Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 0.0e+00 1460.3 762 100.0
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 0.0e+00 1113.6 762 74.5
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 1.0e-286 989.9 766 67.1
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 3.4e-285 984.9 775 66.6
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 1.5e-280 969.5 759 65.7
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 1.6e-279 966.1 759 65.9
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 8.9e-278 960.3 765 65.5
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.1e-275 953.4 768 65.0
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 5.9e-274 947.6 771 63.4
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 9.5e-272 940.3 758 63.3
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 1.8e-270 936.0 758 63.7
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 3.7e-268 928.3 770 62.1
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 2.0e-266 922.5 763 64.1
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 2.3e-265 919.1 749 64.0
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 5.0e-265 917.9 758 63.5
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.5e-264 916.4 758 61.2
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.9e-264 916.0 775 61.3
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 4.3e-264 914.8 762 63.9
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.8e-263 912.1 760 62.4
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 3.1e-262 908.7 758 61.9
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 4.4e-261 904.8 806 59.4
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 5.8e-261 904.4 758 61.6
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 2.9e-260 902.1 735 63.3
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.4e-260 901.0 777 60.6
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.1e-259 898.3 758 61.2
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 9.2e-259 897.1 759 61.5
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 3.9e-257 891.7 758 61.5
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 6.6e-257 891.0 763 60.4
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.6e-255 886.3 759 60.6
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 4.0e-254 881.7 712 64.0
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.5e-253 879.8 772 59.6
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.5e-253 879.8 758 59.4
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 3.4e-253 878.6 766 61.1
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 6.4e-252 874.4 766 59.7
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 8.4e-252 874.0 763 59.5
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 4.1e-251 871.7 768 58.3
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 4.6e-250 868.2 761 59.0
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.3e-249 866.7 758 58.6
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 8.6e-249 864.0 765 59.9
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 2.5e-248 862.4 765 58.8
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 4.3e-248 861.7 761 59.4
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 5.6e-248 861.3 769 58.9
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 6.2e-247 857.8 761 58.6
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 8.1e-247 857.4 765 57.6
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 2.4e-246 855.9 716 61.5
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 8.9e-246 854.0 766 57.8
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 1.2e-245 853.6 765 58.0
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 3.4e-245 852.0 774 57.5
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 5.8e-245 851.3 763 57.5
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.3e-244 850.1 763 57.3
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 4.9e-244 848.2 766 56.8
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 2.1e-242 842.8 761 58.3
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 1.0e-241 840.5 761 57.7
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 2.3e-241 839.3 759 57.3
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 1.5e-240 836.6 761 58.2
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 4.3e-240 835.1 765 58.6
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 1.4e-238 830.1 755 57.9
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 4.0e-238 828.6 761 58.9
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 4.0e-238 828.6 759 56.8
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 9.0e-238 827.4 786 55.9
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 1.2e-237 827.0 745 59.7
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 2.0e-237 826.2 760 57.4
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 5.8e-237 824.7 783 56.4
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 7.6e-237 824.3 761 56.9
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 4.9e-236 821.6 761 56.9
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 4.2e-235 818.5 772 56.3
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 9.3e-235 817.4 758 56.3
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 2.1e-234 816.2 761 56.5
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 4.6e-234 815.1 735 57.7
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 3.0e-233 812.4 784 55.1
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 6.7e-233 811.2 687 61.1
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 3.3e-232 808.9 779 55.6
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 4.3e-232 808.5 770 55.8
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 2.8e-231 805.8 771 57.1
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 1.8e-230 803.1 790 55.1
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 2.4e-227 792.7 764 54.8
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 4.2e-227 792.0 779 54.4
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-226 790.0 764 55.1
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 3.3e-224 782.3 738 59.5
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 4.8e-223 778.5 762 55.2
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 4.8e-223 778.5 655 62.9
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 5.8e-221 771.5 758 54.6
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 2.5e-219 766.1 802 52.6
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.1e-215 753.1 729 55.6
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 1.7e-212 743.4 573 66.0
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 2.2e-212 743.0 566 67.5
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 3.8e-212 742.3 573 64.7
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 6.5e-212 741.5 730 54.2
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 7.4e-208 728.0 759 51.8
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 1.4e-206 723.8 747 54.9
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 2.6e-205 719.5 746 53.4
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 4.5e-205 718.8 570 64.7
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 2.5e-203 713.0 760 50.9
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 2.3e-201 706.4 570 63.7
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.1e-198 697.6 570 62.8
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 2.0e-197 693.3 641 58.0
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 4.5e-197 692.2 573 62.1
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 4.2e-195 685.6 517 69.4
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 8.8e-193 677.9 709 51.8
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 3.3e-192 676.0 570 61.1
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.8e-185 653.7 462 72.3
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 1.5e-184 650.6 529 63.3
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.3e-184 649.4 531 65.0
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.1e-182 644.4 579 56.5
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 8.5e-180 634.8 759 48.5
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 4.2e-171 605.9 784 42.9
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 3.4e-168 596.3 765 46.0
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.2e-167 593.6 531 58.8
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 1.8e-166 590.5 632 51.7
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.3e-159 567.8 504 58.3
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 7.1e-134 482.3 440 56.8
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 9.3e-126 455.3 333 67.9
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 2.9e-119 433.7 826 33.3
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 4.3e-115 419.9 484 46.9
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 1.6e-114 417.9 326 65.6
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 5.5e-110 402.9 389 56.8
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 1.2e-109 401.7 292 70.9
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 9.6e-107 392.1 534 44.4
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.7e-103 381.3 284 67.3
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.2e-101 375.2 479 46.3
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 1.3e-100 371.7 288 67.0
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.1e-97 362.1 740 31.5
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 2.3e-92 344.4 771 31.8
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 5.9e-88 329.7 270 65.2
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 2.8e-82 310.8 230 67.8
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.1e-73 282.3 344 41.0
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 7.2e-70 269.6 177 75.7
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 2.2e-66 258.1 209 64.1
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 2.4e-65 254.6 642 29.4
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.3e-58 232.3 421 37.3
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.7e-58 230.7 416 37.5
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.4e-57 228.8 215 52.1
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 1.8e-44 185.3 235 42.6
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 9.8e-43 179.5 142 66.2
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 5.6e-38 163.7 244 39.3
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 3.2e-33 147.9 241 37.8
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 1.9e-30 138.7 185 39.5
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 5.6e-30 137.1 109 68.8
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 1.2e-24 119.4 102 60.8
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.2e-24 119.4 214 38.8
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 8.6e-23 113.2 76 72.4
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 9.5e-22 109.8 87 63.2
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 4.7e-21 107.5 292 29.5
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.2e-19 102.8 76 68.4
Nn5g29172 Nelumbo nucifera HOM05D004734 ORTHO05D272015 6.4e-18 97.1 56 85.7
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 3.2e-17 94.7 125 43.2
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.3e-15 88.6 68 64.7
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 3.3e-14 84.7 141 33.3
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 3.2e-09 68.2 87 46.0
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 2.5e-06 58.5 124 28.2
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 3.3e-06 58.2 71 45.1


User provided reference genes

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