Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07295 Nelumbo nucifera HOM05D000334 ORTHO05D000200 1.1e-40 169.5 81 100.0
Nn3g19473 Nelumbo nucifera HOM05D000334 ORTHO05D000200 2.3e-14 82.0 41 90.2
Peaxi162Scf00788g00110 Petunia axillaris HOM05D000334 ORTHO05D000200 4.0e-11 71.2 41 80.5
MD11G1276600 Malus domestica HOM05D000334 ORTHO05D000200 8.9e-11 70.1 45 77.8
Nn1g02517 Nelumbo nucifera HOM05D000334 ORTHO05D000200 1.5e-10 69.3 41 75.6
DCAR_030701 Daucus carota HOM05D000334 ORTHO05D000200 3.4e-10 68.2 41 80.5
Aqoxy2G03496 Aquilegia oxysepala HOM05D000334 ORTHO05D000200 4.4e-10 67.8 41 75.6
CiPaw.03G256300 Carya illinoinensis HOM05D000334 ORTHO05D000200 4.4e-10 67.8 41 75.6
Atru.chr5.1550 Acer truncatum HOM05D000334 ORTHO05D000200 5.8e-10 67.4 41 75.6
Ciclev10020512m.g Citrus clementina HOM05D000334 ORTHO05D000200 7.5e-10 67.0 42 78.6
Nn8g40905 Nelumbo nucifera HOM05D000334 ORTHO05D000200 7.5e-10 67.0 49 67.3
CAN.G749.14 Capsicum annuum HOM05D000334 ORTHO05D000200 9.9e-10 66.6 41 82.9
Prupe.8G233100 Prunus persica HOM05D000334 ORTHO05D000200 9.9e-10 66.6 41 70.7
TAR262G0001 Trochodendron aralioides HOM05D000334 ORTHO05D000200 9.9e-10 66.6 41 78.0
TAR365G0993 Trochodendron aralioides HOM05D000334 ORTHO05D000200 9.9e-10 66.6 41 78.0
Psat6g058080 Pisum sativum HOM05D000334 ORTHO05D000200 1.3e-09 66.2 44 68.2
TAR633G1506 Trochodendron aralioides HOM05D000334 ORTHO05D000200 1.3e-09 66.2 41 70.7
Dinv44602 Davidia involucrata HOM05D000334 ORTHO05D000200 1.7e-09 65.9 41 80.5
Duzib211G0605 Durio zibethinus HOM05D000334 ORTHO05D000200 1.7e-09 65.9 42 76.2
GSVIVG01003141001 Vitis vinifera HOM05D000334 ORTHO05D000200 1.7e-09 65.9 41 73.2
TAR362G0195 Trochodendron aralioides HOM05D000334 ORTHO05D000200 2.2e-09 65.5 41 68.3
TAR636G1310 Trochodendron aralioides HOM05D000334 ORTHO05D000200 2.9e-09 65.1 41 78.0
Gohir.A08G062400 Gossypium hirsutum HOM05D000334 ORTHO05D000200 3.7e-09 64.7 42 76.2
Gohir.D08G071600 Gossypium hirsutum HOM05D000334 ORTHO05D000200 3.7e-09 64.7 42 76.2
Gorai.004G075500 Gossypium raimondii HOM05D000334 ORTHO05D000200 3.7e-09 64.7 42 76.2
Sc05g0001090 Simmondsia chinensis HOM05D000334 ORTHO05D000200 3.7e-09 64.7 45 73.3
Actinidia08454 Actinidia chinensis HOM05D000334 ORTHO05D000200 4.9e-09 64.3 41 78.0
Dinv14068 Davidia involucrata HOM05D000334 ORTHO05D000200 4.9e-09 64.3 41 78.0
MBI04_g27057_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 4.9e-09 64.3 41 73.2
PGR004G2560 Punica granatum HOM05D000334 ORTHO05D000200 4.9e-09 64.3 41 78.0
RcHm_v2.0_Chr6g0289671 Rosa chinensis HOM05D000334 ORTHO05D000200 4.9e-09 64.3 44 72.7
Dinv22489 Davidia involucrata HOM05D000334 ORTHO05D000200 6.4e-09 63.9 41 70.7
Lj6A651T64 Lonicera japonica HOM05D000334 ORTHO05D000200 6.4e-09 63.9 41 78.0
Manes.01G202700 Manihot esculenta HOM05D000334 ORTHO05D000200 6.4e-09 63.9 41 75.6
Nitab4.5_0005057g0020 Nicotiana tabacum HOM05D000334 ORTHO05D000200 6.4e-09 63.9 41 78.0
MSTRG.21515 Avicennia marina HOM05D000334 ORTHO05D000200 8.3e-09 63.5 41 70.7
Carub.0003s2313 Capsella rubella HOM05D000334 ORTHO05D000200 8.3e-09 63.5 54 63.0
ClCG07G000570 Citrullus lanatus HOM05D000334 ORTHO05D000200 8.3e-09 63.5 41 70.7
MELO3C006486.2 Cucumis melo HOM05D000334 ORTHO05D000200 8.3e-09 63.5 41 73.2
MELO3C014315.2 Cucumis melo HOM05D000334 ORTHO05D000200 8.3e-09 63.5 41 70.7
Hma1.2p1_0172F.1_g076120 Hydrangea macrophylla HOM05D000334 ORTHO05D000200 8.3e-09 63.5 41 70.7
Rhsim04G0195800 Rhododendron simsii HOM05D000334 ORTHO05D000200 8.3e-09 63.5 41 75.6
RhsimUnG0084800 Rhododendron simsii HOM05D000334 ORTHO05D000200 8.3e-09 63.5 41 75.6
SalBow4G1330 Salvia bowleyana HOM05D000334 ORTHO05D000200 8.3e-09 63.5 63 55.6
Solyc09g082980.3 Solanum lycopersicum HOM05D000334 ORTHO05D000200 8.3e-09 63.5 41 78.0
Sopen09g031850 Solanum pennellii HOM05D000334 ORTHO05D000200 8.3e-09 63.5 41 78.0
GSVIVG01018080001 Vitis vinifera HOM05D000334 ORTHO05D000200 8.3e-09 63.5 41 75.6
Actinidia19975 Actinidia chinensis HOM05D000334 ORTHO05D000200 1.1e-08 63.2 41 70.7
Aqoxy5G00375 Aquilegia oxysepala HOM05D000334 ORTHO05D000200 1.1e-08 63.2 41 73.2
AT3G22970 Arabidopsis thaliana HOM05D000334 ORTHO05D000200 1.1e-08 63.2 54 63.0
CSS0010805 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 1.1e-08 63.2 41 75.6
Potri.005G216900 Populus trichocarpa HOM05D000334 ORTHO05D000200 1.1e-08 63.2 41 73.2
PGSC0003DMG400006081 Solanum tuberosum HOM05D000334 ORTHO05D000200 1.1e-08 63.2 41 78.0
vmacro15395 Vaccinium macrocarpon HOM05D000334 ORTHO05D000200 1.1e-08 63.2 41 75.6
Ah.02g111360 Amaranthus hybridus HOM05D000334 ORTHO05D000200 1.4e-08 62.8 56 60.7
Manes.05G083100 Manihot esculenta HOM05D000334 ORTHO05D000200 1.4e-08 62.8 42 73.8
Nitab4.5_0000941g0090 Nicotiana tabacum HOM05D000334 ORTHO05D000200 1.4e-08 62.8 41 75.6
Sabra02G0037200 Salix brachista HOM05D000334 ORTHO05D000200 1.4e-08 62.8 41 73.2
Haze_24519 Corylus avellana HOM05D000334 ORTHO05D000200 1.9e-08 62.4 41 70.7
CsaV3_3G012760 Cucumis sativus L. HOM05D000334 ORTHO05D000200 1.9e-08 62.4 41 70.7
Eucgr.H03395 Eucalyptus grandis HOM05D000334 ORTHO05D000200 1.9e-08 62.4 41 75.6
Sc13g0004880 Simmondsia chinensis HOM05D000334 ORTHO05D000200 1.9e-08 62.4 43 72.1
EL10Ac5g10478 Beta vulgaris HOM05D000334 ORTHO05D000200 2.4e-08 62.0 56 58.9
CSS0033897 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 2.4e-08 62.0 41 80.5
CSS0041713 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 2.4e-08 62.0 41 80.5
AUR62011955 Chenopodium quinoa HOM05D000334 ORTHO05D000200 2.4e-08 62.0 55 61.8
AUR62032268 Chenopodium quinoa HOM05D000334 ORTHO05D000200 2.4e-08 62.0 55 61.8
Duzib133G0145 Durio zibethinus HOM05D000334 ORTHO05D000200 2.4e-08 62.0 42 71.4
Nn2g11945 Nelumbo nucifera HOM05D000334 ORTHO05D000200 2.4e-08 62.0 39 74.4
Potri.002G046300 Populus trichocarpa HOM05D000334 ORTHO05D000200 2.4e-08 62.0 41 70.7
RcHm_v2.0_Chr4g0388891 Rosa chinensis HOM05D000334 ORTHO05D000200 2.4e-08 62.0 41 73.2
ClCG05G004740 Citrullus lanatus HOM05D000334 ORTHO05D000200 3.2e-08 61.6 41 70.7
CsaV3_2G013750 Cucumis sativus L. HOM05D000334 ORTHO05D000200 3.2e-08 61.6 41 68.3
Hma1.2p1_0897F.1_g234250 Hydrangea macrophylla HOM05D000334 ORTHO05D000200 3.2e-08 61.6 41 73.2
Sabra05G0166400 Salix brachista HOM05D000334 ORTHO05D000200 3.2e-08 61.6 41 70.7
Sed0007793 Sechium edule HOM05D000334 ORTHO05D000200 3.2e-08 61.6 41 70.7
THA.LOC104810650 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 3.2e-08 61.6 41 75.6
THA.LOC104822802 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 3.2e-08 61.6 41 75.6
AL3G37380 Arabidopsis lyrata HOM05D000334 ORTHO05D000200 4.1e-08 61.2 54 61.1
Ca_09718_v3 Cicer arietinum L. HOM05D000334 ORTHO05D000200 4.1e-08 61.2 39 71.8
SalBow2G2953 Salvia bowleyana HOM05D000334 ORTHO05D000200 4.1e-08 61.2 55 61.8
Sp3g20660 Schrenkiella parvula HOM05D000334 ORTHO05D000200 4.1e-08 61.2 41 75.6
Aa31LG8G9470 Aethionema arabicum HOM05D000334 ORTHO05D000200 5.4e-08 60.8 41 78.0
Cfa002313 Carpinus fangiana HOM05D000334 ORTHO05D000200 5.4e-08 60.8 40 72.5
VMungo0720G1211 Vigna mungo HOM05D000334 ORTHO05D000200 5.4e-08 60.8 42 71.4
BcaB06g26418 Brassica carinata HOM05D000334 ORTHO05D000200 7.1e-08 60.5 40 77.5
BcaC01g03404 Brassica carinata HOM05D000334 ORTHO05D000200 7.1e-08 60.5 41 73.2
A03p43100 Brassica napus HOM05D000334 ORTHO05D000200 7.1e-08 60.5 41 73.2
C03p52920 Brassica napus HOM05D000334 ORTHO05D000200 7.1e-08 60.5 41 73.2
BolC3t17556H Brassica oleracea HOM05D000334 ORTHO05D000200 7.1e-08 60.5 41 73.2
BraA03t13452Z Brassica rapa HOM05D000334 ORTHO05D000200 7.1e-08 60.5 41 73.2
Gohir.A08G187800 Gossypium hirsutum HOM05D000334 ORTHO05D000200 7.1e-08 60.5 42 71.4
Phvul.007G110800 Phaseolus vulgaris HOM05D000334 ORTHO05D000200 7.1e-08 60.5 41 73.2
Sed0003192 Sechium edule HOM05D000334 ORTHO05D000200 7.1e-08 60.5 40 72.5
COL.COLO4_06094 Corchorus olitorius HOM05D000334 ORTHO05D000200 9.2e-08 60.1 42 73.8
FAN17G0756 Fragaria x ananassa HOM05D000334 ORTHO05D000200 9.2e-08 60.1 41 73.2
FAN22G0166 Fragaria x ananassa HOM05D000334 ORTHO05D000200 9.2e-08 60.1 41 73.2
Glyma.10G179100 Glycine max HOM05D000334 ORTHO05D000200 9.2e-08 60.1 42 71.4
Lj3C720T18 Lonicera japonica HOM05D000334 ORTHO05D000200 9.2e-08 60.1 41 73.2
Sed0001408 Sechium edule HOM05D000334 ORTHO05D000200 9.2e-08 60.1 41 63.4
Actinidia40103 Actinidia chinensis HOM05D000334 ORTHO05D000200 1.2e-07 59.7 49 63.3
arahy.Tifrunner.gnm1.ann1.FX875U Arachis hypogaea HOM05D000334 ORTHO05D000200 1.2e-07 59.7 54 51.9
A05p25730 Brassica napus HOM05D000334 ORTHO05D000200 1.2e-07 59.7 43 72.1
CARHR098910 Cardamine hirsuta HOM05D000334 ORTHO05D000200 1.2e-07 59.7 35 82.9
FvH4_4g01830 Fragaria vesca HOM05D000334 ORTHO05D000200 1.2e-07 59.7 41 73.2
FAN12G0926 Fragaria x ananassa HOM05D000334 ORTHO05D000200 1.2e-07 59.7 41 73.2
Glyma.20G211100 Glycine max HOM05D000334 ORTHO05D000200 1.2e-07 59.7 42 69.0
PGR142G1081 Punica granatum HOM05D000334 ORTHO05D000200 1.2e-07 59.7 41 73.2
Rhsim02G0031800 Rhododendron simsii HOM05D000334 ORTHO05D000200 1.2e-07 59.7 41 70.7
MSTRG.18278 Avicennia marina HOM05D000334 ORTHO05D000200 1.6e-07 59.3 41 65.9
Lalb_Chr06g0162711 Lupinus albus HOM05D000334 ORTHO05D000200 1.6e-07 59.3 50 60.0
Duzib138G0775 Durio zibethinus HOM05D000334 ORTHO05D000200 2.1e-07 58.9 42 66.7
Gohir.D08G206100 Gossypium hirsutum HOM05D000334 ORTHO05D000200 2.1e-07 58.9 42 69.0
Gorai.004G218200 Gossypium raimondii HOM05D000334 ORTHO05D000200 2.1e-07 58.9 42 69.0
MD02G1260100 Malus domestica HOM05D000334 ORTHO05D000200 2.1e-07 58.9 41 70.7
MD16G1204400 Malus domestica HOM05D000334 ORTHO05D000200 2.1e-07 58.9 41 70.7
Prupe.1G024900 Prunus persica HOM05D000334 ORTHO05D000200 2.1e-07 58.9 41 70.7
TPR.G39111 Trifolium pratense HOM05D000334 ORTHO05D000200 2.1e-07 58.9 48 62.5
BcaC05g27998 Brassica carinata HOM05D000334 ORTHO05D000200 2.7e-07 58.5 40 75.0
C05p40070 Brassica napus HOM05D000334 ORTHO05D000200 2.7e-07 58.5 40 75.0
BolC5t32752H Brassica oleracea HOM05D000334 ORTHO05D000200 2.7e-07 58.5 40 75.0
Gohir.A07G208200 Gossypium hirsutum HOM05D000334 ORTHO05D000200 2.7e-07 58.5 41 70.7
Medtr1g070970 Medicago truncatula HOM05D000334 ORTHO05D000200 2.7e-07 58.5 46 63.0
TWI12G0483 Tripterygium wilfordii HOM05D000334 ORTHO05D000200 2.7e-07 58.5 41 68.3
MSTRG.24714 Avicennia marina HOM05D000334 ORTHO05D000200 3.5e-07 58.2 55 56.4
Ciclev10005172m.g Citrus clementina HOM05D000334 ORTHO05D000200 3.5e-07 58.2 41 73.2
Lalb_Chr02g0149981 Lupinus albus HOM05D000334 ORTHO05D000200 3.5e-07 58.2 43 67.4
MD13G1202800 Malus domestica HOM05D000334 ORTHO05D000200 3.5e-07 58.2 41 70.7
arahy.Tifrunner.gnm1.ann1.53NDB8 Arachis hypogaea HOM05D000334 ORTHO05D000200 4.6e-07 57.8 54 50.0
MSTRG.9941 Avicennia marina HOM05D000334 ORTHO05D000200 4.6e-07 57.8 56 58.9
BraA05t21455Z Brassica rapa HOM05D000334 ORTHO05D000200 4.6e-07 57.8 40 75.0
CANSAT25G1951 Cannabis sativa HOM05D000334 ORTHO05D000200 4.6e-07 57.8 46 63.0
Eucgr.B01479 Eucalyptus grandis HOM05D000334 ORTHO05D000200 4.6e-07 57.8 42 69.0
Gohir.D07G214200 Gossypium hirsutum HOM05D000334 ORTHO05D000200 4.6e-07 57.8 41 70.7
Gorai.001G242200 Gossypium raimondii HOM05D000334 ORTHO05D000200 4.6e-07 57.8 41 70.7
Oeu009112.1 Olea europaea HOM05D000334 ORTHO05D000200 4.6e-07 57.8 46 63.0
Psat6g113840 Pisum sativum HOM05D000334 ORTHO05D000200 4.6e-07 57.8 41 63.4
MSTRG.4078 Avicennia marina HOM05D000334 ORTHO05D000200 6.0e-07 57.4 54 63.0
FAN27G0713 Fragaria x ananassa HOM05D000334 ORTHO05D000200 6.0e-07 57.4 40 70.0
Lalb_Chr21g0311931 Lupinus albus HOM05D000334 ORTHO05D000200 6.0e-07 57.4 43 62.8
Atru.chr4.2314 Acer truncatum HOM05D000334 ORTHO05D000200 7.8e-07 57.0 44 65.9
DCAR_027260 Daucus carota HOM05D000334 ORTHO05D000200 7.8e-07 57.0 41 70.7
SHI10032 Sapria himalayana HOM05D000334 ORTHO05D000200 7.8e-07 57.0 44 61.4
Hund09562 Selenicereus undatus HOM05D000334 ORTHO05D000200 7.8e-07 57.0 51 56.9
MD03G1256000 Malus domestica HOM05D000334 ORTHO05D000200 1.0e-06 56.6 42 66.7
SalBow3G3096 Salvia bowleyana HOM05D000334 ORTHO05D000200 1.0e-06 56.6 43 65.1
SGA_v2.0_scaffold1G00549 Striga asiatica HOM05D000334 ORTHO05D000200 1.0e-06 56.6 64 46.9
BcaB03g14638 Brassica carinata HOM05D000334 ORTHO05D000200 1.3e-06 56.2 44 65.9
Rhsim13G0030200 Rhododendron simsii HOM05D000334 ORTHO05D000200 1.3e-06 56.2 41 63.4
THA.LOC104808584 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 1.7e-06 55.8 35 80.0
Cfa008409 Carpinus fangiana HOM05D000334 ORTHO05D000200 2.3e-06 55.5 40 75.0
Haze_11257 Corylus avellana HOM05D000334 ORTHO05D000200 2.3e-06 55.5 40 75.0
Actinidia05474 Actinidia chinensis HOM05D000334 ORTHO05D000200 3.0e-06 55.1 41 70.7
Ah.11g050070 Amaranthus hybridus HOM05D000334 ORTHO05D000200 3.0e-06 55.1 57 54.4
CANSAT78G0714 Cannabis sativa HOM05D000334 ORTHO05D000200 3.0e-06 55.1 43 65.1
FvH4_2g22770 Fragaria vesca HOM05D000334 ORTHO05D000200 3.0e-06 55.1 40 67.5
FAN15G3141 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.0e-06 55.1 40 67.5
FAN20G2804 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.0e-06 55.1 40 67.5
FAN24G3200 Fragaria x ananassa HOM05D000334 ORTHO05D000200 3.0e-06 55.1 40 67.5
Ca_09884_v3 Cicer arietinum L. HOM05D000334 ORTHO05D000200 3.9e-06 54.7 41 61.0
Sed0025279 Sechium edule HOM05D000334 ORTHO05D000200 3.9e-06 54.7 38 73.7
unitig_32.g11720 Utricularia gibba HOM05D000334 ORTHO05D000200 3.9e-06 54.7 43 60.5
vmacro08392 Vaccinium macrocarpon HOM05D000334 ORTHO05D000200 3.9e-06 54.7 42 64.3
Lalb_Chr19g0127841 Lupinus albus HOM05D000334 ORTHO05D000200 5.1e-06 54.3 44 61.4
Medtr1g076500 Medicago truncatula HOM05D000334 ORTHO05D000200 5.1e-06 54.3 41 63.4
QL12p042548 Quercus lobata HOM05D000334 ORTHO05D000200 5.1e-06 54.3 45 62.2
SGA_v2.0_scaffold101G29751 Striga asiatica HOM05D000334 ORTHO05D000200 5.1e-06 54.3 41 65.9
SGA_v2.0_scaffold138G35291 Striga asiatica HOM05D000334 ORTHO05D000200 5.1e-06 54.3 52 53.8
TWI18G0735 Tripterygium wilfordii HOM05D000334 ORTHO05D000200 6.6e-06 53.9 41 63.4
vmacro02622 Vaccinium macrocarpon HOM05D000334 ORTHO05D000200 6.6e-06 53.9 41 58.5
arahy.Tifrunner.gnm1.ann1.37XEK7 Arachis hypogaea HOM05D000334 ORTHO05D000200 8.6e-06 53.5 53 56.6
arahy.Tifrunner.gnm1.ann1.CAKS1J Arachis hypogaea HOM05D000334 ORTHO05D000200 8.6e-06 53.5 51 60.8
arahy.Tifrunner.gnm1.ann1.RX1L3G Arachis hypogaea HOM05D000334 ORTHO05D000200 8.6e-06 53.5 53 56.6
MBI11_g28616_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 8.6e-06 53.5 41 61.0
unitig_748.g7309 Utricularia gibba HOM05D000334 ORTHO05D000200 8.6e-06 53.5 56 51.8
HPP92_019483 Vanilla planifolia HOM05D000334 ORTHO05D000200 8.6e-06 53.5 43 60.5


User provided reference genes

Program Settings