Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.3e-115 417.9 202 100.0
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.5e-94 349.0 201 85.6
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.6e-93 345.1 201 88.1
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.6e-93 345.1 201 88.1
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 7.0e-89 330.9 189 88.4
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.0e-87 324.7 198 83.3
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.7e-63 246.5 134 92.5
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.7e-58 229.9 127 90.6
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.7e-50 202.2 113 89.4
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 9.9e-27 124.4 66 90.9
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 2.2e-26 123.2 187 44.4
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.1e-24 116.7 61 95.1
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 8.1e-21 104.8 66 74.2
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 5.3e-20 102.1 76 73.7
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 5.8e-19 98.6 68 70.6
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 1.0e-18 97.8 121 47.9
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 1.0e-18 97.8 66 69.7
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 1.7e-18 97.1 66 65.2
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 2.2e-18 96.7 66 69.7
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 3.8e-18 95.9 66 62.1
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 4.9e-18 95.5 107 52.3
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 4.9e-18 95.5 69 69.6
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 4.9e-18 95.5 66 66.7
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 6.5e-18 95.1 66 66.7
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 8.4e-18 94.7 63 73.0
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 8.4e-18 94.7 148 42.6
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.1e-17 94.4 63 73.0
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 1.9e-17 93.6 66 65.2
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 2.5e-17 93.2 66 62.1
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 5.5e-17 92.0 66 62.1
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 9.3e-17 91.3 66 65.2
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 1.2e-16 90.9 66 62.1
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.6e-16 90.5 63 74.6
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 1.6e-16 90.5 66 57.6
Nn7g36587 Nelumbo nucifera HOM05D006588 ORTHO05D008272 2.1e-16 90.1 54 83.3
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 2.7e-16 89.7 66 60.6
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 3.5e-16 89.4 156 44.2
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 3.5e-16 89.4 66 56.1
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 3.5e-16 89.4 66 59.1
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 3.5e-16 89.4 120 43.3
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 3.5e-16 89.4 66 62.1
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 4.6e-16 89.0 72 61.1
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 6.0e-16 88.6 66 62.1
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 6.0e-16 88.6 66 62.1
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 6.0e-16 88.6 66 62.1
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 6.0e-16 88.6 66 63.6
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 6.0e-16 88.6 66 57.6
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 7.9e-16 88.2 66 60.6
COL.COLO4_18239 Corchorus olitorius HOM05D006588 ORTHO05D008272 1.0e-15 87.8 66 62.1
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 1.0e-15 87.8 76 60.5
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 1.3e-15 87.4 65 58.5
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 1.3e-15 87.4 66 56.1
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 1.8e-15 87.0 66 56.1
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 3.9e-15 85.9 91 51.6
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 3.9e-15 85.9 67 59.7
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 5.1e-15 85.5 54 74.1
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 5.1e-15 85.5 125 40.8
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 5.1e-15 85.5 66 54.5
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 6.7e-15 85.1 66 59.1
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 6.7e-15 85.1 51 78.4
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 6.7e-15 85.1 65 60.0
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 8.7e-15 84.7 64 65.6
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.1e-14 84.3 66 65.2
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 1.1e-14 84.3 62 69.4
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 1.1e-14 84.3 84 57.1
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 1.1e-14 84.3 66 57.6
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.9e-14 83.6 64 64.1
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.9e-14 83.6 64 64.1
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 1.9e-14 83.6 133 39.1
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 2.5e-14 83.2 81 58.0
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 2.5e-14 83.2 65 61.5
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 2.5e-14 83.2 61 67.2
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 2.5e-14 83.2 157 41.4
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 3.3e-14 82.8 65 64.6
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 3.3e-14 82.8 66 60.6
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 3.3e-14 82.8 66 57.6
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 3.3e-14 82.8 61 67.2
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 3.3e-14 82.8 61 68.9
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 3.3e-14 82.8 65 55.4
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 3.3e-14 82.8 65 55.4
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 4.3e-14 82.4 51 76.5
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 4.3e-14 82.4 66 56.1
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 5.7e-14 82.0 51 74.5
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 5.7e-14 82.0 66 59.1
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 7.4e-14 81.6 51 72.5
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 9.6e-14 81.3 67 61.2
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 9.6e-14 81.3 88 52.3
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 9.6e-14 81.3 58 67.2
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 1.3e-13 80.9 91 49.5
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 1.6e-13 80.5 62 62.9
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 1.6e-13 80.5 62 58.1
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 2.1e-13 80.1 67 59.7
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 2.1e-13 80.1 67 59.7
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 2.1e-13 80.1 65 53.8
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 2.8e-13 79.7 67 59.7
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 2.8e-13 79.7 49 77.6
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 3.7e-13 79.3 46 80.4
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 4.8e-13 79.0 69 52.2
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 4.8e-13 79.0 53 71.7
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 6.2e-13 78.6 69 52.2
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 6.2e-13 78.6 58 67.2
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 6.2e-13 78.6 66 53.0
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 8.2e-13 78.2 69 52.2
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 8.2e-13 78.2 58 69.0
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 1.1e-12 77.8 69 53.6
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 1.1e-12 77.8 67 58.2
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 1.1e-12 77.8 66 50.0
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 1.4e-12 77.4 67 58.2
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 1.4e-12 77.4 65 58.5
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 1.4e-12 77.4 50 70.0
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 1.4e-12 77.4 65 55.4
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 1.4e-12 77.4 67 55.2
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 1.8e-12 77.0 69 50.7
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 2.4e-12 76.6 66 53.0
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 2.4e-12 76.6 47 72.3
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 2.4e-12 76.6 78 48.7
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 3.1e-12 76.3 65 49.2
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 3.1e-12 76.3 73 54.8
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 4.1e-12 75.9 69 50.7
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 4.1e-12 75.9 74 59.5
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 4.1e-12 75.9 57 68.4
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 4.1e-12 75.9 61 63.9
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 4.1e-12 75.9 58 69.0
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 4.1e-12 75.9 51 68.6
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 5.3e-12 75.5 76 50.0
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 5.3e-12 75.5 138 37.7
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 1.2e-11 74.3 69 50.7
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 1.2e-11 74.3 69 49.3
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 1.2e-11 74.3 65 53.8
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.2e-11 74.3 103 42.7
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 1.2e-11 74.3 60 60.0
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 1.2e-11 74.3 76 50.0
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 1.5e-11 73.9 67 56.7
Lsat_1_v5_gn_7_39080 Lactuca sativa HOM05D006588 ORTHO05D008272 1.5e-11 73.9 65 53.8
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 1.5e-11 73.9 67 55.2
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 1.5e-11 73.9 50 68.0
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 2.0e-11 73.6 66 51.5
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 2.0e-11 73.6 67 55.2
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 2.0e-11 73.6 66 51.5
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 2.0e-11 73.6 66 51.5
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 2.0e-11 73.6 67 56.7
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 2.6e-11 73.2 114 43.9
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 3.4e-11 72.8 67 53.7
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 4.5e-11 72.4 148 39.2
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 4.5e-11 72.4 118 42.4
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 4.5e-11 72.4 134 37.3
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 5.8e-11 72.0 145 36.6
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 7.6e-11 71.6 79 49.4
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 7.6e-11 71.6 67 52.2
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 7.6e-11 71.6 85 52.9
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 7.6e-11 71.6 137 39.4
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 1.3e-10 70.9 82 46.3
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 1.7e-10 70.5 67 55.2
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 1.7e-10 70.5 67 53.7
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 1.7e-10 70.5 83 44.6
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 2.2e-10 70.1 51 60.8
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 2.9e-10 69.7 51 62.7
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 3.8e-10 69.3 62 58.1
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 3.8e-10 69.3 67 44.8
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 3.8e-10 69.3 58 55.2
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 3.8e-10 69.3 58 56.9
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 5.0e-10 68.9 61 55.7
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 6.5e-10 68.6 106 38.7
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 6.5e-10 68.6 62 54.8
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 6.5e-10 68.6 106 38.7
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 8.4e-10 68.2 51 58.8
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 8.4e-10 68.2 57 54.4
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 1.1e-09 67.8 57 56.1
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 1.4e-09 67.4 48 62.5
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 1.4e-09 67.4 48 62.5
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 1.4e-09 67.4 51 58.8
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 3.2e-09 66.2 69 47.8
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 7.1e-09 65.1 61 52.5
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 1.2e-08 64.3 110 36.4
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 1.6e-08 63.9 42 66.7
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 1.6e-08 63.9 68 50.0
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 2.1e-08 63.5 80 43.8
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 2.1e-08 63.5 65 46.2
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 2.1e-08 63.5 65 46.2
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 2.1e-08 63.5 48 62.5
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 3.5e-08 62.8 53 50.9
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 1.0e-07 61.2 71 42.3
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 1.8e-07 60.5 71 50.7
Haze_18080 Corylus avellana HOM05D006588 ORTHO05D008272 1.1e-06 57.8 35 62.9
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 1.5e-06 57.4 56 55.4
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 2.5e-06 56.6 112 38.4


User provided reference genes

Program Settings