Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 4.0e-66 254.6 126 100.0
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 1.7e-40 169.5 127 71.7
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 2.6e-33 145.6 127 61.4
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 7.1e-31 137.5 126 58.7
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 4.3e-28 128.3 127 55.9
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 9.6e-28 127.1 127 55.1
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 4.0e-26 121.7 127 53.5
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 4.0e-26 121.7 127 53.5
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 3.4e-25 118.6 126 57.9
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 3.4e-25 118.6 126 57.9
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.9e-24 115.5 126 51.6
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 4.9e-24 114.8 127 54.3
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 6.4e-24 114.4 126 50.8
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 1.9e-23 112.8 127 55.9
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.4e-23 112.5 129 52.7
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 3.2e-23 112.1 134 53.7
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.2e-23 111.7 127 55.9
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.4e-23 111.3 127 55.9
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.2e-22 110.2 129 51.2
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.1e-22 109.4 127 54.3
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 4.6e-22 108.2 130 52.3
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 4.6e-22 108.2 131 48.9
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 3.9e-21 105.1 136 45.6
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.1e-20 103.6 134 46.3
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 1.1e-20 103.6 131 48.1
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 2.5e-20 102.4 131 48.1
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.3e-20 101.7 127 52.8
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 4.3e-20 101.7 127 52.8
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 1.3e-19 100.1 140 52.1
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.1e-19 99.4 127 47.2
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.1e-19 99.4 127 47.2
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.1e-19 99.4 127 50.4
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 6.2e-19 97.8 137 46.0
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 8.1e-19 97.4 127 49.6
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 1.1e-18 97.1 131 47.3
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.4e-18 96.7 127 47.2
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.4e-18 95.9 127 47.2
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.4e-18 95.9 127 47.2
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 1.2e-17 93.6 167 42.5
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 1.2e-17 93.6 136 47.1
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.5e-17 93.2 139 48.2
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.0e-17 92.8 128 48.4
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 2.0e-17 92.8 129 49.6
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 2.6e-17 92.4 141 43.3
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.6e-17 92.4 137 43.8
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 3.4e-17 92.0 137 45.3
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 4.4e-17 91.7 138 50.0
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 5.8e-17 91.3 133 46.6
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 5.8e-17 91.3 132 49.2
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 5.8e-17 91.3 138 43.5
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 7.6e-17 90.9 135 41.5
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 9.9e-17 90.5 131 50.4
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 1.7e-16 89.7 133 44.4
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 1.7e-16 89.7 140 44.3
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.2e-16 89.4 133 47.4
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 6.4e-16 87.8 140 42.9
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.1e-15 87.0 133 45.1
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.1e-15 87.0 130 44.6
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.1e-15 87.0 126 46.0
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.4e-15 86.7 130 44.6
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 1.9e-15 86.3 131 44.3
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.1e-15 84.3 141 44.0
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 7.1e-15 84.3 143 43.4
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 9.3e-15 84.0 132 43.2
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 9.3e-15 84.0 142 46.5
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.6e-14 83.2 105 45.7
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.6e-14 83.2 142 43.0
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 2.1e-14 82.8 126 45.2
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.7e-14 82.4 128 43.0
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 3.5e-14 82.0 128 41.4
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 6.0e-14 81.3 134 46.3
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 7.9e-14 80.9 128 40.6
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 7.9e-14 80.9 136 41.9
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 2.3e-13 79.3 136 41.9
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 3.9e-13 78.6 139 41.7
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 5.1e-13 78.2 132 43.2
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 5.1e-13 78.2 139 43.9
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 6.6e-13 77.8 129 41.1
Phvul.008G285200 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 6.6e-13 77.8 127 42.5
CSS0019001 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 8.7e-13 77.4 138 41.3
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 8.7e-13 77.4 127 40.9
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 1.1e-12 77.0 137 43.8
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 1.5e-12 76.6 126 37.3
Sed0024469 Sechium edule HOM05D004793 ORTHO05D004423 1.5e-12 76.6 128 41.4
Sed0008787 Sechium edule HOM05D004793 ORTHO05D004423 1.9e-12 76.3 129 42.6
Gorai.002G096900 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.5e-12 75.9 97 48.5
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 3.3e-12 75.5 137 43.1
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 4.3e-12 75.1 122 44.3
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 4.3e-12 75.1 122 44.3
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 4.3e-12 75.1 122 44.3
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 4.3e-12 75.1 122 44.3
Eucgr.A01045 Eucalyptus grandis HOM05D004793 ORTHO05D004423 5.6e-12 74.7 137 43.1
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 7.4e-12 74.3 142 40.8
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 7.4e-12 74.3 122 45.1
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 7.4e-12 74.3 122 43.4
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 1.6e-11 73.2 132 43.2
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.1e-11 72.8 135 43.0
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 2.1e-11 72.8 136 43.4
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 2.1e-11 72.8 137 39.4
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 2.8e-11 72.4 155 42.6
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.8e-11 72.4 142 38.0
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 4.8e-11 71.6 157 40.1
Oeu057608.1 Olea europaea HOM05D004793 ORTHO05D004423 4.8e-11 71.6 128 42.2
Oeu064364.1 Olea europaea HOM05D004793 ORTHO05D004423 4.8e-11 71.6 128 42.2
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 4.8e-11 71.6 142 40.1
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 4.8e-11 71.6 153 38.6
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 6.2e-11 71.2 149 38.9
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 8.1e-11 70.9 142 38.0
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 8.1e-11 70.9 150 37.3
Lsat_1_v5_gn_5_121620 Lactuca sativa HOM05D004793 ORTHO05D004423 1.1e-10 70.5 132 39.4
ATR0712G036 Amborella trichopoda HOM05D004793 ORTHO05D004423 2.4e-10 69.3 134 39.6
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.4e-10 69.3 139 41.0
SalBow7G3719 Salvia bowleyana HOM05D004793 ORTHO05D004423 2.4e-10 69.3 129 41.1
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 3.1e-10 68.9 132 40.2
DCAR_019706 Daucus carota HOM05D004793 ORTHO05D004423 4.0e-10 68.6 138 39.9
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 4.0e-10 68.6 154 39.6
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 5.3e-10 68.2 137 40.1
Os03g0593100 Oryza sativa ssp. japonica HOM05D004793 ORTHO05D004423 9.0e-10 67.4 142 37.3
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 1.2e-09 67.0 126 41.3
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 1.2e-09 67.0 126 41.3
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 1.2e-09 67.0 163 38.0
MELO3C024110.2 Cucumis melo HOM05D004793 ORTHO05D004423 1.5e-09 66.6 129 40.3
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 2.0e-09 66.2 143 39.9
HPP92_014035 Vanilla planifolia HOM05D004793 ORTHO05D004423 2.0e-09 66.2 127 41.7
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 2.6e-09 65.9 138 37.7
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 3.4e-09 65.5 71 53.5
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 5.8e-09 64.7 131 39.7
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 9.9e-09 63.9 141 36.9
ECA234G3783 Erigeron canadensis HOM05D004793 ORTHO05D004423 1.3e-08 63.5 158 31.6
Os03g0196250 Oryza sativa ssp. japonica HOM05D020977 ORTHO05D030367 1.3e-08 63.5 148 37.8
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 1.3e-08 63.5 148 37.2
HPP92_023588 Vanilla planifolia HOM05D020977 ORTHO05D004423 1.7e-08 63.2 130 37.7
CAN.G294.21 Capsicum annuum HOM05D004793 ORTHO05D004423 2.2e-08 62.8 134 38.8
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 2.2e-08 62.8 154 32.5
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 2.9e-08 62.4 165 35.2
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.9e-08 62.4 152 38.2
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.8e-08 62.0 152 36.8
Haze_12687 Corylus avellana HOM05D004793 ORTHO05D004423 4.9e-08 61.6 143 37.8
Rhsim04G0038500 Rhododendron simsii HOM05D004793 ORTHO05D004423 4.9e-08 61.6 131 42.0
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 4.9e-08 61.6 131 36.6
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 6.4e-08 61.2 138 40.6
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 6.4e-08 61.2 153 37.9
FvH4_3g00610 Fragaria vesca HOM05D020126 ORTHO05D004423 1.1e-07 60.5 156 39.1
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 1.4e-07 60.1 97 46.4
Oeu029974.1 Olea europaea HOM05D027131 ORTHO05D013900 1.4e-07 60.1 41 73.2
CDE04G0094 Ceratophyllum demersum HOM05D004793 ORTHO05D004423 1.9e-07 59.7 37 81.1
Oeu063642.1 Olea europaea HOM05D004793 ORTHO05D004423 1.9e-07 59.7 132 36.4
Cc02_g34950 Coffea canephora HOM05D004793 ORTHO05D004423 2.4e-07 59.3 140 35.0
Cc09_g04750 Coffea canephora HOM05D004793 ORTHO05D004423 2.4e-07 59.3 131 34.4
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 2.4e-07 59.3 164 35.4
AT4G16447 Arabidopsis thaliana HOM05D010379 ORTHO05D012419 3.2e-07 58.9 127 35.4
ClCG02G002720 Citrullus lanatus HOM05D000222 ORTHO05D003997 3.2e-07 58.9 54 61.1
FAN21G1828 Fragaria x ananassa HOM05D020126 ORTHO05D004423 3.2e-07 58.9 156 39.1
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 4.2e-07 58.5 129 37.2
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 5.5e-07 58.2 126 40.5
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 5.5e-07 58.2 162 37.7
HPP92_012227 Vanilla planifolia HOM05D004793 ORTHO05D004423 7.1e-07 57.8 122 34.4
CsaV3_7G023710 Cucumis sativus L. HOM05D004793 ORTHO05D004423 9.3e-07 57.4 54 61.1
Migut.M00035 Erythranthe guttata HOM05D004793 ORTHO05D004423 1.6e-06 56.6 84 44.0
Zm00001eb049820 Zea mays HOM05D004793 ORTHO05D004423 2.1e-06 56.2 121 37.2
RcHm_v2.0_Chr5g0000821 Rosa chinensis HOM05D020126 ORTHO05D004423 2.7e-06 55.8 85 47.1
PGSC0003DMG400008468 Solanum tuberosum HOM05D018828 ORTHO05D004423 2.7e-06 55.8 126 34.9
Zm00001eb008150 Zea mays HOM05D020977 ORTHO05D030367 2.7e-06 55.8 151 33.8
CAN.G696.14 Capsicum annuum HOM05D018828 ORTHO05D004423 3.5e-06 55.5 130 36.9
CDE04G1256 Ceratophyllum demersum HOM05D000020 ORTHO05D000156 3.5e-06 55.5 101 39.6
Carub.0007s2506 Capsella rubella HOM05D010379 ORTHO05D012419 4.6e-06 55.1 127 34.6
CARHR222830 Cardamine hirsuta HOM05D010379 ORTHO05D012419 4.6e-06 55.1 127 34.6
Sc05g0009740 Simmondsia chinensis HOM05D004793 ORTHO05D004423 6.0e-06 54.7 94 41.5
Atru.chr1.2342 Acer truncatum HOM05D004793 ORTHO05D004423 7.9e-06 54.3 65 53.8
AL7G38540 Arabidopsis lyrata HOM05D010379 ORTHO05D012419 7.9e-06 54.3 127 33.9


User provided reference genes

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