Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 2.2e-299 1031.6 540 100.0
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 8.0e-241 837.0 540 81.3
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 2.7e-220 768.8 543 73.5
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 2.5e-218 762.3 538 74.5
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 5.6e-218 761.1 538 73.6
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.4e-216 756.5 538 72.7
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 1.3e-214 750.0 549 71.2
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 6.4e-214 747.7 544 71.7
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 5.4e-213 744.6 541 72.3
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 2.7e-212 742.3 478 78.0
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 1.3e-211 740.0 527 73.8
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 5.1e-211 738.0 537 70.4
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 2.4e-208 729.2 540 70.0
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 5.2e-208 728.0 542 69.4
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 1.5e-207 726.5 469 76.3
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 2.0e-207 726.1 538 69.3
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 2.6e-207 725.7 464 78.7
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 4.4e-207 724.9 489 74.6
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 4.4e-207 724.9 554 68.2
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 5.8e-207 724.5 469 75.5
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 2.2e-206 722.6 475 75.8
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 8.4e-206 720.7 527 70.2
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 2.4e-205 719.2 534 70.0
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 3.5e-204 715.3 539 67.9
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 4.6e-204 714.9 539 67.7
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 1.7e-203 713.0 538 67.1
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 2.3e-203 712.6 470 74.7
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 5.1e-203 711.4 530 70.0
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 6.6e-203 711.1 539 67.5
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 1.5e-202 709.9 470 73.8
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 2.5e-202 709.1 469 74.4
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 3.3e-202 708.8 541 69.1
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 4.3e-202 708.4 467 74.3
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 7.3e-202 707.6 534 68.9
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 1.3e-201 706.8 505 70.5
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 1.3e-201 706.8 549 66.3
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.3e-201 706.8 533 69.6
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 8.1e-201 704.1 539 68.6
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 2.4e-200 702.6 531 67.4
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 4.0e-200 701.8 531 68.5
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 9.0e-200 700.7 538 66.0
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 3.4e-199 698.7 526 67.9
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 4.5e-199 698.4 468 74.4
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 4.5e-199 698.4 493 70.4
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 4.5e-199 698.4 556 64.2
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 5.8e-199 698.0 570 66.7
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 2.9e-198 695.7 468 73.3
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 8.4e-198 694.1 547 66.2
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 1.4e-197 693.3 546 65.8
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 3.2e-197 692.2 544 66.5
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 5.4e-197 691.4 469 72.9
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 2.7e-196 689.1 460 73.5
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 7.9e-196 687.6 459 74.3
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 7.9e-196 687.6 526 67.9
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 3.9e-195 685.3 545 67.2
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 6.7e-195 684.5 497 67.0
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 2.5e-194 682.6 531 66.1
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 4.3e-194 681.8 509 69.5
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 4.8e-193 678.3 537 64.2
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 2.4e-192 676.0 474 69.8
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 2.4e-192 676.0 528 64.0
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 2.6e-191 672.5 544 63.4
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 2.6e-191 672.5 440 74.3
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 7.6e-191 671.0 467 70.2
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 2.9e-190 669.1 547 64.9
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 3.8e-190 668.7 481 68.2
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 4.9e-190 668.3 446 74.2
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 1.1e-189 667.2 467 70.0
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 1.1e-189 667.2 481 69.0
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 1.4e-189 666.8 539 66.2
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 1.9e-189 666.4 509 66.2
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 3.2e-189 665.6 547 64.5
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 5.5e-189 664.8 467 69.8
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 7.1e-189 664.5 536 64.2
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 2.1e-188 662.9 560 60.7
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 2.7e-188 662.5 471 69.4
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 1.0e-187 660.6 467 69.2
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 6.7e-187 657.9 467 69.2
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 1.1e-186 657.1 518 64.7
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 9.6e-186 654.1 522 64.9
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 6.2e-185 651.4 533 65.9
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 5.8e-183 644.8 459 70.6
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 4.9e-182 641.7 528 62.1
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 1.9e-181 639.8 532 61.5
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 3.2e-181 639.0 553 63.5
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 1.3e-177 627.1 457 68.1
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 2.8e-177 625.9 444 70.5
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 1.8e-176 623.2 514 62.8
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 2.2e-174 616.3 512 61.3
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 2.7e-172 609.4 538 60.2
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 1.3e-171 607.1 497 62.8
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 5.1e-171 605.1 500 63.4
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 4.2e-165 585.5 524 58.4
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 3.3e-162 575.9 523 56.2
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 3.5e-151 539.3 488 59.0
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 1.9e-149 533.5 373 70.8
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 8.0e-148 528.1 407 65.4
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 9.7e-146 521.2 451 55.2
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 5.3e-144 515.4 523 55.3
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 2.2e-142 510.0 412 63.8
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 2.9e-142 509.6 448 59.6
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.8e-132 476.5 374 65.5
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 2.8e-129 466.5 467 48.4
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 3.1e-128 463.0 472 49.2
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 3.8e-126 456.1 470 48.5
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 4.3e-125 452.6 468 48.5
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 1.7e-118 430.6 471 45.9
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.5e-117 426.8 291 73.5
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 4.9e-113 412.5 439 46.7
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 2.5e-72 277.3 485 33.4
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 4.0e-67 260.0 425 34.1
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 8.5e-57 225.7 388 42.0
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 2.6e-50 204.1 150 65.3
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 8.5e-49 199.1 136 69.9
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.4e-43 181.8 107 86.9
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 4.5e-42 176.8 139 64.7
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 4.2e-40 170.2 244 43.0
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 6.5e-33 146.4 481 23.7
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 1.4e-27 128.6 92 67.4
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 7.0e-27 126.3 94 70.2
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 6.5e-25 119.8 114 60.5
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 3.6e-23 114.0 205 35.6
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 3.6e-23 114.0 68 79.4
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 1.4e-22 112.1 230 33.5
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 4.0e-22 110.5 213 36.2
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 1.1e-19 102.4 120 52.5
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 8.0e-15 86.3 80 60.0
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 1.4e-11 75.5 419 21.2
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 4.5e-10 70.5 51 62.7
BolC9t57452H Brassica oleracea HOM05D006019 ORTHO05D000049 6.8e-06 56.6 61 52.5


User provided reference genes

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