Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 4.8e-140 501.1 250 100.0
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 9.2e-115 417.2 248 82.7
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.7e-108 396.4 247 76.1
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 8.3e-108 394.0 248 76.2
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 5.4e-107 391.3 250 73.2
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 9.2e-107 390.6 247 74.5
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 6.0e-106 387.9 250 73.6
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 1.0e-105 387.1 251 72.9
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 3.9e-105 385.2 250 72.0
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 8.6e-105 384.0 243 73.3
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.1e-104 383.6 250 74.8
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 1.9e-104 382.9 250 71.2
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 2.5e-104 382.5 246 73.2
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 3.3e-104 382.1 250 75.2
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 5.6e-104 381.3 250 71.2
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 7.3e-104 380.9 250 71.2
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 1.6e-103 379.8 243 72.4
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 1.6e-103 379.8 246 73.6
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 3.6e-103 378.6 243 74.1
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 3.6e-103 378.6 251 70.1
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 6.2e-103 377.9 250 72.8
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 6.2e-103 377.9 243 73.7
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 8.1e-103 377.5 247 74.1
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 1.4e-102 376.7 250 74.0
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 3.1e-102 375.6 250 74.0
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 6.8e-102 374.4 247 73.7
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 6.8e-102 374.4 243 73.7
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 3.4e-101 372.1 251 72.9
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 2.2e-100 369.4 250 72.0
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 2.2e-100 369.4 248 73.8
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 1.9e-99 366.3 249 71.1
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 2.4e-99 365.9 250 73.2
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.2e-98 363.6 243 71.2
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 7.8e-98 360.9 243 69.5
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 1.0e-97 360.5 250 69.2
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.0e-97 360.5 250 70.0
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.3e-97 359.4 250 69.6
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 5.1e-97 358.2 248 71.0
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 6.6e-97 357.8 245 70.6
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 1.1e-96 357.1 245 69.4
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 1.1e-96 357.1 250 69.2
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 1.9e-96 356.3 247 70.4
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.9e-96 356.3 242 72.3
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 3.3e-96 355.5 243 71.2
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 3.3e-96 355.5 250 69.2
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 5.6e-96 354.8 243 69.1
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 1.2e-95 353.6 250 68.8
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 2.1e-95 352.8 247 70.0
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 2.8e-95 352.4 240 70.4
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 2.3e-94 349.4 241 69.7
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 3.1e-94 349.0 245 69.0
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 6.8e-94 347.8 245 69.8
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 6.8e-94 347.8 245 68.6
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 6.8e-94 347.8 243 69.5
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 8.9e-94 347.4 250 69.2
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 1.2e-93 347.1 242 70.2
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 2.6e-93 345.9 281 61.9
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 2.6e-93 345.9 274 63.1
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 3.4e-93 345.5 245 67.3
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 7.6e-93 344.4 245 69.0
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 9.9e-93 344.0 248 66.5
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 9.9e-93 344.0 245 70.6
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 1.3e-92 343.6 245 68.2
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 4.1e-91 338.6 246 65.9
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 4.1e-91 338.6 245 65.3
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 9.2e-91 337.4 250 68.8
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.6e-90 336.7 250 66.8
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 2.7e-90 335.9 245 65.3
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 6.0e-90 334.7 245 66.1
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.0e-89 334.0 250 67.6
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 3.9e-89 332.0 218 72.9
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 8.6e-89 330.9 250 66.4
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.5e-88 330.1 245 66.1
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.5e-88 330.1 245 66.1
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 1.5e-88 330.1 245 63.3
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 1.9e-88 329.7 223 74.0
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.9e-88 329.7 243 65.8
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 5.6e-88 328.2 245 63.7
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 1.6e-87 326.6 249 62.7
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 2.8e-87 325.9 250 64.4
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.1e-86 323.9 249 63.5
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 1.4e-86 323.6 249 63.1
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 5.2e-86 321.6 216 72.7
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 5.8e-85 318.2 206 73.3
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 3.8e-84 315.5 205 72.7
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 3.8e-84 315.5 246 62.6
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 1.2e-82 310.5 200 72.5
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 7.8e-82 307.8 206 71.4
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 3.0e-81 305.8 196 72.4
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 3.0e-81 305.8 259 62.5
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 7.3e-80 301.2 243 62.6
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 6.2e-79 298.1 273 58.2
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 3.1e-78 295.8 192 72.9
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.5e-77 293.5 242 62.8
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 2.6e-77 292.7 216 64.4
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 3.4e-77 292.4 216 63.4
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.4e-75 286.2 193 72.0
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 7.9e-74 281.2 217 63.6
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 7.9e-74 281.2 217 62.7
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 7.9e-74 281.2 217 62.7
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 3.0e-73 279.3 245 55.1
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 3.9e-73 278.9 217 62.7
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 1.9e-72 276.6 182 73.1
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 9.6e-72 274.2 243 58.0
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 8.1e-71 271.2 244 53.7
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 8.1e-71 271.2 196 72.4
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 1.8e-70 270.0 232 60.8
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.1e-70 269.2 243 54.7
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.0e-70 268.9 247 53.4
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 5.3e-70 268.5 244 54.1
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 1.5e-69 266.9 196 67.9
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 5.8e-69 265.0 248 57.7
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 1.0e-65 254.2 183 66.7
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 3.0e-65 252.7 244 56.6
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 3.9e-65 252.3 164 73.2
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.8e-63 246.1 233 52.4
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.7e-60 236.9 202 59.9
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 3.8e-60 235.7 166 66.9
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 4.9e-60 235.3 198 61.6
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-58 230.3 218 52.3
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.6e-58 228.8 218 53.2
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 4.6e-58 228.8 244 54.9
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 5.7e-56 221.9 142 72.5
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 2.1e-55 219.9 179 62.0
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 4.1e-54 215.7 216 49.1
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 1.2e-53 214.2 227 52.0
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 7.2e-51 204.9 172 62.8
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 4.6e-50 202.2 166 63.9
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 5.1e-49 198.7 199 51.3
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 1.1e-48 197.6 137 70.1
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 1.6e-47 193.7 237 47.3
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 6.3e-47 191.8 194 52.6
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 7.7e-45 184.9 119 75.6
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 1.0e-44 184.5 193 51.8
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.4e-38 164.1 219 39.7
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.2e-37 161.0 104 75.0
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.5e-37 160.6 106 68.9
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 5.0e-36 155.6 108 69.4
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 6.5e-36 155.2 103 69.9
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 5.5e-35 152.1 110 69.1
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 1.5e-32 144.1 215 42.3
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 9.1e-30 134.8 161 47.2
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.6e-21 107.5 90 56.7
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.0e-21 107.1 161 37.9
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 8.0e-18 95.1 65 69.2
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.0e-17 94.7 67 68.7
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 9.8e-16 88.2 376 23.4
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 4.1e-14 82.8 72 55.6
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 9.1e-14 81.6 86 46.5
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.5e-13 79.7 55 61.8
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.6e-08 63.5 44 61.4


User provided reference genes

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