Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 3.6e-139 498.4 290 100.0
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 7.0e-42 175.3 484 37.2
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 1.4e-37 161.0 109 89.0
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 8.9e-37 158.3 109 88.1
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 1.2e-36 157.9 109 89.0
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 1.5e-36 157.5 108 88.0
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 2.0e-36 157.1 109 79.8
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 4.9e-35 152.5 108 70.4
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 4.9e-35 152.5 109 85.3
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 4.9e-35 152.5 109 85.3
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 4.9e-35 152.5 109 85.3
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 4.9e-35 152.5 109 85.3
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 4.9e-35 152.5 109 85.3
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 4.9e-35 152.5 109 86.2
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 8.3e-35 151.8 109 84.4
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 3.2e-34 149.8 105 87.6
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 3.2e-34 149.8 109 86.2
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 5.4e-34 149.1 111 83.8
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 7.1e-34 148.7 112 77.7
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 7.1e-34 148.7 109 86.2
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 9.2e-34 148.3 109 83.5
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 2.7e-33 146.7 109 80.7
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 2.7e-33 146.7 109 67.9
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 4.6e-33 146.0 96 89.6
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 6.0e-33 145.6 515 33.4
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 6.0e-33 145.6 109 67.0
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 6.0e-33 145.6 109 81.7
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 1.0e-32 144.8 109 81.7
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 1.3e-32 144.4 123 70.7
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 1.7e-32 144.1 109 77.1
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 1.7e-32 144.1 109 65.1
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 5.1e-32 142.5 109 81.7
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 6.6e-32 142.1 481 33.9
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 3.3e-31 139.8 94 86.2
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 4.3e-31 139.4 92 89.1
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 4.3e-31 139.4 109 80.7
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 5.6e-31 139.0 94 89.4
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 9.5e-31 138.3 92 90.2
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 9.5e-31 138.3 92 90.2
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 9.5e-31 138.3 92 90.2
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 1.2e-30 137.9 93 89.2
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 4.7e-30 136.0 108 64.8
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 4.7e-30 136.0 109 79.8
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 1.8e-29 134.0 93 87.1
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 2.3e-29 133.7 92 90.2
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 4.0e-29 132.9 92 85.9
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 5.2e-29 132.5 92 88.0
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 5.2e-29 132.5 92 88.0
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 5.2e-29 132.5 92 88.0
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 6.8e-29 132.1 94 84.0
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 8.9e-29 131.7 92 87.0
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 8.9e-29 131.7 109 78.9
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 8.9e-29 131.7 109 78.9
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 8.9e-29 131.7 109 78.9
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 1.5e-28 131.0 91 84.6
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.5e-28 131.0 92 88.0
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 1.5e-28 131.0 92 88.0
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 2.6e-28 130.2 92 80.4
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 3.4e-28 129.8 108 76.9
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 4.4e-28 129.4 91 85.7
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 7.6e-28 128.6 91 80.2
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 9.9e-28 128.3 91 86.8
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 1.3e-27 127.9 91 85.7
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.3e-27 127.9 109 73.4
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 2.2e-27 127.1 109 75.2
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 2.2e-27 127.1 92 88.0
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 2.2e-27 127.1 109 75.2
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 2.9e-27 126.7 92 83.7
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 3.8e-27 126.3 92 83.7
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 3.8e-27 126.3 92 83.7
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 4.9e-27 125.9 91 85.7
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 4.9e-27 125.9 109 74.3
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 4.9e-27 125.9 109 74.3
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 4.9e-27 125.9 109 74.3
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 4.9e-27 125.9 109 74.3
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 4.9e-27 125.9 109 74.3
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 4.9e-27 125.9 109 74.3
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 6.4e-27 125.6 91 83.5
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 6.4e-27 125.6 109 74.3
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 1.1e-26 124.8 109 74.3
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 1.4e-26 124.4 109 74.3
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 1.4e-26 124.4 109 74.3
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 3.2e-26 123.2 91 83.5
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.6e-25 120.9 91 81.3
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 2.1e-25 120.6 91 81.3
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 3.5e-25 119.8 105 75.2
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 3.5e-25 119.8 94 79.8
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 7.8e-25 118.6 94 79.8
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 3.9e-24 116.3 92 79.3
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 3.9e-24 116.3 92 80.4
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 8.6e-24 115.2 93 78.5
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 1.5e-23 114.4 95 77.9
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 1.9e-23 114.0 92 81.5
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 2.5e-23 113.6 100 59.0
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 3.3e-23 113.2 96 80.2
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 2.6e-20 103.6 107 68.2
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 2.6e-20 103.6 88 77.3
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 2.6e-20 103.6 88 77.3
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 7.6e-20 102.1 517 28.8
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 2.9e-19 100.1 519 29.3
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 1.2e-17 94.7 207 39.1
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 6.0e-17 92.4 54 77.8
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 8.7e-16 88.6 83 73.5
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 2.1e-14 84.0 88 59.1
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 6.2e-14 82.4 205 37.6
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 1.5e-12 77.8 93 45.2
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 1.3e-11 74.7 92 41.3
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 8.4e-11 72.0 88 40.9
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 2.7e-09 67.0 220 35.9
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 8.7e-08 62.0 147 36.1
Oeu034554.1 Olea europaea HOM05D006454 ORTHO05D008024 5.6e-07 59.3 122 40.2
VMungo1080G1759 Vigna mungo HOM05D006454 ORTHO05D008024 6.2e-06 55.8 84 44.0


User provided reference genes

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