Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 3.9e-137 491.5 254 100.0
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 2.5e-112 409.1 253 80.6
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 1.5e-96 356.7 256 71.9
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 1.8e-94 349.7 258 69.0
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 1.0e-92 344.0 256 68.8
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 1.3e-92 343.6 256 70.3
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 2.2e-92 342.8 257 70.0
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 3.8e-92 342.0 251 70.1
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 8.5e-92 340.9 256 69.9
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 2.5e-91 339.3 258 70.2
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 7.2e-91 337.8 261 69.3
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 7.2e-91 337.8 257 68.5
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 7.2e-91 337.8 258 65.9
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 1.6e-90 336.7 257 67.7
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 2.1e-90 336.3 257 70.0
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 4.7e-90 335.1 257 67.3
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 1.0e-89 334.0 257 67.7
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 1.0e-89 334.0 266 66.9
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 1.4e-89 333.6 256 67.2
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 1.8e-89 333.2 262 67.6
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 2.3e-89 332.8 257 67.3
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 2.0e-88 329.7 257 66.5
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 4.4e-88 328.6 257 65.8
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 9.7e-88 327.4 257 65.8
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 1.3e-87 327.0 276 63.8
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 1.7e-87 326.6 256 64.5
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 2.2e-87 326.2 258 65.9
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 2.8e-87 325.9 257 65.8
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 1.4e-86 323.6 257 65.4
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 1.8e-86 323.2 262 67.2
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 4.1e-86 322.0 257 64.6
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 4.1e-86 322.0 258 65.1
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 2.6e-85 319.3 260 62.7
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 3.5e-85 318.9 252 65.5
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 4.5e-85 318.5 258 63.6
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 5.9e-85 318.2 255 66.3
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 5.9e-85 318.2 256 64.1
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 5.9e-85 318.2 258 64.7
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 1.3e-84 317.0 257 63.4
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 1.7e-84 316.6 256 64.1
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 3.8e-84 315.5 259 62.5
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 8.5e-84 314.3 257 65.8
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 1.5e-83 313.5 258 65.9
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 5.5e-83 311.6 261 62.8
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 7.2e-83 311.2 283 59.7
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 9.4e-83 310.8 258 60.5
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 3.6e-82 308.9 257 62.3
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 3.0e-81 305.8 260 63.1
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 6.7e-81 304.7 257 63.4
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 3.3e-80 302.4 256 61.7
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 5.7e-80 301.6 259 62.5
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 7.5e-80 301.2 256 60.5
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 1.3e-79 300.4 261 63.2
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 2.2e-79 299.7 259 61.4
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 2.2e-79 299.7 259 66.0
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 6.3e-79 298.1 261 62.1
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 8.2e-79 297.7 260 62.3
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 1.1e-78 297.4 267 59.2
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 1.4e-78 297.0 257 61.1
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 1.8e-78 296.6 257 61.5
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 5.3e-78 295.0 210 69.0
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 5.3e-78 295.0 256 60.5
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 9.1e-78 294.3 265 58.1
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 2.7e-77 292.7 256 59.4
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 3.5e-77 292.4 256 60.9
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 3.5e-77 292.4 258 60.9
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 5.9e-77 291.6 256 59.4
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 7.7e-77 291.2 265 57.7
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 1.3e-76 290.4 265 57.4
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 1.3e-76 290.4 258 60.1
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.7e-76 290.0 255 59.6
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 8.5e-76 287.7 256 59.8
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 1.1e-75 287.3 255 58.4
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 2.5e-75 286.2 252 59.1
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 7.2e-75 284.6 254 59.1
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 9.4e-75 284.3 257 58.0
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 1.2e-74 283.9 254 59.1
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 2.7e-74 282.7 259 56.0
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 2.7e-74 282.7 213 71.4
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 3.6e-74 282.3 254 58.7
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 6.1e-74 281.6 258 60.1
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 2.3e-73 279.6 261 58.6
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 6.8e-73 278.1 252 56.3
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.3e-71 273.9 247 57.5
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 1.1e-70 270.8 279 53.8
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 2.4e-70 269.6 259 56.4
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 5.4e-70 268.5 262 55.0
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 9.1e-70 267.7 279 53.4
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 1.1e-67 260.8 258 55.0
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 2.7e-66 256.1 256 54.7
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 1.4e-65 253.8 252 52.8
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 2.3e-65 253.1 307 48.2
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 2.4e-62 243.0 192 67.7
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 5.4e-62 241.9 255 52.2
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 5.4e-62 241.9 256 55.5
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 6.8e-57 224.9 247 49.8
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 1.0e-49 201.1 159 66.7
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 5.4e-46 188.7 161 55.9
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 5.0e-44 182.2 246 45.5
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 2.2e-39 166.8 171 53.8
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 4.7e-34 149.1 247 40.9
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 3.4e-32 142.9 147 57.8
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 2.7e-29 133.3 229 38.4
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 9.6e-27 124.8 126 61.1
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 3.6e-18 96.3 92 51.1
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 2.2e-15 87.0 64 57.8
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 6.4e-15 85.5 228 30.7
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 2.4e-14 83.6 228 31.1
HPP92_017340 Vanilla planifolia HOM05D002897 ORTHO05D008718 2.1e-10 70.5 110 43.6
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 1.4e-09 67.8 125 36.0
BolC6t39233H Brassica oleracea HOM05D002897 ORTHO05D008718 1.1e-06 58.2 44 54.5


User provided reference genes

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