Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 8.3e-222 773.5 413 100.0
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.9e-157 559.7 415 74.5
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.1e-128 464.2 423 66.4
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 2.9e-121 439.5 422 64.2
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.9e-121 438.7 402 66.2
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 3.2e-120 436.0 435 63.0
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 4.6e-119 432.2 350 72.3
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 8.6e-118 427.9 435 62.1
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 8.9e-115 417.9 419 62.3
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 8.3e-113 411.4 338 68.9
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.7e-111 406.4 420 61.4
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.0e-110 402.9 397 62.5
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 2.5e-109 399.8 424 59.9
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 3.1e-107 392.9 408 58.8
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 2.6e-106 389.8 428 59.6
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 7.5e-106 388.3 416 58.9
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 2.9e-105 386.3 410 59.8
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 6.4e-105 385.2 423 59.6
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 6.4e-105 385.2 410 58.8
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 9.2e-104 381.3 419 58.5
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 4.6e-103 379.0 413 57.4
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 3.9e-102 375.9 409 58.4
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 3.9e-102 375.9 418 58.1
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.5e-101 374.0 420 57.6
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 7.3e-101 371.7 420 58.1
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 9.5e-101 371.3 419 57.5
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 6.2e-100 368.6 424 55.2
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.1e-99 367.9 423 56.5
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.4e-99 367.5 416 57.0
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 2.0e-98 363.6 418 56.2
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 7.6e-98 361.7 415 56.4
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 3.7e-97 359.4 354 62.4
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 4.9e-97 359.0 418 54.8
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.9e-96 357.1 430 54.9
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.1e-96 355.9 429 54.5
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 4.6e-95 352.4 324 61.1
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.0e-94 349.7 272 76.1
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.0e-94 349.7 272 76.1
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 2.5e-93 346.7 430 53.0
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.6e-93 344.7 322 66.8
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 4.7e-92 342.4 414 53.4
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 6.2e-92 342.0 335 64.5
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 1.4e-91 340.9 416 53.6
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.8e-91 340.5 418 54.5
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 4.0e-91 339.3 412 52.4
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 5.2e-91 339.0 425 52.0
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 8.9e-91 338.2 409 55.0
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 2.0e-90 337.0 421 53.7
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 2.0e-90 337.0 419 53.9
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 3.4e-90 336.3 420 53.3
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 3.4e-90 336.3 421 54.2
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.9e-89 333.2 379 55.9
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 8.4e-89 331.6 346 59.0
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.1e-88 331.3 355 58.6
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.4e-88 330.9 355 57.7
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.4e-88 330.1 379 55.4
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 2.4e-88 330.1 418 51.9
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 5.4e-88 328.9 356 60.1
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 5.4e-88 328.9 424 54.2
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 1.6e-87 327.4 413 52.8
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.6e-87 327.4 379 55.4
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 3.5e-87 326.2 412 52.4
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 3.5e-87 326.2 378 55.6
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 4.6e-87 325.9 354 57.6
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.0e-86 324.7 414 55.6
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 2.5e-85 320.1 406 53.7
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.3e-84 317.8 416 51.9
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 3.6e-84 316.2 354 55.9
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 4.8e-84 315.8 412 52.7
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 4.8e-84 315.8 329 57.1
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.4e-83 313.5 423 49.9
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 9.0e-83 311.6 415 51.3
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 3.4e-82 309.7 416 50.7
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.2e-81 307.0 390 51.8
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 3.8e-81 306.2 290 61.7
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 5.4e-80 302.4 410 50.5
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.6e-79 300.8 413 48.7
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 2.3e-78 297.0 417 48.7
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 5.1e-78 295.8 416 49.0
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 2.8e-76 290.0 422 46.9
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.8e-76 290.0 420 47.1
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 8.1e-76 288.5 420 46.4
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.4e-75 287.7 386 50.5
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 1.8e-75 287.3 412 50.0
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.1e-75 286.6 410 50.2
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 2.0e-74 283.9 405 49.4
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 4.5e-74 282.7 419 51.1
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 4.5e-74 282.7 414 48.6
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 7.6e-74 282.0 413 48.2
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.3e-73 281.2 413 47.7
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 2.9e-73 280.0 420 48.3
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 3.2e-72 276.6 414 48.8
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.1e-71 273.9 355 54.1
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 2.7e-71 273.5 428 46.3
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.3e-70 271.2 431 45.9
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 3.0e-70 270.0 433 46.7
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 3.0e-70 270.0 436 45.6
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.4e-67 261.2 410 47.8
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 6.9e-67 258.8 405 46.4
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.2e-66 258.1 425 44.5
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 6.5e-65 252.3 409 46.7
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 6.0e-63 245.7 423 44.7
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 3.9e-62 243.0 277 59.2
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 5.7e-61 239.2 307 54.7
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.8e-59 234.2 365 44.7
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 3.1e-59 233.4 315 50.2
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.2e-58 231.5 396 45.7
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 1.5e-58 231.1 396 46.5
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 1.5e-58 231.1 396 45.2
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 1.5e-58 231.1 396 45.2
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.5e-58 231.1 396 45.2
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 2.0e-58 230.7 396 45.5
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 1.0e-57 228.4 396 46.0
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.0e-57 228.4 337 49.3
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 1.0e-57 228.4 337 49.3
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.9e-57 226.9 415 42.7
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 3.8e-57 226.5 341 49.3
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 8.5e-57 225.3 351 45.0
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 2.5e-56 223.8 274 54.0
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 7.2e-56 222.2 344 48.5
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 7.4e-53 212.2 411 44.3
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 4.8e-52 209.5 215 58.1
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 4.5e-50 203.0 189 61.4
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.9e-49 200.3 383 42.3
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-46 190.7 203 63.1
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-46 190.7 203 63.1
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.1e-43 179.9 215 58.1
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 2.6e-42 177.2 400 36.8
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 2.2e-41 174.1 401 35.9
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.7e-39 167.2 255 47.1
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 3.6e-39 166.8 192 55.7
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 3.7e-36 156.8 105 75.2
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.4e-35 154.8 253 48.2
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 5.9e-34 149.4 308 40.6
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.0e-33 148.7 205 52.2
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.2e-33 147.5 205 52.2
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.9e-33 147.1 205 51.7
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.9e-33 147.1 205 51.7
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.8e-33 146.7 205 51.7
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-32 145.2 205 51.2
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 1.4e-30 138.3 118 70.3
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-30 136.3 127 57.5
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.7e-26 122.5 205 46.3
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 3.8e-25 120.2 199 44.2
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 1.6e-23 114.8 217 44.2
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.7e-17 94.7 101 61.4
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 2.0e-13 81.3 73 65.8
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 9.8e-13 79.0 183 33.9
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.7e-12 78.2 159 40.9
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 1.3e-09 68.6 145 35.2
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 8.6e-09 65.9 76 53.9
MBI19_g45746_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.9e-08 64.7 70 55.7
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 9.5e-08 62.4 80 51.2
AagrBONN_evm.TU.Sc2ySwM_117.2428 Anthoceros agrestis HOM05D025386 ORTHO05D026614 1.6e-07 61.6 130 35.4
SEGI_33504 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.0e-06 58.9 123 32.5


User provided reference genes

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