Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 1.5e-175 619.4 315 100.0
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 4.2e-64 249.2 246 57.3
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 3.7e-60 236.1 281 48.0
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 4.8e-60 235.7 224 53.6
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 1.1e-59 234.6 215 56.3
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 7.6e-58 228.4 206 55.3
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 9.9e-58 228.0 184 59.8
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 9.9e-58 228.0 290 47.6
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 1.2e-55 221.1 245 51.4
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 1.6e-55 220.7 254 46.9
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 4.6e-55 219.2 211 52.6
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 6.0e-55 218.8 211 53.1
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 6.0e-55 218.8 209 59.8
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 3.0e-54 216.5 211 52.6
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 3.9e-54 216.1 202 53.5
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 1.5e-53 214.2 222 51.4
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 1.6e-52 210.7 180 53.9
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 3.7e-52 209.5 137 68.6
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 1.1e-51 208.0 195 49.7
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 1.4e-51 207.6 193 56.0
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 2.4e-51 206.8 177 56.5
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 3.1e-51 206.5 249 42.6
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 3.1e-51 206.5 210 50.5
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 4.0e-51 206.1 217 48.8
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 2.0e-50 203.8 223 46.6
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 3.8e-49 199.5 222 44.6
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 1.1e-48 198.0 264 43.2
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 1.1e-48 198.0 187 51.3
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 1.9e-48 197.2 239 45.2
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 9.3e-48 194.9 220 45.9
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 1.2e-47 194.5 231 46.8
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 2.1e-47 193.7 199 47.7
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 1.3e-46 191.0 222 46.8
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 2.3e-46 190.3 139 63.3
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 9.7e-45 184.9 206 44.2
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 1.3e-44 184.5 219 45.2
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 2.8e-44 183.3 165 53.9
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 1.4e-43 181.0 175 46.9
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 1.5e-42 177.6 157 56.1
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 2.9e-41 173.3 152 53.3
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 5.0e-41 172.6 170 50.6
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 5.0e-41 172.6 170 50.6
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 1.1e-40 171.4 170 49.4
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 1.4e-40 171.0 170 50.0
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 4.2e-40 169.5 177 44.6
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 7.2e-40 168.7 175 49.1
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 7.2e-40 168.7 287 38.3
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 2.1e-39 167.2 239 41.0
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 3.6e-39 166.4 241 41.9
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 1.8e-38 164.1 194 41.8
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 1.8e-38 164.1 226 39.4
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 1.8e-38 164.1 228 39.9
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 2.3e-38 163.7 226 40.3
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 2.3e-38 163.7 159 52.2
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 8.8e-38 161.8 196 44.4
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 3.3e-37 159.8 178 47.2
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 4.3e-37 159.5 227 41.0
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 1.7e-36 157.5 231 39.8
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 1.2e-34 151.4 241 39.0
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 2.0e-34 150.6 209 39.2
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 2.0e-34 150.6 142 47.9
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 2.6e-34 150.2 143 51.0
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 1.3e-33 147.9 142 46.5
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 3.8e-33 146.4 232 38.4
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 2.5e-32 143.7 133 56.4
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 2.7e-31 140.2 193 41.5
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 4.7e-31 139.4 208 42.3
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 1.5e-29 134.4 219 36.1
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 1.5e-29 134.4 143 46.9
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 3.7e-28 129.8 120 49.2
Cfa000096 Carpinus fangiana HOM05D007829 ORTHO05D009903 1.1e-27 128.3 147 46.3
TPR.G18790 Trifolium pratense HOM05D007829 ORTHO05D009903 7.7e-26 122.1 116 48.3
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 4.2e-24 116.3 128 46.1
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 4.2e-24 116.3 175 39.4
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 5.5e-24 115.9 105 51.4
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 1.8e-22 110.9 89 53.9
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 6.3e-20 102.4 154 35.1
MBI16_g31712_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 8.5e-17 92.0 194 33.5
ClCG01G021470 Citrullus lanatus HOM05D007829 ORTHO05D009903 3.2e-16 90.1 243 28.0
unitig_748.g7131 Utricularia gibba HOM05D007829 ORTHO05D009903 7.2e-16 89.0 84 48.8
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 2.0e-13 80.9 132 32.6
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 2.6e-13 80.5 160 29.4
Rhsim07G0088000 Rhododendron simsii HOM05D002745 ORTHO05D002945 3.3e-13 80.1 117 36.8
CsaV3_6G048490 Cucumis sativus L. HOM05D007829 ORTHO05D009903 4.4e-13 79.7 172 27.9
SEGI_16879 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 9.7e-13 78.6 132 34.8
AL7G47950 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 2.8e-12 77.0 138 29.0
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 4.8e-12 76.3 191 28.3
AT5G41470 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 6.3e-12 75.9 138 29.0
SEGI_30590 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 1.4e-11 74.7 154 31.8
FAN08G3121 Fragaria x ananassa HOM05D002745 ORTHO05D002945 2.4e-11 73.9 204 27.5
Carub.0007s3403 Capsella rubella HOM05D002745 ORTHO05D002945 3.1e-11 73.6 138 28.3
Dinv38911 Davidia involucrata HOM05D002745 ORTHO05D002945 3.1e-11 73.6 138 30.4
DCAR_000629 Daucus carota HOM05D002745 ORTHO05D002945 1.6e-10 71.2 154 28.6
ECA233G2193 Erigeron canadensis HOM05D002745 ORTHO05D002945 1.6e-10 71.2 116 31.9
QL12p032067 Quercus lobata HOM05D002745 ORTHO05D002945 1.6e-10 71.2 143 29.4
Solyc11g012310.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 1.6e-10 71.2 87 40.2
SGA_v2.0_scaffold118G32594 Striga asiatica HOM05D002745 ORTHO05D002945 2.0e-10 70.9 143 29.4
CANSAT56G3529 Cannabis sativa HOM05D002745 ORTHO05D002945 3.5e-10 70.1 138 29.0
TWI18G0548 Tripterygium wilfordii HOM05D002745 ORTHO05D002945 3.5e-10 70.1 217 26.7
arahy.Tifrunner.gnm1.ann1.10XUBW Arachis hypogaea HOM05D007829 ORTHO05D009903 5.9e-10 69.3 101 37.6
RcHm_v2.0_Chr7g0231601 Rosa chinensis HOM05D002745 ORTHO05D002945 5.9e-10 69.3 146 28.8
Ciclev10022055m.g Citrus clementina HOM05D002745 ORTHO05D002945 1.3e-09 68.2 153 26.8
Actinidia33738 Actinidia chinensis HOM05D002745 ORTHO05D002945 2.2e-09 67.4 96 34.4
Manes.18G119000 Manihot esculenta HOM05D002745 ORTHO05D002945 2.2e-09 67.4 121 29.8
THA.LOC104817848 Tarenaya hassleriana HOM05D002745 ORTHO05D002945 2.2e-09 67.4 158 26.6
CiPaw.03G016400 Carya illinoinensis HOM05D002745 ORTHO05D002945 2.9e-09 67.0 118 30.5
Cpa.g.sc180.25 Carica papaya HOM05D002745 ORTHO05D002945 3.8e-09 66.6 149 27.5
Rhsim08G0115600 Rhododendron simsii HOM05D002745 ORTHO05D002945 3.8e-09 66.6 110 30.0
ATR1089G026 Amborella trichopoda HOM05D002745 ORTHO05D002945 5.0e-09 66.2 174 25.9
Aqoxy5G00847 Aquilegia oxysepala HOM05D002745 ORTHO05D002945 5.0e-09 66.2 110 29.1
PSO063G0080 Papaver somniferum HOM05D002745 ORTHO05D002945 8.5e-09 65.5 143 25.9
Sabra19G0085500 Salix brachista HOM05D002745 ORTHO05D002945 8.5e-09 65.5 110 30.0
Gohir.A12G234200 Gossypium hirsutum HOM05D002745 ORTHO05D002945 1.1e-08 65.1 203 25.6
Gohir.D12G233100 Gossypium hirsutum HOM05D002745 ORTHO05D002945 1.1e-08 65.1 203 25.1
Sc22g0005360 Simmondsia chinensis HOM05D002745 ORTHO05D002945 1.5e-08 64.7 129 27.1
Gorai.008G249500 Gossypium raimondii HOM05D002745 ORTHO05D002945 1.9e-08 64.3 203 25.1
MD08G1213700 Malus domestica HOM05D002745 ORTHO05D002945 1.9e-08 64.3 184 25.0
Prupe.1G545800 Prunus persica HOM05D002745 ORTHO05D002945 1.9e-08 64.3 179 26.3
Thecc.07G155300 Theobroma cacao HOM05D002745 ORTHO05D002945 2.5e-08 63.9 121 28.9
Lsat_1_v5_gn_6_4781 Lactuca sativa HOM05D002745 ORTHO05D002945 3.2e-08 63.5 170 27.1
vmacro17840 Vaccinium macrocarpon HOM05D002745 ORTHO05D002945 3.2e-08 63.5 136 27.9
ATR0712G092 Amborella trichopoda HOM05D007829 ORTHO05D009903 4.2e-08 63.2 107 37.4
CAN.G1039.10 Capsicum annuum HOM05D002745 ORTHO05D002945 4.2e-08 63.2 107 27.1
Hma1.2p1_0004F.1_g003790 Hydrangea macrophylla HOM05D002745 ORTHO05D002945 4.2e-08 63.2 110 30.9
Hma1.2p1_0004F.1_g003800 Hydrangea macrophylla HOM05D002745 ORTHO05D002945 4.2e-08 63.2 110 30.9
Potri.019G074800 Populus trichocarpa HOM05D002745 ORTHO05D002945 7.2e-08 62.4 178 27.0
HanXRQChr17g0559011 Helianthus annuus HOM05D002745 ORTHO05D002945 1.2e-07 61.6 180 27.2
Glyma.11G014300 Glycine max HOM05D002745 ORTHO05D002945 1.6e-07 61.2 118 29.7
Prupe.8G022100 Prunus persica HOM05D002745 ORTHO05D002945 1.6e-07 61.2 110 26.4
arahy.Tifrunner.gnm1.ann1.TL04YN Arachis hypogaea HOM05D002745 ORTHO05D002945 2.1e-07 60.8 145 29.7
Duzib213G0118 Durio zibethinus HOM05D002745 ORTHO05D002945 2.1e-07 60.8 138 26.8
Lsat_1_v5_gn_4_133100 Lactuca sativa HOM05D002745 ORTHO05D002945 2.1e-07 60.8 138 26.8
Cc10_g08820 Coffea canephora HOM05D002745 ORTHO05D002945 2.7e-07 60.5 110 28.2
Prupe.5G104900 Prunus persica HOM05D002745 ORTHO05D002945 2.7e-07 60.5 166 26.5
Psat3g191440 Pisum sativum HOM05D002745 ORTHO05D002945 4.7e-07 59.7 140 25.7
VMungo1215G1904 Vigna mungo HOM05D002745 ORTHO05D002945 4.7e-07 59.7 140 25.7
arahy.Tifrunner.gnm1.ann1.IX2F7U Arachis hypogaea HOM05D002745 ORTHO05D002945 6.1e-07 59.3 146 28.8
Phvul.002G035800 Phaseolus vulgaris HOM05D002745 ORTHO05D002945 8.0e-07 58.9 140 25.0
Medtr7g018880 Medicago truncatula HOM05D002745 ORTHO05D002945 1.0e-06 58.5 140 25.7
PSO832G1614 Papaver somniferum HOM05D002745 ORTHO05D002945 1.0e-06 58.5 210 23.8
Dinv02444 Davidia involucrata HOM05D002745 ORTHO05D002945 1.4e-06 58.2 124 28.2
CSS0032411 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 1.8e-06 57.8 83 36.1
SalBow7G1915 Salvia bowleyana HOM05D000972 ORTHO05D007902 1.8e-06 57.8 110 28.2
Sed0022750 Sechium edule HOM05D007829 ORTHO05D009903 2.3e-06 57.4 75 32.0
HPP92_009206 Vanilla planifolia HOM05D002745 ORTHO05D002945 2.3e-06 57.4 106 29.2
Cc08_g15110 Coffea canephora HOM05D002745 ORTHO05D002945 3.0e-06 57.0 95 28.4
Glyma.01G231300 Glycine max HOM05D002745 ORTHO05D002945 4.0e-06 56.6 92 30.4
MSTRG.1588 Avicennia marina HOM05D002745 ORTHO05D002945 5.2e-06 56.2 136 26.5
Lsat_1_v5_gn_4_62060 Lactuca sativa HOM05D007829 ORTHO05D009903 6.8e-06 55.8 75 34.7


User provided reference genes

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