 9.9e-68 260.4 170 75.9
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 9.9e-68 260.4 156 80.1
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.3e-67 260.0 173 77.5
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 3.8e-67 258.5 177 74.6
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 4.9e-67 258.1 172 73.3
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 8.4e-67 257.3 172 74.4
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.9e-66 256.1 200 68.5
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 2.4e-66 255.8 177 71.8
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 2.4e-66 255.8 170 74.1
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 3.2e-66 255.4 172 74.4
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 3.2e-66 255.4 173 75.7
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 3.2e-66 255.4 160 76.2
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 5.4e-66 254.6 172 72.7
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.4e-66 254.6 200 68.0
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.4e-66 254.6 200 68.0
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 7.1e-66 254.2 170 74.7
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 7.1e-66 254.2 172 75.0
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 9.2e-66 253.8 173 74.6
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 9.2e-66 253.8 162 76.5
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.2e-65 253.4 170 72.9
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.6e-65 253.1 172 73.8
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 2.1e-65 252.7 173 75.1
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.7e-65 252.3 170 72.4
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 2.7e-65 252.3 168 75.6
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 2.7e-65 252.3 163 76.7
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 2.7e-65 252.3 168 79.2
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 2.7e-65 252.3 172 73.8
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 2.7e-65 252.3 195 69.7
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 3.5e-65 251.9 170 72.4
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 4.6e-65 251.5 170 72.4
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 6.0e-65 251.1 170 74.7
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 6.0e-65 251.1 170 75.9
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 6.0e-65 251.1 172 73.8
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 7.8e-65 250.8 177 71.2
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 7.8e-65 250.8 170 72.4
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 7.8e-65 250.8 172 73.8
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.0e-64 250.4 157 78.3
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 1.0e-64 250.4 170 73.5
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.3e-64 250.0 170 71.8
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.3e-64 250.0 168 72.6
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.7e-64 249.6 170 71.8
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 1.7e-64 249.6 174 70.7
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.7e-64 249.6 173 72.8
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 2.3e-64 249.2 170 71.8
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 2.3e-64 249.2 172 73.3
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 3.0e-64 248.8 170 71.8
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 3.0e-64 248.8 170 71.8
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 3.0e-64 248.8 170 71.2
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 3.9e-64 248.4 162 77.8
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 3.9e-64 248.4 170 71.2
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 5.1e-64 248.1 170 71.2
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 5.1e-64 248.1 170 71.2
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 5.1e-64 248.1 170 71.2
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 5.1e-64 248.1 171 72.5
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.1e-64 248.1 162 77.2
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 6.6e-64 247.7 168 71.4
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.6e-64 247.7 162 76.5
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.1e-63 246.9 173 72.8
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.1e-63 246.9 162 76.5
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.1e-63 246.9 170 70.0
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.9e-63 246.1 162 73.5
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.9e-63 246.1 162 73.5
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.9e-63 246.1 162 73.5
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.9e-63 246.1 162 77.2
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 3.3e-63 245.4 168 72.0
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.3e-63 245.0 170 70.0
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 4.3e-63 245.0 180 70.0
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 5.6e-63 244.6 170 72.9
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 7.3e-63 244.2 170 71.2
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 9.6e-63 243.8 170 71.8
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.6e-62 243.0 207 63.3
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 2.1e-62 242.7 171 70.2
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 8.1e-62 240.7 157 75.8
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 2.4e-61 239.2 164 73.2
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.9e-61 237.7 162 75.9
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 9.0e-61 237.3 166 72.9
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 2.0e-60 236.1 180 68.9
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 2.0e-60 236.1 160 71.9
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.1e-58 230.3 211 59.2
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.4e-58 229.9 164 66.5
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 4.2e-58 228.4 175 69.1
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 2.1e-57 226.1 172 67.4
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.6e-57 224.9 139 79.1
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.6e-57 224.9 209 62.2
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 1.7e-56 223.0 188 64.9
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 3.0e-56 222.2 141 74.5
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 6.6e-56 221.1 171 64.9
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 5.6e-55 218.0 109 100.0
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.8e-53 213.0 224 52.2
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 2.4e-53 212.6 174 65.5
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 3.1e-53 212.2 186 62.9
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 2.6e-52 209.1 255 47.1
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 3.8e-51 205.3 120 80.8
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.1e-46 189.5 168 59.5
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 3.1e-45 185.7 113 78.8
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 3.2e-42 175.6 171 58.5
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 8.7e-40 167.5 143 57.3
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 1.6e-38 163.3 153 50.3
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 6.9e-37 157.9 116 65.5
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 2.6e-36 156.0 119 67.2
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.3e-35 153.7 105 70.5
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 1.3e-35 153.7 95 75.8
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 4.9e-35 151.8 107 65.4
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 7.1e-34 147.9 140 48.6
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 6.7e-32 141.4 107 66.4
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.1e-29 134.0 90 72.2
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 6.9e-29 131.3 112 60.7
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 2.2e-27 126.3 99 68.7
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.0e-24 117.5 104 59.6
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 1.3e-24 117.1 81 66.7
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 1.3e-24 117.1 81 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 1.3e-22 110.5 145 36.6
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.7e-22 110.2 82 67.1
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.2e-22 109.8 99 58.6
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 4.8e-22 108.6 110 41.8
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 4.8e-22 108.6 69 76.8
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 6.9e-21 104.8 104 44.2
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 1.2e-20 104.0 63 81.0
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.3e-19 100.5 90 53.3
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 6.5e-19 98.2 72 65.3
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 8.5e-19 97.8 59 81.4
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 6.1e-17 91.7 106 40.6
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 3.0e-16 89.4 57 77.2
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 7.4e-15 84.7 47 85.1
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 1.3e-14 84.0 136 36.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.0e-11 74.3 104 46.2
Nn1g07676 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.7e-06 57.0 29 100.0
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 8.2e-06 54.7 31 83.9


User provided reference genes

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