Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 2.4e-90 335.5 170 100.0
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.7e-64 249.6 168 76.8
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 5.0e-64 248.1 170 74.7
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 6.5e-64 247.7 170 76.5
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 6.5e-64 247.7 170 74.7
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 5.7e-60 234.6 159 76.1
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 8.3e-59 230.7 169 73.4
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 2.7e-57 225.7 174 73.0
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 1.0e-56 223.8 169 72.8
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 1.3e-56 223.4 173 72.8
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 1.3e-56 223.4 169 72.2
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 1.3e-56 223.4 169 69.8
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 1.7e-56 223.0 171 71.3
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.7e-56 223.0 171 73.1
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 5.0e-56 221.5 171 72.5
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 6.6e-56 221.1 171 72.5
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 6.6e-56 221.1 166 73.5
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.1e-55 220.3 171 72.5
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 1.1e-55 220.3 174 68.4
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 1.1e-55 220.3 170 70.6
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 1.1e-55 220.3 172 70.9
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 2.5e-55 219.2 168 70.8
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 7.3e-55 217.6 171 70.8
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 7.3e-55 217.6 171 73.1
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 7.3e-55 217.6 171 73.1
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 9.5e-55 217.2 171 70.8
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 9.5e-55 217.2 168 70.8
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 9.5e-55 217.2 168 70.8
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 1.2e-54 216.9 169 69.8
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 1.2e-54 216.9 171 73.1
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 2.1e-54 216.1 168 71.4
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 2.1e-54 216.1 171 73.1
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 2.1e-54 216.1 170 68.8
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 2.8e-54 215.7 173 68.2
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 2.8e-54 215.7 171 72.5
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 2.8e-54 215.7 170 68.2
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 3.6e-54 215.3 169 68.6
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 3.6e-54 215.3 171 70.8
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 4.7e-54 214.9 169 69.8
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 6.1e-54 214.5 170 69.4
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 8.0e-54 214.2 169 69.2
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 8.0e-54 214.2 170 70.0
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 8.0e-54 214.2 173 71.7
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 1.8e-53 213.0 169 69.8
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 2.3e-53 212.6 169 70.4
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 2.3e-53 212.6 173 68.8
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 3.0e-53 212.2 169 72.8
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 3.0e-53 212.2 169 69.2
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 4.0e-53 211.8 169 68.0
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 4.0e-53 211.8 171 70.2
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 5.2e-53 211.5 171 67.8
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 6.8e-53 211.1 167 70.7
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 8.9e-53 210.7 167 70.7
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 1.5e-52 209.9 170 69.4
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.5e-52 209.9 164 68.3
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 2.0e-52 209.5 173 70.5
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 2.6e-52 209.1 167 68.9
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 2.6e-52 209.1 170 70.6
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 2.6e-52 209.1 155 73.5
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 4.4e-52 208.4 170 69.4
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 4.4e-52 208.4 168 65.5
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 7.5e-52 207.6 169 67.5
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 9.8e-52 207.2 169 67.5
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 9.8e-52 207.2 170 68.8
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 9.8e-52 207.2 170 68.8
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 1.3e-51 206.8 169 68.6
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 1.3e-51 206.8 169 68.6
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 1.3e-51 206.8 169 68.6
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 1.3e-51 206.8 169 68.6
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 1.3e-51 206.8 169 68.6
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 2.2e-51 206.1 169 68.6
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 2.2e-51 206.1 169 68.6
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 2.2e-51 206.1 169 68.6
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 2.2e-51 206.1 160 73.1
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 2.9e-51 205.7 169 68.6
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 2.9e-51 205.7 169 68.6
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 2.9e-51 205.7 169 68.6
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 2.9e-51 205.7 170 67.6
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 2.9e-51 205.7 102 97.1
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 4.9e-51 204.9 156 73.7
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 4.9e-51 204.9 155 72.9
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 6.4e-51 204.5 169 65.1
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 1.1e-50 203.8 170 68.8
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 1.4e-50 203.4 169 68.0
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 1.4e-50 203.4 169 68.0
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 1.8e-50 203.0 171 66.1
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 3.2e-50 202.2 169 63.9
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 3.2e-50 202.2 170 67.6
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 4.1e-50 201.8 170 65.3
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 5.4e-50 201.4 169 66.3
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 7.0e-50 201.1 169 65.7
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 9.2e-50 200.7 143 75.5
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 9.2e-50 200.7 174 65.5
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 1.2e-49 200.3 169 66.9
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 1.2e-49 200.3 149 72.5
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 1.2e-49 200.3 172 66.3
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 4.6e-49 198.4 174 66.1
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 5.9e-49 198.0 174 64.9
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 1.7e-48 196.4 169 65.1
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 2.3e-48 196.1 157 68.2
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 5.0e-48 194.9 169 64.5
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 8.6e-48 194.1 112 85.7
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 1.1e-47 193.7 123 80.5
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 2.5e-47 192.6 101 93.1
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 2.5e-47 192.6 101 93.1
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 4.3e-47 191.8 150 69.3
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 6.2e-46 188.0 125 76.0
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.4e-45 186.8 163 66.9
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 8.9e-45 184.1 129 72.1
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 2.0e-44 183.0 171 60.2
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 1.7e-43 179.9 154 63.6
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 1.9e-42 176.4 101 83.2
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 4.1e-42 175.3 101 83.2
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 3.3e-39 165.6 169 59.8
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 3.6e-38 162.2 171 57.3
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 6.4e-35 151.4 97 71.1
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 1.9e-34 149.8 140 55.0
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 4.1e-34 148.7 140 52.1
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 4.6e-33 145.2 94 72.3
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 3.0e-32 142.5 169 52.1
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 1.5e-31 140.2 117 59.8
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 7.3e-31 137.9 171 46.2
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 4.4e-28 128.6 72 84.7
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 6.9e-21 104.8 139 48.9
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 8.9e-21 104.4 90 55.6
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 2.7e-17 92.8 53 86.8
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 6.0e-17 91.7 51 88.2
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 6.0e-17 91.7 51 88.2
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 1.0e-16 90.9 128 43.0
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 5.8e-12 75.1 121 38.8


User provided reference genes

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