Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 8.7e-134 480.3 247 100.0
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 5.5e-128 461.1 247 93.5
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.7e-127 458.8 245 94.3
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 3.5e-127 458.4 245 93.9
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 3.5e-127 458.4 247 93.5
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 6.1e-127 457.6 245 93.9
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.8e-126 456.1 245 94.3
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.8e-126 456.1 245 94.3
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 3.9e-126 454.9 247 93.5
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 3.9e-126 454.9 247 93.1
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 3.9e-126 454.9 245 93.9
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 8.7e-126 453.8 247 92.3
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.1e-125 453.4 245 93.5
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.1e-125 453.4 247 92.3
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 1.5e-125 453.0 247 92.7
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 3.3e-125 451.8 245 92.2
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 3.3e-125 451.8 245 92.7
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 5.7e-125 451.1 245 93.1
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 5.7e-125 451.1 246 91.5
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 7.4e-125 450.7 245 92.2
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 92.3
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 9.7e-125 450.3 245 91.8
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 9.7e-125 450.3 246 91.9
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 1.6e-124 449.5 245 92.2
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 1.6e-124 449.5 247 91.9
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 1.6e-124 449.5 247 91.1
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.6e-124 449.5 245 92.2
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.6e-124 449.5 245 92.2
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 2.2e-124 449.1 248 91.9
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 2.2e-124 449.1 248 91.9
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 2.2e-124 449.1 245 91.8
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 2.8e-124 448.7 247 91.9
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 3.7e-124 448.4 246 93.1
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 3.7e-124 448.4 245 91.8
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 4.8e-124 448.0 247 91.5
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 4.8e-124 448.0 245 91.4
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 4.8e-124 448.0 245 91.4
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 4.8e-124 448.0 235 97.0
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 6.3e-124 447.6 245 91.0
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 6.3e-124 447.6 245 91.0
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 90.7
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 8.2e-124 447.2 243 91.4
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 1.1e-123 446.8 245 92.7
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.1e-123 446.8 247 91.5
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.1e-123 446.8 245 91.8
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 1.4e-123 446.4 246 91.5
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 2.4e-123 445.7 247 90.7
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 3.1e-123 445.3 243 91.4
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 3.1e-123 445.3 245 91.0
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 3.1e-123 445.3 244 91.4
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 4.1e-123 444.9 243 91.4
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 5.3e-123 444.5 247 89.9
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 5.3e-123 444.5 247 90.7
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 6.9e-123 444.1 247 91.1
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 9.0e-123 443.7 243 90.9
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 9.0e-123 443.7 244 91.8
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 91.1
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 91.1
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 1.5e-122 443.0 245 90.6
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 2.0e-122 442.6 248 90.3
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 2.0e-122 442.6 245 90.6
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 2.0e-122 442.6 245 90.6
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 2.0e-122 442.6 245 90.6
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 2.6e-122 442.2 246 89.0
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 3.4e-122 441.8 245 89.8
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 7.7e-122 440.7 245 89.8
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 7.7e-122 440.7 252 89.7
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 7.7e-122 440.7 246 89.8
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 2.2e-121 439.1 246 89.4
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 2.9e-121 438.7 245 89.0
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 5.0e-121 438.0 247 90.3
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 5.0e-121 438.0 247 90.3
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 5.0e-121 438.0 247 89.1
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 5.0e-121 438.0 247 89.9
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 5.0e-121 438.0 247 89.1
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 5.0e-121 438.0 247 89.1
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 5.0e-121 438.0 247 89.1
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 89.5
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 89.9
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 6.5e-121 437.6 248 88.7
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 6.5e-121 437.6 248 88.7
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 8.5e-121 437.2 247 89.9
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 1.1e-120 436.8 247 89.9
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 1.1e-120 436.8 247 89.9
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 1.1e-120 436.8 245 89.0
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 1.4e-120 436.4 247 89.9
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 1.4e-120 436.4 247 89.9
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 1.4e-120 436.4 245 89.0
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 88.7
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 1.9e-120 436.0 247 90.3
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 2.5e-120 435.6 247 88.3
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 3.2e-120 435.3 247 88.7
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 3.2e-120 435.3 247 89.5
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 3.2e-120 435.3 247 89.5
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 4.2e-120 434.9 247 89.1
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 4.2e-120 434.9 247 88.7
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 4.2e-120 434.9 247 88.7
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 4.2e-120 434.9 247 89.5
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 4.2e-120 434.9 248 88.3
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 5.5e-120 434.5 244 88.9
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 7.2e-120 434.1 247 88.3
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 9.4e-120 433.7 247 87.9
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.6e-119 433.0 247 89.1
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 2.1e-119 432.6 247 88.3
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 2.7e-119 432.2 245 87.8
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 4.6e-119 431.4 247 88.3
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 6.1e-119 431.0 245 88.6
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 1.0e-118 430.3 245 87.8
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.8e-118 429.5 248 89.1
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 3.0e-118 428.7 248 88.7
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 3.0e-118 428.7 304 76.3
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 3.9e-118 428.3 246 88.6
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 6.7e-118 427.6 247 87.4
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 6.7e-118 427.6 269 83.3
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.1e-117 426.8 248 88.3
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 1.1e-117 426.8 246 88.2
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.5e-117 426.4 246 87.0
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 3.3e-117 425.2 247 86.2
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 4.3e-117 424.9 284 78.5
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 5.7e-117 424.5 247 87.4
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 7.4e-117 424.1 260 85.4
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 2.8e-116 422.2 246 86.2
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 3.7e-116 421.8 290 76.9
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 2.6e-114 415.6 246 85.0
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 4.5e-114 414.8 247 86.6
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 2.2e-113 412.5 246 85.0
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 2.7e-111 405.6 332 67.5
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 3.6e-111 405.2 250 83.2
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 2.6e-109 399.1 245 82.0
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 1.7e-108 396.4 251 79.7
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 2.2e-108 396.0 378 59.8
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.4e-107 393.3 209 92.3
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.4e-107 393.3 209 92.3
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 1.8e-107 392.9 251 78.1
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 4.1e-107 391.7 250 79.2
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 1.2e-106 390.2 264 78.4
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.5e-106 389.8 252 77.8
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 5.0e-105 384.8 252 76.2
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 3.3e-101 372.1 213 88.3
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 1.8e-99 366.3 359 58.8
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 5.7e-93 344.7 242 74.4
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 2.5e-88 329.3 245 73.5
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 9.4e-88 327.4 198 87.9
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 8.0e-87 324.3 245 71.0
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 1.1e-83 313.9 172 91.9
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 2.4e-83 312.8 172 91.9
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 1.6e-82 310.1 179 88.8
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 5.5e-80 301.6 163 90.8
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 1.5e-77 293.5 166 86.7
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 4.7e-71 271.9 280 55.7
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 4.9e-60 235.3 241 50.2
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.4e-59 233.8 138 86.2
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 6.6e-49 198.4 232 45.3
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 9.6e-48 194.5 245 51.0
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 2.0e-45 186.8 249 43.4
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 3.8e-44 182.6 102 89.2
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.3e-39 167.5 94 87.2
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 1.4e-38 164.1 199 53.3
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.4e-35 154.1 163 55.2
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 6.9e-30 135.2 141 55.3
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 1.7e-28 130.6 82 80.5
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 7.1e-27 125.2 84 73.8
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 4.6e-26 122.5 82 82.9
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 6.0e-26 122.1 83 78.3
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 1.5e-24 117.5 232 35.8
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 5.6e-24 115.5 212 42.5
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 2.2e-20 103.6 99 51.5
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 3.0e-17 93.2 51 86.3
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 1.9e-16 90.5 57 84.2
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 2.1e-15 87.0 46 87.0
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 2.8e-15 86.7 74 67.6
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 2.8e-15 86.7 51 86.3
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 1.2e-13 81.3 52 86.5
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 1.7e-12 77.4 79 58.2
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 7.2e-11 72.0 38 86.8
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 7.9e-10 68.6 105 46.7
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.8e-09 67.4 45 82.2
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 1.8e-09 67.4 90 51.1
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 8.2e-07 58.5 36 75.0
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 8.2e-07 58.5 36 75.0
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 1.4e-06 57.8 90 48.9
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 2.4e-06 57.0 36 72.2
vmacro22601 Vaccinium macrocarpon HOM05D003856 ORTHO05D426869 2.4e-06 57.0 87 48.3


User provided reference genes

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