Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.3e-158 561.6 357 100.0
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.0e-106 388.7 364 70.6
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 9.8e-86 321.2 358 63.1
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.3e-85 320.9 360 63.1
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 8.3e-85 318.2 338 66.6
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.8e-84 317.0 334 65.9
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.7e-77 293.9 329 56.8
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.2e-75 287.7 371 59.3
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 5.9e-75 285.4 369 60.7
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.0e-71 274.6 358 57.5
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 3.4e-70 269.6 354 59.0
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 4.4e-70 269.2 360 62.2
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 1.3e-69 267.7 371 50.4
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.4e-69 265.4 354 57.6
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 4.1e-68 262.7 356 59.8
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 4.1e-68 262.7 370 59.5
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 1.2e-67 261.2 374 52.1
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.2e-67 261.2 370 59.5
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.0e-67 260.4 380 48.7
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 2.7e-67 260.0 334 57.5
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 3.5e-67 259.6 406 59.9
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 4.6e-67 259.2 373 52.0
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.3e-66 257.7 354 54.8
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.1e-65 254.6 373 51.5
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.9e-65 253.8 355 49.9
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 2.5e-65 253.4 362 50.0
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.8e-64 250.0 365 58.9
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 4.7e-64 249.2 357 56.0
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 4.7e-64 249.2 327 57.2
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 2.3e-63 246.9 317 65.3
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 2.3e-63 246.9 372 52.2
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 4.0e-63 246.1 369 60.7
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 6.8e-63 245.4 354 50.6
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.2e-62 244.6 375 58.7
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 1.5e-62 244.2 378 56.1
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.0e-62 243.8 308 59.1
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 2.6e-62 243.4 370 57.6
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 2.2e-61 240.4 355 51.8
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 2.9e-61 240.0 384 49.5
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 6.4e-61 238.8 361 54.8
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 8.3e-61 238.4 352 49.4
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.9e-60 237.3 355 51.5
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 1.9e-60 237.3 357 60.2
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.9e-60 237.3 375 57.6
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 2.4e-60 236.9 352 47.2
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 3.2e-60 236.5 376 49.5
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 3.2e-60 236.5 261 55.9
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 4.1e-60 236.1 374 48.9
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 1.2e-59 234.6 372 46.2
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.1e-59 233.8 362 54.7
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 1.0e-58 231.5 345 55.9
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 1.3e-58 231.1 376 51.3
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.7e-58 230.7 396 52.0
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 5.1e-58 229.2 351 46.2
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 8.6e-58 228.4 370 53.0
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 1.1e-57 228.0 341 59.5
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.1e-57 228.0 355 54.1
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 3.3e-57 226.5 418 48.6
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 7.3e-57 225.3 339 53.1
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 7.3e-57 225.3 353 50.1
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 9.5e-57 224.9 376 52.9
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 1.2e-56 224.6 365 51.5
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.1e-56 223.8 339 54.0
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 2.1e-56 223.8 361 51.2
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 3.6e-56 223.0 352 53.1
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 4.7e-56 222.6 373 47.7
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 4.7e-56 222.6 352 53.1
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 8.1e-56 221.9 373 54.7
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 1.1e-55 221.5 362 52.8
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.4e-55 221.1 348 49.7
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.1e-55 219.9 361 51.0
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 4.0e-55 219.5 378 49.7
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 5.2e-55 219.2 352 54.8
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 5.2e-55 219.2 352 54.8
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 5.2e-55 219.2 352 54.8
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 8.9e-55 218.4 352 52.6
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 8.9e-55 218.4 346 48.8
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.2e-54 218.0 366 51.6
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 4.4e-54 216.1 425 47.1
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 4.4e-54 216.1 363 48.5
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 7.6e-54 215.3 365 49.6
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 7.6e-54 215.3 361 51.2
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 1.7e-53 214.2 351 55.6
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 1.7e-53 214.2 363 51.0
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.7e-53 214.2 372 49.5
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 3.8e-53 213.0 344 48.0
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.8e-53 213.0 369 54.5
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 8.4e-53 211.8 356 50.8
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 3.2e-52 209.9 352 54.5
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 3.2e-52 209.9 308 56.2
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 5.4e-52 209.1 353 55.5
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 7.1e-52 208.8 338 56.5
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 9.2e-52 208.4 361 49.3
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 9.2e-52 208.4 365 48.8
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.6e-51 207.6 342 48.0
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 3.5e-51 206.5 358 46.1
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 3.9e-50 203.0 361 48.5
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 3.9e-50 203.0 323 52.6
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.9e-49 200.7 382 49.0
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 4.7e-48 196.1 349 51.6
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.0e-47 193.0 300 52.3
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 9.0e-47 191.8 358 44.4
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.4e-46 189.5 153 69.3
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.3e-45 188.0 357 42.6
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.3e-45 188.0 328 48.5
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.7e-45 187.6 308 49.7
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.2e-45 187.2 353 52.4
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.9e-45 186.8 352 41.5
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.8e-45 186.4 334 48.5
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.9e-45 186.0 336 42.3
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 4.9e-45 186.0 361 44.0
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 8.4e-45 185.3 333 39.3
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.1e-44 184.9 376 48.4
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.1e-44 184.9 334 48.2
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 5.4e-44 182.6 328 44.8
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 5.4e-44 182.6 321 47.0
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 1.3e-42 177.9 299 49.8
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 3.0e-42 176.8 337 48.4
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.0e-42 176.8 300 55.3
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 5.1e-42 176.0 297 49.2
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.3e-41 173.3 378 50.5
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.6e-41 172.6 378 50.3
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.3e-40 171.4 236 55.9
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.6e-40 171.0 337 40.7
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 3.6e-40 169.9 352 51.4
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 2.4e-39 167.2 170 58.2
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 5.8e-38 162.5 321 40.8
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.3e-37 161.4 247 59.5
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.3e-37 161.4 352 40.3
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.7e-37 161.0 361 41.8
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 1.1e-36 158.3 377 45.6
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 3.5e-35 153.3 356 43.3
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.0e-35 152.5 128 64.8
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 5.1e-34 149.4 368 37.5
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 2.8e-32 143.7 379 44.1
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 6.2e-32 142.5 337 38.3
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 8.1e-32 142.1 324 50.6
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 4.0e-31 139.8 169 49.7
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 9.0e-31 138.7 352 35.2
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 2.2e-29 134.0 223 42.2
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 6.4e-29 132.5 349 37.0
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 8.4e-29 132.1 173 49.1
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.8e-26 124.4 296 35.5
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 3.9e-26 123.2 143 52.4
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 5.1e-26 122.9 159 50.3
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 1.5e-25 121.3 330 32.1
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.1e-23 115.2 294 37.8
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 4.0e-23 113.2 354 36.7
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 9.0e-23 112.1 348 41.7
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 1.0e-21 108.6 238 43.3
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 6.5e-21 105.9 361 42.4
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 8.7e-18 95.5 261 33.7
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.7e-16 90.1 101 62.4
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.4e-15 88.2 174 41.4
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 4.8e-08 63.2 350 39.4
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 1.8e-07 61.2 80 53.8
Oeu049699.1 Olea europaea HOM05D004496 ORTHO05D005513 4.5e-06 56.6 62 51.6
Zm00001eb143140 Zea mays HOM05D004496 ORTHO05D005513 7.7e-06 55.8 129 46.5


User provided reference genes

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